BAC Information

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BAC

Clone NameB6Ng01-060N19
Chromosome15 (Build37)12 (Build37)
Map Location 82,717,719 - 82,718,88516,914,642 - 16,914,685
singlet/doubletsingletsinglet
Overlap geneTcf20
Upstream geneAco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26
Downstream geneNfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060N19.bB6Ng01-060N19.g
ACCDH881716DH881717
length1,146758
definitionDH881716|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N19, 5' end.DH881717|Mus musculus domesticus DNA, BAC clone: B6Ng01-060N19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(82,717,719 - 82,718,885)(16,914,642 - 16,914,685)
sequence
gaattcaatttcaattcatttttgtgagatgtatgtatgtgtccatgtag
ttgtgaatatgtgagcatttgtgtacaggtttgtaaggctgtgtacaggt
tgatcatagatggttctgctacatactagttacatatcctctgtgattct
ctcttttgtgggtgggggatactcaggggagagcaggacaggattctctc
actggacctggagcccaaagatttgagactggccagcaagctccagggat
ctttctgcatatgtctgtccagagttatatgcatagaccaccatggcaca
cctggcttctatgtaggtactaagaatgtggactcaatgtttacacaaca
ggcactttatcaactgagtcatctccctaactctcccactccttaagtct
tttcaagattcccatcttacatacaggtatgtgacaaaccagaagcatca
ttacagaacttgaatatatagatttctgctggaattataaaggcagatat
tttgattctgaaaataagtgactttttaaatttagtaagcagctgcctga
acagcattctttaaaactgagtaaactcagcataaataggcaagtaacaa
actcatggaacccactaattcagacagaatcctgaacagtgaaagcaact
gaccccttcatggcatagttcttggaaggctagcagcaaaactctattct
acttattattgatttactcaaaaattatttgctgagcataaacgatatat
cctacaagttgggaatgcaatggtgcatagtccttaacttcttacatatt
ggtccttaaaaggcagttctccattctgcttttcatccctccaaggatcc
tgtacttacattactggccaggctctttcccactcaactagattaaatgc
agagccacatcacatacagtgaagagcagaactcagagccaggtgcccaa
taccaaaagtggctctgctacggactagtatgtgtctttggtcatgtcat
tcaattcttcagattcagtttgctcatcagaaaacggaggataacatatc
tagtttttctcctataaataaataacatttgtcagtactgaaactatcta
gcctttagattattcctgaaagtattacacagctttgccactggaa
gaattctaagtctcagatatggtctcagttctagatttgcatctgagacc
ggtcttcaatccgtgcactcaggaggcaggataaggaaactgaggaagaa
aggttatgagttcaaggccagcctaggcatgtgtcttagtgtttctattg
ctgtgatgaaacatcataaccaaaaaaagaaagtaagttgggtaggaaaa
ggatttggcttacagttctggatcatagtctgtcattggaggaagtcagg
actggaactcaagcagggctagaacctggaggcagaagctgatgcagagg
ccatgggggtggggttactgcctactggatagttcatcatggcttgctca
gcctgctttcctatagaacccagaaccaccagccaccatgagctgggccc
tcccccattgatcactaattgagaaaatgccttacagctgggtgtcatgg
aggcacttcctcaactgaggctccttcctttctgatgacttgtgtcaagt
tgacacaaaaccaaccagtacaactgatcccttgtcaacttgacacacaa
acacatcactattaagccacaacctttcttttcttattcatccccaagat
cccacattagaaaacataaataacttttaaaaagttccacagtctttgca
agttaaaacacattaagatttcagtatcttttttttttttggtttttcga
gataggggtttctctgtatagccctggctgtcctggaactcactttgtag
accaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82717719_82718885
seq2: B6Ng01-060N19.b_49_1194

seq1  GAATTCAATTTCAATTCATTTTTGTGAGATGTATGTATGTGTCCATGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTCAATTCATTTTTGTGAGATGTATGTATGTGTCCATGTAG  50

seq1  TTGTGAATATGTGAGCATTTGTGTACAGGTTTGTAAGGCTGTGTACAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATATGTGAGCATTTGTGTACAGGTTTGTAAGGCTGTGTACAGGT  100

seq1  TGATCATAGATGGTTCTGCTACATACTAGTTACATATCCTCTGTGATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATAGATGGTTCTGCTACATACTAGTTACATATCCTCTGTGATTCT  150

seq1  CTCTTTTGTGGGTGGGGGATACTCAGGGGAGAGCAGGACAGGATTCTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTGGGTGGGGGATACTCAGGGGAGAGCAGGACAGGATTCTCTC  200

seq1  ACTGGACCTGGAGCCCAAAGATTTGAGACTGGCCAGCAAGCTCCAGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGACCTGGAGCCCAAAGATTTGAGACTGGCCAGCAAGCTCCAGGGAT  250

