BAC Information

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BAC

Clone NameB6Ng01-059O15
Chromosome12 (Build37)
Map Location 54,829,387 - 55,017,344
singlet/doubletdoublet
Overlap geneNpas3
Upstream geneAkap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059O15.bB6Ng01-059O15.g
ACCDH881053DH881054
length1,073590
definitionDH881053|Mus musculus domesticus DNA, BAC clone: B6Ng01-059O15, 5' end.DH881054|Mus musculus domesticus DNA, BAC clone: B6Ng01-059O15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,829,387 - 54,830,473)(55,016,755 - 55,017,344)
sequence
gaattccagtgaccaagtttatagtcaccgctagtaaaaaacaaacaaac
agcgaaagaaacacaattgttgtttatgttacaaaacattcacatttcac
taaattattctattttttcctcaatagtctgaatgaatgaaattatactt
taagtcatcttctaagtttacatgattttaaaggtgggtagaagaagtga
ccgaattatcctttaatcattgacattagggtatgtacatcttcatattt
tcccctttgcatatataaatatgtatgtaagtttaaaacctttcattgtg
attctctgggcctttagcttctcgcagtactctccgttgagatgattcaa
tccaagaacaagcagaagacatcattttcttccattcctggaaagtcact
cctctcctaaagatatgtaaaaccatgtatcaaatgtaagttgagctatc
tttgagaaatcttcagaaggaaaagccagctactataggcttcaccaact
acagagtaatgtgcagcatttttgaaggttacaggtgcagcaccccctta
tctcacactgccctcaccactgcacatgactgtctctgtaagtgccaaca
tgtaggtgtttcaatgccttaccatgtctgtctgacataaactaatgatg
ttggctgctaaacatggtgacaccatttgatttaataggatgctaattaa
tgactcctagaagagacttgatcctccttttcagcagcctctgtcatgta
tgtgcaaaaagtgatggctgttctctgtgtagcttctagtggtgatggga
acacaaggaaagagcccatcactattagtagagcaaaggaaggcctggta
aggcacaggggcttcattttcttctgactgctccaaaacttggtctttgt
gggaaggaagatggcatttttctcgagggcagtaatcgttcgtactattg
catagtgtcaatatgatgatcccatttcatcaaacatatctcatcagaga
gctttgatgggaggaatttttggaggtttaggaaggtaatctgtgagaca
tggctccttctgaatgcatagct
gaattcattttctccgtccacccaggccatttggagggaagagcaaacca
ggagactaggggttcagcgaggtctccctgagatctcaaacgatatgcta
ccccatgaccttggaaagttttcttgctaattaaaaaaataggtgcgcct
tgctatccccactggcaagcatgaacaatgcagtttttctttaaaaagac
agagcaggtctaagattgcttttattttcccgcagcagctttaaacagag
ccttactctgttcctgcaggaatctaagtgtctagattgagatttttcaa
tcttgtaccgggacttaaaagaaatgatctataaacaatcacaaattgca
aaagtaacgattagtgccataagaaagattaaacattcctgggccattgt
tctctctcccttctcatccccagtccacattcctctctgtctccttattg
aaatcacttatctattgctgcttgctgcatctgaataacggctggctgct
agaacatgcctggcttaaaacaatcaataaactctcattttcttttaaca
gtttaatattaatctgggggatggtggggaatggtaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_54829387_54830473
seq2: B6Ng01-059O15.b_50_1122

seq1  GAATTCCAGTGACCAAGTTTATAGTCACCGCTAGTAAAAAACAAACAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGACCAAGTTTATAGTCACCGCTAGTAAAAAACAAACAAAC  50

seq1  AGCGAAAGAAACACAATTGTTGTTTATGTTACAAAACATTCACATTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAAAGAAACACAATTGTTGTTTATGTTACAAAACATTCACATTTCAC  100

seq1  TAAATTATTCTATTTTTTCCTCAATAGTCTGAATGAATGAAATTATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTCTATTTTTTCCTCAATAGTCTGAATGAATGAAATTATACTT  150

seq1  TAAGTCATCTTCTAAGTTTACATGATTTTAAAGGTGGGTAGAAGAAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATCTTCTAAGTTTACATGATTTTAAAGGTGGGTAGAAGAAGTGA  200

seq1  CCGAATTATCCTTTAATCATTGACATTAGGGTATGTACATCTTCATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAATTATCCTTTAATCATTGACATTAGGGTATGTACATCTTCATATTT  250

seq1  TCCCCTTTGCATATATAAATATGTATGTAAGTTTAAAACCTTTCATTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTGCATATATAAATATGTATGTAAGTTTAAAACCTTTCATTGTG  300

seq1  ATTCTCTGGGCCTTTAGCTTCTCGCAGTACTCTCCGTTGAGATGATTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTGGGCCTTTAGCTTCTCGCAGTACTCTCCGTTGAGATGATTCAA  350

seq1  TCCAAGAACAAGCAGAAGACATCATTTTCTTCCATTCCTGGAAAGTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAACAAGCAGAAGACATCATTTTCTTCCATTCCTGGAAAGTCACT  400

seq1  CCTCTCCTAAAGATATGTAAAACCATGTATCAAATGTAAGTTGAGCTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCTAAAGATATGTAAAACCATGTATCAAATGTAAGTTGAGCTATC  450

seq1  TTTGAGAAATCTTCAGAAGGAAAAGCCAGCTACTATAGGCTTCACCAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAAATCTTCAGAAGGAAAAGCCAGCTACTATAGGCTTCACCAACT  500

seq1  ACAGAGTAATGTGCAGCATTTTTGAAGGTTACAGGTGCAGCACCCCCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAATGTGCAGCATTTTTGAAGGTTACAGGTGCAGCACCCCCTTA  550

