BAC Information

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BAC

Clone NameB6Ng01-061G06
Chromosome12 (Build37)
Map Location 55,218,543 - 55,313,494
singlet/doubletdoublet
Overlap geneEgln3
Upstream geneAkap6, Npas3
Downstream geneEG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061G06.bB6Ng01-061G06.g
ACCDH882083DH882084
length1,0811,104
definitionDH882083|Mus musculus domesticus DNA, BAC clone: B6Ng01-061G06, 5' end.DH882084|Mus musculus domesticus DNA, BAC clone: B6Ng01-061G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,218,543 - 55,219,629)(55,312,381 - 55,313,494)
sequence
gaattcctaccaatccattggcatagccaggaaggatgcaaggacatttc
ctaccaatagatactattgaactggactactgttcagagatgtcactaga
ctgcaaatgatagatcagccaagactccagcttctaggagtgctccctta
acttgagaccctagatctgatcggtgaccctagaagtgtgggttcttgaa
tgaccttgtgcaaaaaggactatcagtgctgagtgatacatcttgtacct
gcaagagcaactgacaaaaagaactggaactcaggtcctatccaaacact
gcaagggaattgcctgtaatcccgtcccccttctaactcctacaggcagc
cagctgtgagggaagctggagtcttccctatgagggctgtaactatagcc
tagggaactggtcacaggggtatccagatatggttgtcccagcttgggca
actccagtgaggatgtagcaagctttcatggccatgatggagttggggtc
tatggagcctggcctctagtgtatggcctgcctttaacactactctgggt
gatcaactgagttctttttacctgggtttcttgaatatccctgcctggct
tagcctcccagctcctagcctcctttgtgaggtagggcctcttacagcca
gtttaaataaaccaaacattaaaagaaaagtctgtccccgtgatacagaa
cacaaggatgatcagtgaaagactggacaggagacccgtgaagcctatat
gctctagcactgaacaatgagactagactgaagaatgctgctgtcactac
agaggcaaccacaagcatccaggattgtgtagtcatcctcacgatgctca
agaagatggaagatgactgcaggatgcagtctcacagctggtcttatgag
gtgtgagtctttatgaaggtctgttgctcaggcttgttggataagtaagt
gtgtcagcttctctcaccatcgcctgtgtatctgggttattgaggttttc
attccttcttggtggctttgtcacccaaaagtcttcaggcccttcaagaa
caaagtctgctgaactcaggaatctgctctc
gaattctcagaagacattttgatgtgagggaacagaacacagagaaatag
tcataaagatgttggccaattagagaagctcgaaggagcaggtgtgataa
cctagggataaatataagtcattgtcacttctacagctggcagaaaatga
aaagtgtggagctatcaggaccgaggagtgcaggatctctgcccatatga
gaagccaccaacagaattggagctgccctgaacattatgtccctagaaat
gttaaaaagccacaggaccccactgctgccagtgtcacctacccttgcca
tgtctaaaagctctggacagtgtggggattgcttcctccttacatgcatt
ctcatccctggcagcaccaagtaccgctagctcgcaagggcctctgggaa
atgcaatttgcaggctttcaggccccaccaaagaagcagtgcagtcagga
agggcacttagtgcagagaagggccggcacaggaggatacagatttgttt
tcaagccgggcaaagaaaaacatacctttagttatatttttttttcttaa
aaaagtaatacaagcccattaggaaaaagaaagaaagcacaaacaactga
acatcaaaagctcacccaaggcccctacttccccagtatgtcttctctct
ccccttctctcgacctcatattctgttttgtaacccagtatactaaatgc
atgcaataaaccatctaacaggcgtttcctttgttctagatcccggaatt
gagtgttctgcattatcacatttctaactgtaaatattttttaaaaaagg
aattactggctaaaattaaactgcattaaaaaccaaaacaacaacaacac
aacaacaacaacaaaaaccagttcatgcagaatatagtgagaccatagac
ctctattggactaccattttgtatttacttagaaaataaatcatttttaa
atataaagaaagccaggtcgtggcctgctctgttcattttcctgcagcga
aatgttccagaacttctgggcaaaggtaagcagtgtgaagactgaagctt
ctgctaagccaatcctcattcttacatcaaccgtcctcacctgaagcctg
tctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_55218543_55219629
seq2: B6Ng01-061G06.b_44_1124

seq1  GAATTCCTACCAATCCATTGGCATAGCCAGGAAGGATGCAAGGACATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCAATCCATTGGCATAGCCAGGAAGGATGCAAGGACATTTC  50

seq1  CTACCAATAGATACTATTGAACTGGACTACTGTTCAGAGATGTCACTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAATAGATACTATTGAACTGGACTACTGTTCAGAGATGTCACTAGA  100

seq1  CTGCAAATGATAGATCAGCCAAGACTCCAGCTTCTAGGAGTGCTCCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATGATAGATCAGCCAAGACTCCAGCTTCTAGGAGTGCTCCCTTA  150