seq1  CTTTCTGCATATGTCTGTCCAGAGTTATATGCATAGACCACCATGGCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCATATGTCTGTCCAGAGTTATATGCATAGACCACCATGGCACA  300

seq1  CCTGGCTTCTATGTAGGTACTAAGAATGTGGACTCAATGTTTACACAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTTCTATGTAGGTACTAAGAATGTGGACTCAATGTTTACACAACA  350

seq1  GGCACTTTATCAACTGAGTCATCTCCCTAACTCTCCCACTCCTTAAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTTATCAACTGAGTCATCTCCCTAACTCTCCCACTCCTTAAGTCT  400

seq1  TTTCAAGATTCCCATCTTACATACAGGTATGTGACAAACCAGAAGCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGATTCCCATCTTACATACAGGTATGTGACAAACCAGAAGCATCA  450

seq1  TTACAGAACTTGAATATATAGATTTCTGCTGGAATTATAAAGGCAGATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAACTTGAATATATAGATTTCTGCTGGAATTATAAAGGCAGATAT  500

seq1  TTTGATTCTGAAAATAAGTGACTTTTTAAATTTAGTAAGCAGCTGCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCTGAAAATAAGTGACTTTTTAAATTTAGTAAGCAGCTGCCTGA  550

seq1  ACAGCATTCTTTAAAACTGAGTAAACTCAGCATAAATAGGCAAGTAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTCTTTAAAACTGAGTAAACTCAGCATAAATAGGCAAGTAACAA  600

seq1  ACTCATGGAACCCACTAATTCAGACAGAATCCTGAACAGTGAAAGCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGGAACCCACTAATTCAGACAGAATCCTGAACAGTGAAAGCAACT  650

seq1  GACCCCTTCATGGCATAGTTCTTGGAAGGCTAGCAGCAAAACTCTATTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTTCATGGCATAGTTCTTGGAAGGCTAGCAGCAAAACTCTATTCT  700

seq1  ACTTATTATTGATTTACTCAAAAATTATTTGCTGAGCATAAACGATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTATTGATTTACTCAAAAATTATTTGCTGAGCATAAACGATATAT  750

seq1  CCTACAAGTTGGGAATGCAATGGTGCATAGTCCTTAACTTCTTACATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAGTTGGGAATGCAATGGTGCATAGTCCTTAACTTCTTACATATT  800

seq1  GGTCCTTAAAAGGCAGTTCTCCATTCTGCTTTTCATCCCTCCAAGGATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTAAAAGGCAGTTCTCCATTCTGCTTTTCATCCCTCCAAGGATCC  850

seq1  TGTACTTACATTACTGGCCAGGCTCTTTCCCACTCAACTAGATTAAATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTACATTACTGGCCAGGCTCTTTCCCACTCAACTAGATTAAATGC  900

seq1  AGAGCCACATCACATACAGTGAAGAGCAGAACTCAGAGCCAGGTGCCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACATCACATACAGTGAAGAGCAGAACTCAGAGCCAGGTGCCCAA  950

seq1  TACCAAAAGTTGGCTCTGCTACGGACTAGTTATGTGCCCTTGGTCATGTC  1000
      ||||||||| ||||||||||||||||||| |||||| | |||||||||||
seq2  TACCAAAAG-TGGCTCTGCTACGGACTAG-TATGTGTCTTTGGTCATGTC  998

seq1  ATTCAATTCTTCCAAGATTCAGTTTGCTCATCCAGAAAACGGAAGATAAC  1050
      ||||||||||||  ||||||||||||||||| ||||||||||| ||||||
seq2  ATTCAATTCTTC--AGATTCAGTTTGCTCAT-CAGAAAACGGAGGATAAC  1045

seq1  ATAACCTAATTTTTTTCTACTAATTAAATAAATTAACATTTGTCAAGTAC  1100
      || | |||   ||||||| |||  |||||||| ||||||||||| |||||
seq2  AT-ATCTA--GTTTTTCTCCTA--TAAATAAA-TAACATTTGTC-AGTAC  1088

seq1  TGAGACTATCTAGCTTTTAGAATTTATTACATGAAAATTATTA-ACAACG  1149
      ||| |||||||||| ||||||  ||||| | || ||| ||||| ||| | 
seq2  TGAAACTATCTAGCCTTTAGA--TTATT-CCTG-AAAGTATTACACAGC-  1133

seq1  AGTTTTTGGCCACTGGAA  1167
           || ||||||||||
seq2  -----TTTGCCACTGGAA  1146

seq1: chr12_16914642_16914685
seq2: B6Ng01-060N19.g_783_826 (reverse)

seq1  AGCCTGGTCTACAGAGTGAGTTCTAGGACAGCCAGGTCTATACA  44
      ||||||||||||| ||||||||| |||||||||||| |||||||
seq2  AGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACA  44