BAC Information

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BAC

Clone NameB6Ng01-060B20
Chromosome12 (Build37)
Map Location 14,229,856 - 14,342,762
singlet/doubletdoublet
Overlap genenone
Upstream geneDdx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
Downstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060B20.bB6Ng01-060B20.g
ACCDH881188DH881189
length1,1141,046
definitionDH881188|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B20, 5' end.DH881189|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,341,636 - 14,342,762)(14,229,856 - 14,230,911)
sequence
gaattctattactatttaacatgacagaaattaaaactgttgaatgttaa
atgtgtttaattttaaaatattatatagcacattgacataagaggaatac
attgtttaaaaatacctctttgcataaagggaaacagtattcatggcata
gctttctaatttcatggcatctctagtgaatgatgtgaagttagtgtctt
gtaaaacaatcctgcttttatattcctgttgtgatgttacatcatttttg
ctcaaataaaagtaaattcagcctcagatagaaatgagattggatatttg
atattgtatttccagtgttaattattagataatagatgcaaaataattta
agtacagttgaatatgattcattcgttctttgtcccttcaaatgagtctg
atgtcccatgtaagaaaaatgactagttaactcaaacctgaaagaaaaat
gtaaaattattttataaaaaggctctaatcttcatcaaaactgctttata
aatacttttcattgcacaaggcagaattctcaattgaaaatctaataata
ttagttgtgtttaaggtttcttttaatgaagttaggttaatttttgtttg
tttctttcttctcttagtgaaatctgcatccactgagtttttcagtctat
gcaaattgaactgcaaaagtggcaaatagttctgtgtggagacactggaa
tcttctgaattgtcctggtcactcagaattatacagaatacactcaatat
tgaattaatccattttggaagtgggaaaattagaatataggttttcatta
gacatcataagatttggaagtgtgaaatccaggatcccaagacaagtgtt
gaaacttcacacagttcatggttgacatcaaatcccatgtttcaccacta
atgttttgagtgatttacagaatattcagaaatactgattcaagtatact
atgctttgatcaattattattgatcaaatatatatgcttgatcatatctt
tggaacatagccccagagtacatgaaactgtattataatatgtgtttaaa
aatgacagaaaagtcaggtagtggagcataccttatccagcatgggagtc
agagcaggaggatt
gaattctttattcttaagccacaaacatcttgtttttcttaagcttcact
tccgtctaatttctgtcgacccttttttattgtgtttatttgactgtgtc
cttaaatgcttatgtctttttaaaattgaagagcttggtgaactgcttgt
aaaaatgagcattcacatctattttctttcactatgatgctttgtgattc
ggtattatcttttttttagcgccataacaatctcatggaagaggaagttt
agggaatatcctacaaatcatggagcagagactgcctggtttgcagacaa
tcattcagctgcttttcagatgagaaaattttgtgtctcttaagcttagt
ttcatttttaacagcaatctctatattctttctatcaaatcagtgtctaa
ctctgtgaccatgtctaaggccatccaaccactttggaagaaatatgggt
agttcattgcatccctaaattcaacctagtttcaccctccagctcctatg
attgtttctgatggccaccacctttgtagaattctttatatttcccattt
ccctttttaacaaatgctccctcctcagtgtgtctaccttcctgcttatc
cctgaactcttagaatgatacagccaaatttccagcctgttgagctttcc
aaattggcagaaacgtttcttctttgattcccacactggaatcatagctg
tgaaacgtgtctaacacctgttcctaggtgatttctcagttttagactaa
tttcagtcatgttgaaacaaaacagacttgtgaaacataagctcagattt
tagaagctaagattggtgtactttttttttcttattctttcatactgttc
tagaaggagaaatggcttgtagaacagatgaatatttagagatagctctt
gcactgacatatttgatggtcagagaaatgggaggaaagcatcatctgat
tcgatcctctcagtatcttcttcagtaggaaagaagagatgcatcatcac
tgtattctgtgacagataagcatgaagcacagttctgtaacagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_14341636_14342762
seq2: B6Ng01-060B20.b_44_1157 (reverse)

seq1  AATCCTCCTGCCTCTGCCTCCCCAATGCTGGAATTAAAGGTATGCTCCAC  50
      |||||||||| ||||| |||||  ||||||||    ||||||||||||||
seq2  AATCCTCCTG-CTCTGACTCCC--ATGCTGGA---TAAGGTATGCTCCAC  44

seq1  TACCTGGCTTTTTCTGTCATTTTTTAAACACATATTAATAATACAGTTTC  100
      |||||| | |||||||||| |||||||||||||||| |||||||||||||
seq2  TACCTGAC-TTTTCTGTCA-TTTTTAAACACATATT-ATAATACAGTTTC  91

