BAC Information

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BAC

Clone NameB6Ng01-060F23
Chromosome12 (Build37)14 (Build37)
Map Location 93,146,028 - 93,147,12938,552,176 - 38,552,751
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681
Downstream geneLOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060F23.bB6Ng01-060F23.g
ACCDH881362DH881363
length1,096826
definitionDH881362|Mus musculus domesticus DNA, BAC clone: B6Ng01-060F23, 5' end.DH881363|Mus musculus domesticus DNA, BAC clone: B6Ng01-060F23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,146,028 - 93,147,129)(38,552,176 - 38,552,751)
sequence
gaattcacggccaccagagaatgtggctgactttcttcacatctagagag
accaggaaacagaaaaaaaacaagaaggggggtggttttaaaacctgaag
gttcaaccccagtagaccacttctcccaccttttaaaatctcccaaaaca
gcaccactagctgatgactgtgtgttccaaacatgagccgatgggagaca
atcaagtcacaacaaagactgaagagatggacactggtctcttggagttc
tgtggcctgatctcacataactctctcacagtctctccaggacagagtca
cattattaattaattagttaattaaaaattaaaaagttacaacttcccaa
cctaaaaatgaagtaatttaatttaaaagtgaatttgcaaatgagtggca
tacagcatgtgtgattttctccaacatagcaaattcaatctttccctgtt
cttgggaagagctactgtctctgggattcatagtcaagaaatagggaggg
ggaaatggctagtgttcaaggagcactcaagtcctctatatggtaacttc
aagggaagctaagccgataacaagtgaaatacttgtcttccaaaagaggg
gggatgtaaatttcacaaacctcattttatttgtccctagaaaataccaa
gctagaggagaaggagctgaggggataagacatgacaacggctgaggggt
aaatcttcaggaaataactctaccatttttccttcggcttcttcacctct
aacagcgtgcatgtcacagagcggaaggagcacatagcacacactgtgag
cctagacaatatggatttctgctctacagttaatggcccccatttggtgc
tggaaagctgtggtagagaaaacttctctcagatacaggaactagcatag
tttccaaaggaaggagtagcctgcattctctcagtgctcttttaaaggaa
gcgtagccttctttcgttttctcacacattgccagaacctcctacttgtc
tagttcctttcttctatctactctttcagcattttggtgataaaatactt
tcaaatatcaagcttcatcgcctatcaggatccttctaatatcatc
gaattcctaaatgtatacaagtagtttccagctgtctgaaatgctgaaaa
tatggctctgcaaacttcacgtgtcacaggctaactgtactaggagaaga
aggcaggcttgaaacagattaatgtcagggaaacattccttctgggttaa
ctatgagatcactgataactaaaggtcataaactgggaatgggcaatttg
ttgtaggtacaaggacagaaaataaaatattgactgatttatctatacaa
aacttcaaaagtaatgaggcacaaggcagatgatgtgtctcttggcaaaa
ctgtggcaacttctaacacaagaatcatcgttttaaacttacttacggag
ctagtaacagatagtgaacgtttagtcaggtactaatcttaatggaaata
catgtaaacgtttctgatgtaattccttaccatttttgtgacttgagtta
atgtcttaaacttgcaatgaacttatgaactgtaaggacgtttggaaaac
catgtgatcaattctcctgaaaaaatataggaactaagaatgacaataag
ggagaagctttctcttactttcagccataaaaaggtagaagccttttctt
tctctgagcaataaaagttagcgcttcttttttatttattttctgtgttg
gcactggctcttcggaacttgcttgtgggagcttttgttccagccaccaa
atgtatatatatatgcatgtgtaactataggtgtgtgtatgcaagtattc
atgaacacttgtggagctgatgagacaggtggttgggtctgaccagtcag
tgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93146028_93147129
seq2: B6Ng01-060F23.b_47_1142 (reverse)