seq1  ACTTGAGACCCTAGATCTGATCGGTGACCCTAGAAGTGTGGGTTCTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGACCCTAGATCTGATCGGTGACCCTAGAAGTGTGGGTTCTTGAA  200

seq1  TGACCTTGTGCAAAAAGGACTATCAGTGCTGAGTGATACATCTTGTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTGTGCAAAAAGGACTATCAGTGCTGAGTGATACATCTTGTACCT  250

seq1  GCAAGAGCAACTGACAAAAAGAACTGGAACTCAGGTCCTATCCAAACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAGCAACTGACAAAAAGAACTGGAACTCAGGTCCTATCCAAACACT  300

seq1  GCAAGGGAATTGCCTGTAATCCCGTCCCCCTTCTAACTCCTACAGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGAATTGCCTGTAATCCCGTCCCCCTTCTAACTCCTACAGGCAGC  350

seq1  CAGCTGTGAGGGAAGCTGGAGTCTTCCCTATGAGGGCTGTAACTATAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGAGGGAAGCTGGAGTCTTCCCTATGAGGGCTGTAACTATAGCC  400

seq1  TAGGGAACTGGTCACAGGGGTATCCAGATATGGTTGTCCCAGCTTGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAACTGGTCACAGGGGTATCCAGATATGGTTGTCCCAGCTTGGGCA  450

seq1  ACTCCAGTGAGGATGTAGCAAGCTTTCATGGCCATGATGGAGTTGGGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGTGAGGATGTAGCAAGCTTTCATGGCCATGATGGAGTTGGGGTC  500

seq1  TATGGAGCCTGGCCTCTAGTGTATGGCCTGCCTTTAACACTACTCTGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGCCTGGCCTCTAGTGTATGGCCTGCCTTTAACACTACTCTGGGT  550

seq1  GATCAACTGAGTTCTTTTTACCTGGGTTTCTTGAATATCCCTGCCTGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACTGAGTTCTTTTTACCTGGGTTTCTTGAATATCCCTGCCTGGCT  600

seq1  TAGCCTCCCAGCTCCTAGCCTCCTTTGTGAGGTAGGGCCTCTTACAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCCCAGCTCCTAGCCTCCTTTGTGAGGTAGGGCCTCTTACAGCCA  650

seq1  GTTTAAATAAACCAAACATTAAAAGAAAAGTCTGTCCCCGTGATACAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATAAACCAAACATTAAAAGAAAAGTCTGTCCCCGTGATACAGAA  700

seq1  CACAAGGATGATCAGTGAAAGACTGGACAGGAGACCCGTGAAGCCTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGATGATCAGTGAAAGACTGGACAGGAGACCCGTGAAGCCTATAT  750

seq1  GCTCTAGCACTGAACAATGAGACTAGACTGAAGAATGCTGCTGTCACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGCACTGAACAATGAGACTAGACTGAAGAATGCTGCTGTCACTAC  800

seq1  AGAGGCAACCACAAGCATCCAGGATTGTGTAGTCATCCTCACGATGCTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAACCACAAGCATCCAGGATTGTGTAGTCATCCTCACGATGCTCA  850

seq1  AGAAGATGGAAGATGACTGCAGGATGCAGTCTCACAGCTGGTCTTTATGA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGAAGATGGAAGATGACTGCAGGATGCAGTCTCACAGCTGGTC-TTATGA  899

seq1  AGTGTGAGTCTTTATGAAGGTCTGTTTGCCCAGGCTTGTTGGATTAAGTA  950
       ||||||||||||||||||||||| |||| ||||||||||||| ||||||
seq2  GGTGTGAGTCTTTATGAAGGTCTG-TTGCTCAGGCTTGTTGGA-TAAGTA  947

seq1  AGTGTGTCAGCTTCTCTCACCACCGCCTGTGTTATCTTGGGTTATTGAGG  1000
      |||||||||||||||||||||| |||||||| |||| |||||||||||||
seq2  AGTGTGTCAGCTTCTCTCACCATCGCCTGTG-TATC-TGGGTTATTGAGG  995

seq1  TTTTCAATTCCTTCTTGTTGTCTTTGTCACCCAAAAGTC-TCAGGCCCTT  1049
      ||||| ||||||||||| || |||||||||||||||||| ||||||||||
seq2  TTTTC-ATTCCTTCTTGGTGGCTTTGTCACCCAAAAGTCTTCAGGCCCTT  1044

seq1  CAAGATCAGAGTCTGCTGACCCCAGGGACTCTGCTCTC  1087
      ||||| || |||||||||| | || ||| |||||||||
seq2  CAAGAACAAAGTCTGCTGAACTCA-GGAATCTGCTCTC  1081

seq1: chr12_55312381_55313494
seq2: B6Ng01-061G06.g_70_1173 (reverse)

seq1  CAGACAGGCATCAGGTGAGGACGGGTCTGATGTAAGAATGAGGATGGGCC  50
      ||||||||| ||||||||||||||   |||||||||||||||||| ||| 
seq2  CAGACAGGCTTCAGGTGAGGACGG--TTGATGTAAGAATGAGGATTGGCT  48

