BAC Information

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BAC

Clone NameB6Ng01-059C02
Chromosome12 (Build37)
Map Location 46,595,942 - 46,716,540
singlet/doubletdoublet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream geneLOC664952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059C02.bB6Ng01-059C02.g
ACCDH880503DH880504
length1,1501,099
definitionDH880503|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C02, 5' end.DH880504|Mus musculus domesticus DNA, BAC clone: B6Ng01-059C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,715,359 - 46,716,540)(46,595,942 - 46,597,051)
sequence
gaattcaacctagaagaggtggaagccatctgatgtttctcttcttttta
ctgaaagccatgtataagcaacctaacaattgactacaactatggctaga
cttctatgcgaagtccagtaagtcagattaaaagaacgggcaggggtgta
aagagcctgtttcatcatgtccgttctgttgaatattctcctaagatatt
gagtagttcctgtaattttaatatccaagtgaaagcaatccatagataag
gatttccaactgaaccgaaagctagcagcttaagtcacacggccattgtg
gctgatataccatatctatcttaaaggcatatccaaagaagaacttcttt
ttgttagaatttagggttaaaaacaagacgtaaagctgcttctcagagtt
tcgacactgcaaggtgagcactgaaggccttagctcctgaattactttgt
gcctttagaaaatgcctgtcacttcccttaattccttgctcagtcattta
gaacaaaacagagcacaacaaaatctcaatccattctgccagctcaacaa
aaggctttgtgtgggtgtgtgcaagaaagtaattatgaggtttttatttc
actaattattcttcagcctttgaaatgtcagtgtaggtcaaagtagcagc
caatgttttgaaccagatctgaatgaaaataaggaagccactgcaggaat
aacaaggaaaagaatcaagagtaaagtaatttgacaccatgaatgacaga
aaatgtagttcaaggtcagaggaacttaagagtttccatccaagaaattt
ccaagctcccgttgtgatgaaaaatttattgggcagcagtagcatgattg
actgccccactgttgtcaccatggtgatgctctgaacatatgtaaggaga
aaattaagtgatgaaattaattataaatatttttaaattgtagagagctt
tttttttctctgagtgctacttttagggactgttattatcccaaaccttt
tatactcattgagcatagataactttctagagaatcatgtttttgagctg
gttatgtatatttgagctagcaccactatctgctttagcactcatttaaa
ccaattagatgaatttctaccttagaagtagcaacctgtgaggagcatgt

gaattcagaaattgctctgcttgacatctgtattctgtgagaagtcagga
acgcacttggcctcagagacatggaggctaagctaagcaatgcatttgtt
tactgcctgaatgtgatgtgttctctttaacaaaggcaattgtttttaca
ttttgattttgtaaaacatgcaaaatggttatccaagaagtcttctaagc
tataaatggtgtatgtaatattaaagattttatgatccaaatctcaattc
cttagaaaagtaaaagctttttctcatgaaagccctacactttagaagtg
atcttaataaagtgttcgatgtgttcctagacacccattattctgctcga
caataaagttaacaaaggcaagtttaggtcagtgctttcatttgtacatt
ggctgcatttataaaattcttttataatgaattttggtatttatagttaa
cagaaatgtctcattattctcttgataattaccgatatccaaagttccac
tgtgagagcgttacttttttatgtgagaattttgaactctattaagttag
aaatgcatcctagaaatggcaatttttaaaataagggttcaggaaactat
gagcaaaacatgaactaaagcctgcttttgtaaagtgttatagaatgttt
ttatatctttaaataatattctgggggggctggaaaattaagatgatgta
ggcttagtttctagtatccacatggcagcacacagctccagttgcagggg
atcaaatgtcctctctggcttcttcgggtgcttctcacccatgttacaca
tcatacacagacacaaaacacccacacacataaagtaaaaataaaatctc
aaaatgggaatattttaaaataatatgcatcaaatacacattctacccct
ttagagatgtctaacttgtgctttaagtgtaaagtatactttatttgttc
tggaaggttaaatgtctaatagagcagaaagaggcccatggcaccctgga
gatgttttcacttctgaagggttgtggaagccaaggaggcatgccactcc
cttctcactagaaagaactaactttgaaaaagtaaatttctatcaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46715359_46716540
seq2: B6Ng01-059C02.b_47_1196 (reverse)

seq1  ACATGCTCTCCTCACAGGGTGTGCTTACCTTCTCTAGAAGTTAGAAAATG  50
      |||||  |||||||||||   ||||   |||||    ||| ||||||   
seq2  ACATG--CTCCTCACAGG--TTGCT--ACTTCT----AAGGTAGAAA--T  38

seq1  TCATACTATAATGTGTATTAAAATGAGTGGCTAAAAGCAGATAGTGGTGC  100
      |||   | ||||  |  || |||||||| ||| |||||||||||||||| 
seq2  TCA---TCTAATTGG--TTTAAATGAGT-GCT-AAAGCAGATAGTGGTG-  80

seq1  CTAGCCTCAAATTAATACATAGACCAGCTCAAAAACATGATTTCTCTAGA  150
      |||| |||||||  ||||||| |||||||||||||||||| |||||||||
seq2  CTAG-CTCAAAT--ATACATA-ACCAGCTCAAAAACATGA-TTCTCTAGA  125