seq1  GATGATATGTAGAAGGATCCTGATAGCGGATGAAGCCTGATATTTGAAAG  50
      |||||||| |||||||||||||||||  |||||||| |||||||||||||
seq2  GATGATAT-TAGAAGGATCCTGATAGGCGATGAAGCTTGATATTTGAAAG  49

seq1  GTATTTATCACCAAAAATGCTGAAAGAGTAGATAGGAGAAAGGAACTAGA  100
         ||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  TATTTTATCACC-AAAATGCTGAAAGAGTAGATAGAAGAAAGGAACTAGA  98

seq1  CAAGTAAGGAGGTTCTGGCAATGTGTTGAGAAAAACGAAAGAAGGCCTAC  150
      ||||| ||||||||||||||||||| |||| |||||||||||||| ||||
seq2  CAAGT-AGGAGGTTCTGGCAATGTG-TGAG-AAAACGAAAGAAGG-CTAC  144

seq1  GCTTCCTTTAAGAGAGCACTGAGAGAATGCAGGCTACTCCTTCCTTTGGA  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTTTAAAAGAGCACTGAGAGAATGCAGGCTACTCCTTCCTTTGGA  194

seq1  AACTATGCTAGTTCCTGTATCTGAGAGAAGTTTTCTCTACCACAGCTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGCTAGTTCCTGTATCTGAGAGAAGTTTTCTCTACCACAGCTTTC  244

seq1  CAGCACCAAATGGGGGCCATTAACTGTAGAGCAGAAATCCATATTGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCAAATGGGGGCCATTAACTGTAGAGCAGAAATCCATATTGTCTA  294

seq1  GGCTCACAGTGTGTGCTATGTGCTCCTTCCGCTCTGTGACATGCACGCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACAGTGTGTGCTATGTGCTCCTTCCGCTCTGTGACATGCACGCTG  344

seq1  TTAGAGGTGAAGAAGCCGAAGGAAAAATGGTAGAGTTATTTCCTGAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGTGAAGAAGCCGAAGGAAAAATGGTAGAGTTATTTCCTGAAGAT  394

seq1  TTACCCCTCAGCCGTTGTCATGTCTTATCCCCTCAGCTCCTTCTCCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCCTCAGCCGTTGTCATGTCTTATCCCCTCAGCTCCTTCTCCTCTA  444

seq1  GCTTGGTATTTTCTAGGGACAAATAAAATGAGGTTTGTGAAATTTACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTATTTTCTAGGGACAAATAAAATGAGGTTTGTGAAATTTACATC  494

seq1  CCCCCTCTTTTGGAAGACAAGTATTTCACTTGTTATCGGCTTAGCTTCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCTTTTGGAAGACAAGTATTTCACTTGTTATCGGCTTAGCTTCCC  544

seq1  TTGAAGTTACCATATAGAGGACTTGAGTGCTCCTTGAACACTAGCCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTACCATATAGAGGACTTGAGTGCTCCTTGAACACTAGCCATTT  594

seq1  CCCCCTCCCTATTTCTTGACTATGAATCCCAGAGACAGTAGCTCTTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCCCTATTTCTTGACTATGAATCCCAGAGACAGTAGCTCTTCCCA  644

seq1  AGAACAGGGAAAGATTGAATTTGCTATGTTGGAGAAAATCACACATGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGGGAAAGATTGAATTTGCTATGTTGGAGAAAATCACACATGCTG  694

seq1  TATGCCACTCATTTGCAAATTCACTTTTAAATTAAATTACTTCATTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACTCATTTGCAAATTCACTTTTAAATTAAATTACTTCATTTTTA  744

seq1  GGTTGGGAAGTTGTAACTTTTTAATTTTTAATTAACTAATTAATTAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGAAGTTGTAACTTTTTAATTTTTAATTAACTAATTAATTAATAA  794