seq1  ATGTTACTCTGGGGGCTATGTTCCAAAGATAATGATCAAAGCATATATAT  150
      ||| |||||| ||||||||||||||||||| |||||| ||||||||||||
seq2  ATG-TACTCT-GGGGCTATGTTCCAAAGAT-ATGATC-AAGCATATATAT  137

seq1  TTGATCAATAATAATTGATCAAAGCATAGTATACTTGAATCAGTATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAATAATAATTGATCAAAGCATAGTATACTTGAATCAGTATTTCT  187

seq1  GAATATTCTGTAAATCACTCAAAACATTAGTGGTGAAACATGGGATTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCTGTAAATCACTCAAAACATTAGTGGTGAAACATGGGATTTGA  237

seq1  TGTCAACCATGAACTGTGTGAAGTTTCAACACTTGTCTTGGGATCCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACCATGAACTGTGTGAAGTTTCAACACTTGTCTTGGGATCCTGGA  287

seq1  TTTCACACTTCCAAATCTTATGATGTCTAATGAAAACCTATATTCTAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACACTTCCAAATCTTATGATGTCTAATGAAAACCTATATTCTAATT  337

seq1  TTCCCACTTCCAAAATGGATTAATTCAATATTGAGTGTATTCTGTATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACTTCCAAAATGGATTAATTCAATATTGAGTGTATTCTGTATAAT  387

seq1  TCTGAGTGACCAGGACAATTCAGAAGATTCCAGTGTCTCCACACAGAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTGACCAGGACAATTCAGAAGATTCCAGTGTCTCCACACAGAACT  437

seq1  ATTTGCCACTTTTGCAGTTCAATTTGCATAGACTGAAAAACTCAGTGGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCACTTTTGCAGTTCAATTTGCATAGACTGAAAAACTCAGTGGAT  487

seq1  GCAGATTTCACTAAGAGAAGAAAGAAACAAACAAAAATTAACCTAACTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATTTCACTAAGAGAAGAAAGAAACAAACAAAAATTAACCTAACTTC  537

seq1  ATTAAAAGAAACCTTAAACACAACTAATATTATTAGATTTTCAATTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAGAAACCTTAAACACAACTAATATTATTAGATTTTCAATTGAGA  587

seq1  ATTCTGCCTTGTGCAATGAAAAGTATTTATAAAGCAGTTTTGATGAAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCTTGTGCAATGAAAAGTATTTATAAAGCAGTTTTGATGAAGAT  637

seq1  TAGAGCCTTTTTATAAAATAATTTTACATTTTTCTTTCAGGTTTGAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTTTTTATAAAATAATTTTACATTTTTCTTTCAGGTTTGAGTTA  687

seq1  ACTAGTCATTTTTCTTACATGGGACATCAGACTCATTTGAAGGGACAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTCATTTTTCTTACATGGGACATCAGACTCATTTGAAGGGACAAAG  737

seq1  AACGAATGAATCATATTCAACTGTACTTAAATTATTTTGCATCTATTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAATGAATCATATTCAACTGTACTTAAATTATTTTGCATCTATTATC  787

seq1  TAATAATTAACACTGGAAATACAATATCAAATATCCAATCTCATTTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTAACACTGGAAATACAATATCAAATATCCAATCTCATTTCTAT  837

seq1  CTGAGGCTGAATTTACTTTTATTTGAGCAAAAATGATGTAACATCACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTGAATTTACTTTTATTTGAGCAAAAATGATGTAACATCACAAC  887

seq1  AGGAATATAAAAGCAGGATTGTTTTACAAGACACTAACTTCACATCATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATAAAAGCAGGATTGTTTTACAAGACACTAACTTCACATCATTC  937

seq1  ACTAGAGATGCCATGAAATTAGAAAGCTATGCCATGAATACTGTTTCCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGATGCCATGAAATTAGAAAGCTATGCCATGAATACTGTTTCCCT  987

seq1  TTATGCAAAGAGGTATTTTTAAACAATGTATTCCTCTTATGTCAATGTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAAAGAGGTATTTTTAAACAATGTATTCCTCTTATGTCAATGTGC  1037

seq1  TATATAATATTTTAAAATTAAACACATTTAACATTCAACAGTTTTAATTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATATTTTAAAATTAAACACATTTAACATTCAACAGTTTTAATTT  1087

seq1  CTGTCATGTTAAATAGTAATAGAATTC  1127
      |||||||||||||||||||||||||||
seq2  CTGTCATGTTAAATAGTAATAGAATTC  1114

seq1: chr12_14229856_14230911
seq2: B6Ng01-060B20.g_66_1111

seq1  GAATTCTTTATTCTTAAGCCACAAACATCTTGTTTTTCTTAAGCTTCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTCTTAAGCCACAAACATCTTGTTTTTCTTAAGCTTCACT  50