seq1  TCTCACACTGCCCTCACCACTGCACATGACTGTCTCTGTAAGTGCCAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACTGCCCTCACCACTGCACATGACTGTCTCTGTAAGTGCCAACA  600

seq1  TGTAGGTGTTTCAATGCCTTACCATGTCTGTCTGACATAAACTAATGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTGTTTCAATGCCTTACCATGTCTGTCTGACATAAACTAATGATG  650

seq1  TTGGCTGCTAAACATGGTGACACCATTTGATTTAATAGGATGCTAATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGCTAAACATGGTGACACCATTTGATTTAATAGGATGCTAATTAA  700

seq1  TGACTCCTAGAAGAGACTTGATCCTCCTTTTCAGCAGCCTCTGTCATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCCTAGAAGAGACTTGATCCTCCTTTTCAGCAGCCTCTGTCATGTA  750

seq1  TGTGCAAAAAGTGATGGCTGTTCTCTGTGTAGCTTCTAGTGGTGATGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAAAGTGATGGCTGTTCTCTGTGTAGCTTCTAGTGGTGATGGGA  800

seq1  ACACAAGGAAAGAGCCCATCACTATTAGTAGAGCAAAGGAAGGCCTGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGAAAGAGCCCATCACTATTAGTAGAGCAAAGGAAGGCCTGGTA  850

seq1  AGGCACAGGGGCTCCATCTTCTTCTGACTGCTCCAAAACTTGGTCTTTGT  900
      ||||||||||||| ||| ||||||||||||||||||||||||||||||||
seq2  AGGCACAGGGGCTTCATTTTCTTCTGACTGCTCCAAAACTTGGTCTTTGT  900

seq1  GGGAAGGAAGATGGCAATTTTCCCGAGGGCAGTAATCGTTCGTACTATTG  950
      |||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  GGGAAGGAAGATGGCATTTTTCTCGAGGGCAGTAATCGTTCGTACTATTG  950

seq1  CATAGTTGTCATATATTGATGATCCCATTTCAATCAAACATATCTCATCC  1000
      ||||| ||||| ||| ||||||||||||||| |||||||||||||||| |
seq2  CATAG-TGTCA-ATA-TGATGATCCCATTTC-ATCAAACATATCTCAT-C  995

seq1  AGAGAGCCTTTGATGGGAGGAATTTTTTGGAAGGGTTTAGGAAGGTTAAA  1050
      |||||| ||||||||||||||| ||||||||  |||||||||||||  ||
seq2  AGAGAG-CTTTGATGGGAGGAA-TTTTTGGA--GGTTTAGGAAGGT--AA  1039

seq1  TCTGTGAGACATGGCTTCCATCTGGAATGCATTAGCT  1087
      ||||||||||||||| ||| ||| ||||||| |||||
seq2  TCTGTGAGACATGGC-TCCTTCT-GAATGCA-TAGCT  1073

seq1: chr12_55016755_55017344
seq2: B6Ng01-059O15.g_72_661 (reverse)

seq1  CATTTACCATTCCCCACCATCCCCCAGATTAATATTAAACTGTTAAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCATTCCCCACCATCCCCCAGATTAATATTAAACTGTTAAAAGA  50

seq1  AAATGAGAGTTTATTGATTGTTTTAAGCCAGGCATGTTCTAGCAGCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGAGTTTATTGATTGTTTTAAGCCAGGCATGTTCTAGCAGCCAGC  100

seq1  CGTTATTCAGATGCAGCAAGCAGCAATAGATAAGTGATTTCAATAAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATTCAGATGCAGCAAGCAGCAATAGATAAGTGATTTCAATAAGGAG  150

seq1  ACAGAGAGGAATGTGGACTGGGGATGAGAAGGGAGAGAGAACAATGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGGAATGTGGACTGGGGATGAGAAGGGAGAGAGAACAATGGCCC  200

seq1  AGGAATGTTTAATCTTTCTTATGGCACTAATCGTTACTTTTGCAATTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATGTTTAATCTTTCTTATGGCACTAATCGTTACTTTTGCAATTTGT  250

seq1  GATTGTTTATAGATCATTTCTTTTAAGTCCCGGTACAAGATTGAAAAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTTTATAGATCATTTCTTTTAAGTCCCGGTACAAGATTGAAAAATC  300

seq1  TCAATCTAGACACTTAGATTCCTGCAGGAACAGAGTAAGGCTCTGTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTAGACACTTAGATTCCTGCAGGAACAGAGTAAGGCTCTGTTTAA  350

seq1  AGCTGCTGCGGGAAAATAAAAGCAATCTTAGACCTGCTCTGTCTTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGCGGGAAAATAAAAGCAATCTTAGACCTGCTCTGTCTTTTTAA  400

seq1  AGAAAAACTGCATTGTTCATGCTTGCCAGTGGGGATAGCAAGGCGCACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAACTGCATTGTTCATGCTTGCCAGTGGGGATAGCAAGGCGCACCT  450

seq1  ATTTTTTTAATTAGCAAGAAAACTTTCCAAGGTCATGGGGTAGCATATCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTAATTAGCAAGAAAACTTTCCAAGGTCATGGGGTAGCATATCG  500

seq1  TTTGAGATCTCAGGGAGACCTCGCTGAACCCCTAGTCTCCTGGTTTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGATCTCAGGGAGACCTCGCTGAACCCCTAGTCTCCTGGTTTGCTC  550

seq1  TTCCCTCCAAATGGCCTGGGTGGACGGAGAAAATGAATTC  590
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCAAATGGCCTGGGTGGACGGAGAAAATGAATTC  590