seq1  AAGTTTATCTATGCTCCAATGAGTTATAAAAGGTTTGGGATAAATTAACA  200
      ||| ||||||||||| ||||||| |||||||||||||||||||  |||||
seq2  AAG-TTATCTATGCT-CAATGAG-TATAAAAGGTTTGGGATAA--TAACA  170

seq1  GTCCCTAAAAGTAGCAACTTCAGAGAAAAAAAAAGCTCTCTACAATTTAA  250
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  GTCCCTAAAAGTAGCA--CTCAGAGAAAAAAAAAGCTCTCTACAATTTAA  218

seq1  AAATATTTATAATTAATTTCATCACTTAATTTTCTCCTTACATATGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTATAATTAATTTCATCACTTAATTTTCTCCTTACATATGTTCA  268

seq1  GAGCATCACCATGGTGACAACAGTGGGGCAGTCAATCATGCTACTGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCACCATGGTGACAACAGTGGGGCAGTCAATCATGCTACTGCTGC  318

seq1  CCAATAAATTTTTCATCACAACGGGAGCTTGGAAATTTCTTGGATGGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAATTTTTCATCACAACGGGAGCTTGGAAATTTCTTGGATGGAAA  368

seq1  CTCTTAAGTTCCTCTGACCTTGAACTACATTTTCTGTCATTCATGGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAAGTTCCTCTGACCTTGAACTACATTTTCTGTCATTCATGGTGTC  418

seq1  AAATTACTTTACTCTTGATTCTTTTCCTTGTTATTCCTGCAGTGGCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTTTACTCTTGATTCTTTTCCTTGTTATTCCTGCAGTGGCTTCC  468

seq1  TTATTTTCATTCAGATCTGGTTCAAAACATTGGCTGCTACTTTGACCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCATTCAGATCTGGTTCAAAACATTGGCTGCTACTTTGACCTAC  518

seq1  ACTGACATTTCAAAGGCTGAAGAATAATTAGTGAAATAAAAACCTCATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACATTTCAAAGGCTGAAGAATAATTAGTGAAATAAAAACCTCATAA  568

seq1  TTACTTTCTTGCACACACCCACACAAAGCCTTTTGTTGAGCTGGCAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCTTGCACACACCCACACAAAGCCTTTTGTTGAGCTGGCAGAAT  618

seq1  GGATTGAGATTTTGTTGTGCTCTGTTTTGTTCTAAATGACTGAGCAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAGATTTTGTTGTGCTCTGTTTTGTTCTAAATGACTGAGCAAGGA  668

seq1  ATTAAGGGAAGTGACAGGCATTTTCTAAAGGCACAAAGTAATTCAGGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGGAAGTGACAGGCATTTTCTAAAGGCACAAAGTAATTCAGGAGC  718

seq1  TAAGGCCTTCAGTGCTCACCTTGCAGTGTCGAAACTCTGAGAAGCAGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCTTCAGTGCTCACCTTGCAGTGTCGAAACTCTGAGAAGCAGCTT  768

seq1  TACGTCTTGTTTTTAACCCTAAATTCTAACAAAAAGAAGTTCTTCTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTCTTGTTTTTAACCCTAAATTCTAACAAAAAGAAGTTCTTCTTTGG  818

seq1  ATATGCCTTTAAGATAGATATGGTATATCAGCCACAATGGCCGTGTGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTTTAAGATAGATATGGTATATCAGCCACAATGGCCGTGTGACT  868

seq1  TAAGCTGCTAGCTTTCGGTTCAGTTGGAAATCCTTATCTATGGATTGCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGCTAGCTTTCGGTTCAGTTGGAAATCCTTATCTATGGATTGCTT  918

seq1  TCACTTGGATATTAAAATTACAGGAACTACTCAATATCTTAGGAGAATAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGGATATTAAAATTACAGGAACTACTCAATATCTTAGGAGAATAT  968

seq1  TCAACAGAACGGACATGATGAAACAGGCTCTTTACACCCCTGCCCGTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGAACGGACATGATGAAACAGGCTCTTTACACCCCTGCCCGTTCT  1018

seq1  TTTAATCTGACTTACTGGACTTCGCATAGAAGTCTAGCCATAGTTGTAGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTGACTTACTGGACTTCGCATAGAAGTCTAGCCATAGTTGTAGT  1068

seq1  CAATTGTTAGGTTGCTTATACATGGCTTTCAGTAAAAAGAAGAGAAACAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTTAGGTTGCTTATACATGGCTTTCAGTAAAAAGAAGAGAAACAT  1118

seq1  CAGATGGCTTCCACCTCTTCTAGGTTGAATTC  1182
      ||||||||||||||||||||||||||||||||
seq2  CAGATGGCTTCCACCTCTTCTAGGTTGAATTC  1150

seq1: chr12_46595942_46597051
seq2: B6Ng01-059C02.g_66_1164

seq1  GAATTCAGAAATTGCTCTGCTTGACATCTGTATTCTGTGAGAAGTCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATTGCTCTGCTTGACATCTGTATTCTGTGAGAAGTCAGGA  50