seq1  TCCGTCTAATTTCTGTCGACCCTTTTTTATTGTGTTTATTTGACTGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCTAATTTCTGTCGACCCTTTTTTATTGTGTTTATTTGACTGTGTC  100

seq1  CTTAAATGCTTATGTCTTTTTAAAATTGAAGAGCTTGGTGAACTGCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATGCTTATGTCTTTTTAAAATTGAAGAGCTTGGTGAACTGCTTGT  150

seq1  AAAAATGAGCATTCACATCTATTTTCTTTCACTATGATGCTTTGTGATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGAGCATTCACATCTATTTTCTTTCACTATGATGCTTTGTGATTC  200

seq1  GGTATTATCTTTTTTTTAGCGCCATAACAATCTCATGGAAGAGGAAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATCTTTTTTTTAGCGCCATAACAATCTCATGGAAGAGGAAGTTT  250

seq1  AGGGAATATCCTACAAATCATGGAGCAGAGACTGCCTGGTTTGCAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATATCCTACAAATCATGGAGCAGAGACTGCCTGGTTTGCAGACAA  300

seq1  TCATTCAGCTGCTTTTCAGATGAGAAAATTTTGTGTCTCTTAAGCTTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGCTGCTTTTCAGATGAGAAAATTTTGTGTCTCTTAAGCTTAGT  350

seq1  TTCATTTTTAACAGCAATCTCTATATTCTTTCTATCAAATCAGTGTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTTAACAGCAATCTCTATATTCTTTCTATCAAATCAGTGTCTAA  400

seq1  CTCTGTGACCATGTCTAAGGCCATCCAACCACTTTGGAAGAAATATGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGACCATGTCTAAGGCCATCCAACCACTTTGGAAGAAATATGGGT  450

seq1  AGTTCATTGCATCCCTAAATTCAACCTAGTTTCACCCTCCAGCTCCTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATTGCATCCCTAAATTCAACCTAGTTTCACCCTCCAGCTCCTATG  500

seq1  ATTGTTTCTGATGGCCACCACCTTTGTAGAATTCTTTATATTTCCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCTGATGGCCACCACCTTTGTAGAATTCTTTATATTTCCCATTT  550

seq1  CCCTTTTTAACAAATGCTCCCTCCTCAGTGTGTCTACCTTCCTGCTTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTTAACAAATGCTCCCTCCTCAGTGTGTCTACCTTCCTGCTTATC  600

seq1  CCTGAACTCTTAGAATGATACAGCCAAATTTCCAGCCTGTTGAGCTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTCTTAGAATGATACAGCCAAATTTCCAGCCTGTTGAGCTTTCC  650

seq1  AAATTGGCAGAAACGTTTCTTCTTTGATTCCCACACTGGAATCATAGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGCAGAAACGTTTCTTCTTTGATTCCCACACTGGAATCATAGCTG  700

seq1  TGAAACGTGTCTAACACCTGTTCCTAGGTGATTTCTCAGTTTTAGACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACGTGTCTAACACCTGTTCCTAGGTGATTTCTCAGTTTTAGACTAA  750

seq1  TTTCAGTCATGTTGAAACAAAACAGACTTGTGAAACATAAGCTCAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTCATGTTGAAACAAAACAGACTTGTGAAACATAAGCTCAGATTT  800

seq1  TAGAAGCTAAGATTGGTGTAC-TTTTTTTTCTTATTCTTTCATACTGTTC  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGAAGCTAAGATTGGTGTACTTTTTTTTTCTTATTCTTTCATACTGTTC  850

seq1  TAGAAGGAGAAATGGCTTGTAGAACAGATGAATATTTAGAGATAGCTCTT  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TAGAAGGAGAAATGGCTTGTAGAACAGATGAATATTTAGAGATAGCTC-T  899

seq1  TGCAACTGACATATTTGATGGTCAGAGAAATGGGAGGAAAGCATCACCTG  949
      ||| |||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGC-ACTGACATATTTGATGGTCAGAGAAATGGGAGGAAAGCATCATCTG  948

seq1  ATTCGATCCTCTCAGTATCTTCTTCAGTAAGAAAGAAGAGATGCAACCAT  999
      ||||||||||||||||||||||||||||| |||||||||||||| | |||
seq2  ATTCGATCCTCTCAGTATCTTCTTCAGTAGGAAAGAAGAGATGC-ATCAT  997

seq1  CAACCTGTTATTCTGTTGACAGATAAAGCATGAAAGCCACAGTTCTGTAA  1049
      ||  ||| ||||||| |||||||| |||||||||   ||||||||||| |
seq2  CA--CTG-TATTCTG-TGACAGAT-AAGCATGAA--GCACAGTTCTGT-A  1039

seq1  ACAGTGG  1056
      |||||||
seq2  ACAGTGG  1046