seq1  TAAGGCAGAGCCTCCAGTCTTCACACTGCTTACCTTTGCCCAGAAGTTCT  100
      ||  |||||  || ||||||||||||||||||||||||||||||||||||
seq2  TA--GCAGAAGCTTCAGTCTTCACACTGCTTACCTTTGCCCAGAAGTTCT  96

seq1  AGGAACATCTCGCTGCCAGGGAAAATGAACAGAGCAGGCCACGACCTGGC  150
       ||||||| |||||||   |||||||||||||||||||||||||||||||
seq2  -GGAACATTTCGCTGC--AGGAAAATGAACAGAGCAGGCCACGACCTGGC  143

seq1  TTTCTTGTATATTTAAAAATGATTTATTTTCTAAGTAAATACAAAATGGT  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTT-TATATTTAAAAATGATTTATTTTCTAAGTAAATACAAAATGGT  192

seq1  AGTCCAATAGAGGTCTATGGTCTCACTATATTCTGCATGAACTGGTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATAGAGGTCTATGGTCTCACTATATTCTGCATGAACTGGTTTTT  242

seq1  GTTGTTGTTGTTGTTGTTGTTGTTGTTTTGGTTTTTAATTGCAGTTTAAT  300
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  GTTGTTGTTGTTG-TGTTGTTGTTGTTTTGGTTTTTAA-TGCAGTTTAAT  290

seq1  TTTAGCCAGTAATTCCTTTTTTAAAAAATATTTACAGTTAGAAATGTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCAGTAATTCCTTTTTTAAAAAATATTTACAGTTAGAAATGTGAT  340

seq1  AATGCAGAACACTCAATTCCGGGATCTAGAACAAAGGAAACGCCTGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAACACTCAATTCCGGGATCTAGAACAAAGGAAACGCCTGTTAG  390

seq1  ATGGTTTATTGCATGCATTTAGTATACTGGGTTACAAAACAGAATATGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTATTGCATGCATTTAGTATACTGGGTTACAAAACAGAATATGAG  440

seq1  GTCGAGAGAAGGGGAGAGAGAAGACATACTGGGGAAGTAGGGGCCTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGAGAGAAGGGGAGAGAGAAGACATACTGGGGAAGTAGGGGCCTTGGG  490

seq1  TGAGCTTTTGATGTTCAGTTGTTTGTGCTTTCTTTCTTTTTCCTAATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTTGATGTTCAGTTGTTTGTGCTTTCTTTCTTTTTCCTAATGGG  540

seq1  CTTGTATTACTTTTTTAAGAAAAAAAAATATAACTAAAGGTATGTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTACTTTTTTAAGAAAAAAAAATATAACTAAAGGTATGTTTTTC  590

seq1  TTTGCCCGGCTTGAAAACAAATCTGTATCCTCCTGTGCCGGCCCTTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCGGCTTGAAAACAAATCTGTATCCTCCTGTGCCGGCCCTTCTCT  640

seq1  GCACTAAGTGCCCTTCCTGACTGCACTGCTTCTTTGGTGGGGCCTGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAGTGCCCTTCCTGACTGCACTGCTTCTTTGGTGGGGCCTGAAAG  690

seq1  CCTGCAAATTGCATTTCCCAGAGGCCCTTGCGAGCTAGCGGTACTTGGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAATTGCATTTCCCAGAGGCCCTTGCGAGCTAGCGGTACTTGGTG  740

seq1  CTGCCAGGGATGAGAATGCATGTAAGGAGGAAGCAATCCCCACACTGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGGGATGAGAATGCATGTAAGGAGGAAGCAATCCCCACACTGTCC  790

seq1  AGAGCTTTTAGACATGGCAAGGGTAGGTGACACTGGCAGCAGTGGGGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTTTAGACATGGCAAGGGTAGGTGACACTGGCAGCAGTGGGGTCC  840

seq1  TGTGGCTTTTTAACATTTCTAGGGACATAATGTTCAGGGCAGCTCCAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTTTTAACATTTCTAGGGACATAATGTTCAGGGCAGCTCCAATT  890

seq1  CTGTTGGTGGCTTCTCATATGGGCAGAGATCCTGCACTCCTCGGTCCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTGGCTTCTCATATGGGCAGAGATCCTGCACTCCTCGGTCCTGA  940

seq1  TAGCTCCACACTTTTCATTTTCTGCCAGCTGTAGAAGTGACAATGACTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCACACTTTTCATTTTCTGCCAGCTGTAGAAGTGACAATGACTTA  990

seq1  TATTTATCCCTAGGTTATCACACCTGCTCCTTCGAGCTTCTCTAATTGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATCCCTAGGTTATCACACCTGCTCCTTCGAGCTTCTCTAATTGGC  1040

seq1  CAACATCTTTATGACTATTTCTCTGTGTTCTGTTCCCTCACATCAAAATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCTTTATGACTATTTCTCTGTGTTCTGTTCCCTCACATCAAAATG  1090

seq1  TCTTCTGAGAATTC  1114
      ||||||||||||||
seq2  TCTTCTGAGAATTC  1104