BAC Information

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BAC

Clone NameB6Ng01-059L14
Chromosome12 (Build37)3 (Build37)
Map Location 97,730,214 - 97,731,36541,059,546 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
Downstream geneEG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059L14.bB6Ng01-059L14.g
ACCDH880915DH880916
length1,1461,014
definitionDH880915|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L14, 5' end.DH880916|Mus musculus domesticus DNA, BAC clone: B6Ng01-059L14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,730,214 - 97,731,365)(41,059,546 - 41,059,737)
sequence
gaattctttagaaagaattaggatatgtagctattttggagaaggtatgt
catagtgggttggctttgaaatttctaaagcatgtcccagacccaatttt
cttctctgccttcaaattgttgataatatggaagctctcagctactgctt
ccacacctaccttaccttcctgttgccatgctttcagcaatgatggtcat
agactgaccttctaaaactgtgaacacatacccaatcatgtgctttattc
aacatttttttttaaaaaaaggatttagcagcaaagtacagcattttaat
gtgggctctcagaattaaattatatcttccatccttgtacaaccggtgct
ttaacaaatttactctcatgataggtcttgtgttatgtttctaagtatgt
ataatcaatgtggctttgtcattatttttgtgtgtaataatgggtatctg
gggactgataggaccttacatatattgtaaaagcactatgtaactaacct
atggtgccagcctctaagatgcatattaaaaagcacatgtatctgaaatt
ttcctgttttgtatgctgttgtgatttaaatttctaagatacttgtttaa
ttgccatcaataatttcaatttcttgctttaggttttcagctctaaattt
agtgttcctttatccagattatgatcttggctccaaaatcactttaaaat
tttatacttatttactcacttcttccatgcctcagaatgcatttgtagtt
tgcatgtttggattaaaaatagaaaaattctcatgttgataatagccaag
gtcaatagcccaaagccctgatccttctcaactaacctgtttatttctaa
acagtaaatactttgcaatgtgacatctaatataaatatatatgtatata
tgtatatataattatcatgaatatatatgatacactcatatatatgatag
attttttgtaactatgacattctgttcagtgttttcttatatctggaaca
gaagctgatatttggttatcagtaacaaaagtgtgtcattatgttcttta
aggattaataaattaattctgagttctcttgatcggtaacatgtgtaggg
ctgaacttattttttagcaaacagtaacatgtagtgccttcttttc
gaattctttgtttatctctgttgcccattttttaatgggttatttgattt
tctggaatccagcttcttgagttctttatatatattggatattagtcccc
tatctgatttaggattggtaaagatcctttcccaatctgttggtcacctt
tttgtcctattgacagtgtcttttgccttacagaagctttgcaattttat
ggtagaccaatggaatacaattgaagactcagaaatgcacccacacaccc
atgatcacttgatctttcacaagggagataaaaccatccagtgaaaaaaa
agacagcattttcaacaaatggtgctggcacaaaggcagttatcatgtag
aagaatgcaaattgatccattcttatctccttgtactaagatcaagtcta
agtggttcaaggaacctcagataaaaccagagacactaaaacttatagag
gagaaagttgggaagtgccttgaatatatggacacagtgggaagattcct
gaacagaacagcaatggtttatgctgtaagatcagcttgctttcttgtag
cgcccaggactaccagcccagagatggtaccacccacaaggggccctccc
catttgatcactaattgaggaattgctctataactgtatctcatggaggc
ctttcctcacctgaagctcctttctctgtgttaactccagcatgtgtcaa
gttgacacacaaaaccagccagtacaaacatcttaagtgcctaagtgaag
tggctggatacaaactaactccaaacaaagcaaaaacaaacaaacacaaa
caaaaataaacaaataatcagtatcccttctttatacaaacaaaaaaatg
ggctgagaaagaattagtgagtccataccctttcacaatgcctagaaata
aatttaaaacatctctttatatcttctaacaagcaagtgaaagactagta
cgacagaacttcagtatttagaaataaattgaagaagaattcaagaatat
tgatgatcttcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_97730214_97731365
seq2: B6Ng01-059L14.b_48_1193

seq1  GAATTCTTTAGAAAGAATTAGGATATGTAGCTATTTTGGAGAAGGTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGAAAGAATTAGGATATGTAGCTATTTTGGAGAAGGTATGT  50

seq1  CATAGTGGGTTGGCTTTGAAATTTCTAAAGCATGTCCCAGACCCAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGGGTTGGCTTTGAAATTTCTAAAGCATGTCCCAGACCCAATTTT  100

seq1  CTTCTCTGCCTTCAAATTGTTGATAATATGGAAGCTCTCAGCTACTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGCCTTCAAATTGTTGATAATATGGAAGCTCTCAGCTACTGCTT  150

seq1  CCACACCTACCTTACCTTCCTGTTGCCATGCTTTCAGCAATGATGGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTACCTTACCTTCCTGTTGCCATGCTTTCAGCAATGATGGTCAT  200

seq1  AGACTGACCTTCTAAAACTGTGAACACATACCCAATCATGTGCTTTATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGACCTTCTAAAACTGTGAACACATACCCAATCATGTGCTTTATTC  250