seq1  ACGCACTTGGCCTCAGAGACATGGAGGCTAAGCTAAGCAATGCATTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACTTGGCCTCAGAGACATGGAGGCTAAGCTAAGCAATGCATTTGTT  100

seq1  TACTGCCTGAATGTGATGTGTTCTCTTTAACAAAGGCAATTGTTTTTACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCCTGAATGTGATGTGTTCTCTTTAACAAAGGCAATTGTTTTTACA  150

seq1  TTTTGATTTTGTAAAACATGCAAAATGGTTATCCAAGAAGTCTTCTAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTTGTAAAACATGCAAAATGGTTATCCAAGAAGTCTTCTAAGC  200

seq1  TATAAATGGTGTATGTAATATTAAAGATTTTATGATCCAAATCTCAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATGGTGTATGTAATATTAAAGATTTTATGATCCAAATCTCAATTC  250

seq1  CTTAGAAAAGTAAAAGCTTTTTCTCATGAAAGCCCTACACTTTAGAAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAAGTAAAAGCTTTTTCTCATGAAAGCCCTACACTTTAGAAGTG  300

seq1  ATCTTAATAAAGTGTTCGATGTGTTCCTAGACACCCATTATTCTGCTCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATAAAGTGTTCGATGTGTTCCTAGACACCCATTATTCTGCTCGA  350

seq1  CAATAAAGTTAACAAAGGCAAGTTTAGGTCAGTGCTTTCATTTGTACATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGTTAACAAAGGCAAGTTTAGGTCAGTGCTTTCATTTGTACATT  400

seq1  GGCTGCATTTATAAAATTCTTTTATAATGAATTTTGGTATTTATAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCATTTATAAAATTCTTTTATAATGAATTTTGGTATTTATAGTTAA  450

seq1  CAGAAATGTCTCATTATTCTCTTGATAATTACCGATATCCAAAGTTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATGTCTCATTATTCTCTTGATAATTACCGATATCCAAAGTTCCAC  500

seq1  TGTGAGAGCGTTACTTTTTTATGTGAGAATTTTGAACTCTATTAAGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAGCGTTACTTTTTTATGTGAGAATTTTGAACTCTATTAAGTTAG  550

seq1  AAATGCATCCTAGAAATGGCAATTTTTAAAATAAGGGTTCAGGAAACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATCCTAGAAATGGCAATTTTTAAAATAAGGGTTCAGGAAACTAT  600

seq1  GAGCAAAACATGAACTAAAGCCTGCTTTTGTAAAGTGTTATAGAATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAACATGAACTAAAGCCTGCTTTTGTAAAGTGTTATAGAATGTTT  650

seq1  TTATATCTTTAAATAATATTCTGGGGGGGCTGGAAAATTAAGATGATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCTTTAAATAATATTCTGGGGGGGCTGGAAAATTAAGATGATGTA  700

seq1  GGCTTAGTTTCTAGTATCCACATGGCAGCACACAGCTCCAGTTGCAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGTTTCTAGTATCCACATGGCAGCACACAGCTCCAGTTGCAGGGG  750

seq1  ATCAAATGTCCTCTCTGGCTTCTTCGGGTGCTTCTCACCCATGTTACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGTCCTCTCTGGCTTCTTCGGGTGCTTCTCACCCATGTTACACA  800

seq1  TCATACACAGACACAAAACACCCACACACATAAAGTAAAAATAAAATCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACACAGACACAAAACACCCACACACATAAAGTAAAAATAAAATCTC  850

seq1  AAAATGGGAATATTTTAAAATAATATGCATCAAATACACATTCTACCCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGGAATATTTTAAAATAATATGCATCAAATACACATTCTACCCCT  900

seq1  TTAAGAGAATGTCTAACTTGTGCTTTAAGTTGTAAAGTATACTTTATTTG  950
      || |||| ||||||||||||||||||||| ||||||||||||||||||||
seq2  TT-AGAG-ATGTCTAACTTGTGCTTTAAG-TGTAAAGTATACTTTATTTG  947

seq1  TTCTGGAAGGTTAAATGTCTAAATAGAGCAGAAAGAGGCCCATGGCACCC  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTGGAAGGTTAAATGTCT-AATAGAGCAGAAAGAGGCCCATGGCACCC  996

seq1  TGGAGATGTTTTTCACTTCTGAAGGGTTTGTGGAAGCCAAGGAGGCATGC  1050
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  TGGAGATG-TTTTCACTTCTGAAGGG-TTGTGGAAGCCAAGGAGGCATGC  1044

seq1  CACTCACTTCTCCACTTAGAATAGAACTAAACTTTGAAAGAGTACATTTT  1100
      ||||| ||||| ||| ||||| |||||| |||||||||| |||| | |||
seq2  CACTCCCTTCT-CAC-TAGAA-AGAACT-AACTTTGAAAAAGTA-AATTT  1089

seq1  CTATCTATGA  1110
      ||||| ||||
seq2  CTATCAATGA  1099