seq1  TGTGACTCTGTCCTGGAGAGACTGTGAGAGAGTTATGTGAGATCAGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTGTCCTGGAGAGACTGTGAGAGAGTTATGTGAGATCAGGCCA  844

seq1  CAGAACTCCAAGAGACCAGTGTCCATCTCTTCAGTCTTTGTTGTGACTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTCCAAGAGACCAGTGTCCATCTCTTCAGTCTTTGTTGTGACTTG  894

seq1  ATTGTCTCCCATCGGCTCATGTTTGGAACACACAGTCATCAGCTAGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTCCCATCGGCTCATGTTTGGAACACACAGTCATCAGCTAGTGGT  944

seq1  GCTGTTTTGGGAGATTTTAAAAGGTGGGAGAAGTGGTCTACTGGGGTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTGGGAGATTTTAAAAGGTGGGAGAAGTGGTCTACTGGGGTTGA  994

seq1  ACCTTCAGGTTTTAAAACCACCCCCCTTCTTGTTTTTTTTCTGTTTCCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAGGTTTTAAAACCACCCCCCTTCTTGTTTTTTTTCTGTTTCCTG  1044

seq1  GTCTCTCTAGATGTGAAGAAAGTCAGCCACATTCTCTGGTGGCCGTGAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCTAGATGTGAAGAAAGTCAGCCACATTCTCTGGTGGCCGTGAAT  1094

seq1  TC  1102
      ||
seq2  TC  1096

seq1: chr14_38552176_38552751
seq2: B6Ng01-060F23.g_766_891 (reverse)

seq1  CACACACACACACACACACACACACACTGATTTTAACTTTCTGACAGAGG  50
      |||||||||||||||||||||||||||||| |          | ||||  
seq2  CACACACACACACACACACACACACACTGACT---------GGTCAGA--  39

seq1  GTACCAACCCATATTTCTATTATAAAATGCCCTATTTGGTAGGTATGTTC  100
         ||||||   |  | | | || |  | |                    
seq2  --CCCAACC---ACCTGTCTCATCAGCTCC--------------------  64

seq1  ATAAAAGACAAATGTT-ATGCAAATA-TTGCCTGTTGTCTATTTCTTTTG  148
             |||| |||| |||  |||| |||| |                 
seq2  -------ACAAGTGTTCATG--AATACTTGCAT-----------------  88

seq1  TTAGGGACTAAAACC-ATTCTTACAAAGGGAAATGAAACACAAACATAAT  197
            ||  | ||| ||  ||||| | | | ||   | | | ||||   
seq2  ------ACACACACCTATAGTTACACATGCATAT---ATATATACAT---  126

seq1  TCATTCTAATTAATTTATAATATTTTAAAAATATTAATACTTATAATGGC  247
                                                        
seq2  --------------------------------------------------  126

seq1  TAATAACAGTAGATATCAATTAACAACCCTCCAAATGTTTTCAGCGACTA  297
                                                        
seq2  --------------------------------------------------  126

seq1  GTTTTCAGTTCAAAAATTCCAGTTGTATATTTTGTCAACACAATGTTGCT  347
                                                        
seq2  --------------------------------------------------  126

seq1  CATTTAGACCCAGGTGCACTAAGAAAATATATATATATGCAAAGTAGTAA  397
                                                        
seq2  --------------------------------------------------  126

seq1  TAAAAACACAAACTAACTTACTTCTCTAAGTATATTGAAAAGATTGTGCT  447
                                                        
seq2  --------------------------------------------------  126

seq1  TATAATACAGCCTTTTGGAAAACTTGGAATTATACATTTATGAAATAATC  497
                                                        
seq2  --------------------------------------------------  126

seq1  ATACACACACACACTATCTGTCTATCTATCTATAGAGATAGAGATATAGT  547
                                                        
seq2  --------------------------------------------------  126

seq1  ATTATACATACATACATATATATATACAT  576
                                   
seq2  -----------------------------  126