seq1  AACATTTTTTTTTAAAAAAAGGATTTAGCAGCAAAGTACAGCATTTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTTTTTTAAAAAAAGGATTTAGCAGCAAAGTACAGCATTTTAAT  300

seq1  GTGGGCTCTCAGAATTAAATTATATCTTCCATCCTTGTACAACCGGTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCTCTCAGAATTAAATTATATCTTCCATCCTTGTACAACCGGTGCT  350

seq1  TTAACAAATTTACTCTCATGATAGGTCTTGTGTTATGTTTCTAAGTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAATTTACTCTCATGATAGGTCTTGTGTTATGTTTCTAAGTATGT  400

seq1  ATAATCAATGTGGCTTTGTCATTATTTTTGTGTGTAATAATGGGTATCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAATGTGGCTTTGTCATTATTTTTGTGTGTAATAATGGGTATCTG  450

seq1  GGGACTGATAGGACCTTACATATATTGTAAAAGCACTATGTAACTAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTGATAGGACCTTACATATATTGTAAAAGCACTATGTAACTAACCT  500

seq1  ATGGTGCCAGCCTCTAAGATGCATATTAAAAAGCACATGTATCTGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCCAGCCTCTAAGATGCATATTAAAAAGCACATGTATCTGAAATT  550

seq1  TTCCTGTTTTGTATGCTGTTGTGATTTAAATTTCTAAGATACTTGTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTTTGTATGCTGTTGTGATTTAAATTTCTAAGATACTTGTTTAA  600

seq1  TTGCCATCAATAATTTCAATTTCTTGCTTTAGGTTTTCAGCTCTAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATCAATAATTTCAATTTCTTGCTTTAGGTTTTCAGCTCTAAATTT  650

seq1  AGTGTTCCTTTATCCAGATTATGATCTTGGCTCCAAAATCACTTTAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCTTTATCCAGATTATGATCTTGGCTCCAAAATCACTTTAAAAT  700

seq1  TTTATACTTATTTACTCACTTCTTCCATGCCTCAGAATGCATTTGTAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTTATTTACTCACTTCTTCCATGCCTCAGAATGCATTTGTAGTT  750

seq1  TGCATGTTTGGATTAAAAATAGAAAAATTCTCATGTTGATAATAGCCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTTTGGATTAAAAATAGAAAAATTCTCATGTTGATAATAGCCAAG  800

seq1  GTCAATAGCCCAAAGCCCTGATCCTTCTCAACTAACCTGTTTATTTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAATAGCCCAAAGCCCTGATCCTTCTCAACTAACCTGTTTATTTCTAA  850

seq1  ACAGTAAATACTTTGCAATGTGACATCTAATATAAATATATATGTATATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAATACTTTGCAATGTGACATCTAATATAAATATATATGTATATA  900

seq1  TGTATATATAATTATCATGAATATATATGATAACACTCATATATATGATA  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||| 
seq2  TGTATATATAATTATCATGAATATATATGAT-ACACTCATATATATGAT-  948

seq1  AGATTTTTTGTAACTATGACATTCTGTTCAGTGTTTTCTTATATCTGGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTTGTAACTATGACATTCTGTTCAGTGTTTTCTTATATCTGGAA  998

seq1  CAGAAGCTGATATTTGGTTATCAGTAAACAAAAGTGTGTCCATTATGTCC  1050
      ||||||||||||||||||||||||| ||||||||||||| |||||||| |
seq2  CAGAAGCTGATATTTGGTTATCAGT-AACAAAAGTGTGT-CATTATGTTC  1046

seq1  TATAAGAATTAATAAAATAAATTTCTGAGTCTCTCTTGATCAGTTAACAT  1100
      | |||| ||||||||| |||  |||||||| |||||||||| | ||||||
seq2  TTTAAGGATTAATAAATTAA--TTCTGAGT-TCTCTTGATC-GGTAACAT  1092

seq1  GTGTAGGGCTGAACTTA-TTTTTAGCAAACCAGTGACCATGTAGT---TG  1146
      ||||||||||||||||| ||||||||||| |||| | ||||||||   | 
seq2  GTGTAGGGCTGAACTTATTTTTTAGCAAA-CAGT-AACATGTAGTGCCTT  1140

seq1  CTTTTC  1152
      ||||||
seq2  CTTTTC  1146

seq1: chr3_41059546_41059737
seq2: B6Ng01-059L14.g_70_261 (reverse)

seq1  TGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CA  49
      ||||||||||||| |||||||||||||| ||||||| ||||||||||  |
seq2  TGCAAAGCTTCTGTAAGGCAAAAGACACTGTCAATAGGACAAAAAGGTGA  50

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  99
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCAACAGATTGGGAAAGGATCTTTACCAATCCTAAATCAGATAGGGGACT  100

seq1  AATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAA  149
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  AATATCCAATATATATAAAGAACTCAAGAAGCTGGATTCCAGAAAATCAA  150

seq1  ATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  192
      |||| ||||||||||||||||   ||||| |||||||||||||
seq2  ATAA-CCCATTAAAAAATGGGCAACAGAGATAAACAAAGAATT  192