BAC Information

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BAC

Clone NameB6Ng01-060A15
Chromosome12 (Build37)Y (Build37)
Map Location 61,705,452 - 61,706,1181,120,651 - 1,120,705
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC665644, EG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060A15.bB6Ng01-060A15.g
ACCDH881137DH881138
length64655
definitionDH881137|Mus musculus domesticus DNA, BAC clone: B6Ng01-060A15, 5' end.DH881138|Mus musculus domesticus DNA, BAC clone: B6Ng01-060A15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,705,452 - 61,706,118)(1,120,651 - 1,120,705)
sequence
gaattcagtatgtatatatataatgataaagaagtcatggatttgagaag
gaatggagcaaaataggaggatttggagttagaaggggggagaggaagtt
agaagaaatgtcgtaaataaagtacttgcatattaaattatcaaatataa
agttagtgaaaataaaaatagttccttgttccaatttacgtgttaatgtt
tcatggacatcatgtacatattttaattccttccgcattttccattaatt
tgctcatatgcttccaaatatttatagtgatattttaagtcacaacattt
tgaacactatttgcaatattttttattagtaaaatttccttaaatgactt
ttttttgtaataaatacttggcaactctcctcgttggtttttccaacatc
agttgcttcataaggcctcttttctttcttcaggggatttatgatctaaa
aatagtcttttctcacatacatatttccttgcatgatctattaggtatat
actcaattatatatggttgctgtggtctgacaggcatgtttaaatatgct
ttatatgttgcataacatgctttaattaatatcacatggaattccccctt
gaagcatcaaaaagagaaaataaatgacttatacgcaaaaataaat
cagggccaaaaagggggagtgggtgggcaggggagtgggggtgggtggat
atggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61705452_61706118
seq2: B6Ng01-060A15.b_47_692 (reverse)

seq1  ATTTA--TTTGCAGTAATAAGTCATTTTATTTATCTTCTCTTTGTATTGC  48
      |||||  ||||| || |||||||     |||||| |||||||| |  |||
seq2  ATTTATTTTTGC-GT-ATAAGTC-----ATTTATTTTCTCTTTTTGATGC  43

seq1  ATTCAATGTGTGGATATTCCACTGTGGTAATTAAATTAGAAGCATTGTTA  98
       |||||   | ||  |||||| |||| ||  | ||||| ||||| |||||
seq2  -TTCAA---GGGGGAATTCCA-TGTGATA--TTAATTA-AAGCA-TGTTA  84

seq1  TGCAACATATAGAGACATATTTAAAACATGCCTGTCAAGACCACAGCAAC  148
      ||||||||||| || ||||||| ||||||||||||| |||||||||||||
seq2  TGCAACATATAAAG-CATATTT-AAACATGCCTGTC-AGACCACAGCAAC  131

seq1  CAGTATATGAATTGAGTATATACCTAATGAGATCATGCAAGGAAATATGT  198
      || ||||| ||||||||||||||||||| |||||||||||||||||||||
seq2  CA-TATAT-AATTGAGTATATACCTAAT-AGATCATGCAAGGAAATATGT  178

seq1  ATGTGAGAAAGAGACTATTTTTAGATCATAAATCCCCTGAAGAAAGAAAA  248
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAAA-AGACTATTTTTAGATCATAAATCCCCTGAAGAAAGAAAA  227

seq1  GAGGCCTTATGAAGCAACTGATGTTGGAAAAACCAACGAGGAGAGTTGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTTATGAAGCAACTGATGTTGGAAAAACCAACGAGGAGAGTTGCC  277

seq1  AAGTATTTATTACAAAAAAAAGTCATTTAAGGAAATTTTACTAATAAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTATTACAAAAAAAAGTCATTTAAGGAAATTTTACTAATAAAAA  327

seq1  ATATTGCAAATAGTGTTCAAAATGTTGTGACTTAAAATATCACTATAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCAAATAGTGTTCAAAATGTTGTGACTTAAAATATCACTATAAAT  377

seq1  ATTTGGAAGCATATGAGCAAATTAATGGAAAATGCGGAAGGAATTAAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAGCATATGAGCAAATTAATGGAAAATGCGGAAGGAATTAAAAT  427

seq1  ATGTACATGATGTCCATGAAACATTAACACGTAAATTGGAACAAGGAACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATGATGTCCATGAAACATTAACACGTAAATTGGAACAAGGAACT  477

seq1  ATTTTTATTTTCACTAACTTTATATTTGATAATTTAATATGCAAGTACTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTTCACTAACTTTATATTTGATAATTTAATATGCAAGTACTT  527

seq1  TATTTACGACATTTCTTCTAACTTCCTCTCCCCCCTTCTAACTCCAAATC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACGACATTTCTTCTAACTTCCTCTCCCCCCTTCTAACTCCAAATC  577

seq1  CTCCTATTTTGCTCCATTCCTTCTCAAATCCATGACTTCTTTATCATTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATTTTGCTCCATTCCTTCTCAAATCCATGACTTCTTTATCATTAT  627

seq1  ATATATACATACTGAATTC  667
      |||||||||||||||||||
seq2  ATATATACATACTGAATTC  646

seq1: chrY_1120651_1120705
seq2: B6Ng01-060A15.g_74_128 (reverse)

seq1  CCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATATCCACCCACCCCCACTCCCCTGCCCACCCACTCCCCCTTTTTGG  50

seq1  CCCTG  55
      |||||
seq2  CCCTG  55