BAC Information

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BAC

Clone NameB6Ng01-062A18
Chromosome12 (Build37)
Map Location 96,075,322 - 96,218,215
singlet/doubletdoublet
Overlap geneLOC217786
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC100039603, LOC667688, Flrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062A18.bB6Ng01-062A18.g
ACCDH882560DH882561
length1,0771,166
definitionDH882560|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A18, 5' end.DH882561|Mus musculus domesticus DNA, BAC clone: B6Ng01-062A18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,217,123 - 96,218,215)(96,075,322 - 96,076,505)
sequence
gaattcaaaggccacaggagtattgagtgttaaggtactattctctgtat
actttcttttttttttttttttttttttgttttttgagacagggtttctc
tgtatagccctggctgtcctggaactcactctgtagaccatgctggcctc
gatctcagaaatctacctgcctctgcctcccgactgatgggattaaaggc
atgtgccaccatgcccggctttctgtatattttttactggcctgtaaact
tacagtctctcccatggctagaatcaggcgtcaaagaagtctttctcaat
ttggaatgtgtaatagaggtttgagcacgtacatcttcagttcagtagcg
aatcacatggtgacactggttcacagagtggccataaaagcagtggcatc
tgttacggatggagaaaaatatattaattgggtaagtgcgctaagtattg
aaattctgtttttaactgagtaatggtccaggtttaagggccagcacctg
aacagcttgcagctacgagttaatttatactcctagatcacaacatagcc
gtgacccttagagaatcttagaaagaaagcctcatctttcaagaagactg
catataattttcttgtagactgttttgctatgacatatagaatttttttt
cttcttttcttgtcatttttatctgtgtctcttctctggataattcattc
ctaaagtataatcaacatagagaactgtatttagaaatatactggtaggt
acactgtttaggtataatggtgagagttaccataaattgtcttaaaattg
gaagagacatcattttaactcttagtatagcatgaacaaattaaattacc
cagaaccaatataaagaacaatagatgaaaaattactaagggcaaaatga
gtgataagagggattttgggctaccccaataaacattattctgccacaac
agtcaaatgaccaatcattcagtggatagtgaggtcagagagcttatcag
atgttcatgggtgtttggaaagaaagatttcactgtcttgtctgctagat
gctaaatgaatcctactgaaagtgaaa
gaattcccataggtttatcatattaaggagtcagcaaaggacggttagca
gaacaacaatgaacagtgatatattgtgattaacaaataaaggttgaaat
attgcctctgcattcttcattctcagtcttccactttccatcctgaaata
gttgttcttgtagattttatttggttccctgaaacaacttatgctttgcc
cttaggtaagcagagataagtgagaagaggcttgttggaatgttaatatg
cagttggattgatattcgcgttatgtatccatgagcacagtcattcagag
cctgatttattattacaggatatatttatgaggttagggtaataaaaaca
tcctaaaatttataaatattagtgtggtaagaccatattgataggatctg
tttcatgtgaaattgcagtattatttctttgatcatatttcttgaacata
ttttatgatttgaattaactttctcttgtcatattcttgtaacttcccaa
tatgaaagctatgaatcccataattgtgaacatgaatttaacgtctcttc
atatgcctatctagattttctgctattgcttttgtctatttgacaaaaga
atttctgaagttacatgtgtttgcaatctaaaacttacccttttgtaatc
tgagacagtataaatatgttcaaatatattcaagttagggaaagagaata
taactctaagaatgcttctgtatgaccaggaagcagcactacggaatgca
taatggccaggagggcagactgcaaagaaagcacatccatacagaaacat
ggataatttagtttattttgtttcatttttttttgtattgcattttgcct
gtggtctgcaaactcattttagataaaaactaaatctcttccaagctgtc
tctaaacttcaaataagtagctattttgtcttcactttaaagtgaacttc
attcaattttaaactatattacagattcaaaatgatcctcctatacagaa
tttgtgctttgagaatttgaaatgaattgtgtttatcatggctcaattat
catgaaatcaaacattcacgaaggttattcagggctaggatcactaccat
tataaatgttgtttccgatatataaaatgccattgtgcattacttttttt
cattttacccaccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_96217123_96218215
seq2: B6Ng01-062A18.b_49_1125 (reverse)

seq1  TTTCACTTTCCAGTAGGATTCTATTTTAGCAATCCTTAGCAGAACAAGAC  50
      ||||||||| |||||||||||   |||||| |||  |||||| |||||||
seq2  TTTCACTTT-CAGTAGGATTC--ATTTAGC-ATC--TAGCAG-ACAAGAC  43

seq1  AGTGAAATTCTTTCTCTCCAAACACCCATTGAACATCTGATAAGCTTCTC  100
      ||||||| ||||||| |||||||||||| |||||||||||||||| ||||
seq2  AGTGAAA-TCTTTCTTTCCAAACACCCA-TGAACATCTGATAAGC-TCTC  90

seq1  TGACCTCCACTATCCACTGAATGATTGGTCATTTTGACCTGTTGTTGGCA  150
      |||||| |||||||||||||||||||||||| ||||| |||||| |||| 
seq2  TGACCT-CACTATCCACTGAATGATTGGTCA-TTTGA-CTGTTG-TGGC-  135

seq1  AGAATAATGTTTATTTGGGGTAGCCCAAAATCCCTCTTATCACTCATTTT  200
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAATAATGTTTA-TTGGGGTAGCCCAAAATCCCTCTTATCACTCATTTT  184

seq1  GCCCTTAGTAATTTTTCATCTATTGTTCTTTATATTGGTTCTGGGTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTAGTAATTTTTCATCTATTGTTCTTTATATTGGTTCTGGGTAATT  234

seq1  TAATTTGTTCATGCTATACTAAGAGTTAAAATGATGTCTCTTCCAATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTTCATGCTATACTAAGAGTTAAAATGATGTCTCTTCCAATTTT  284

seq1  AAGACAATTTATGGTAACTCTCACCATTATACCTAAACAGTGTACCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATTTATGGTAACTCTCACCATTATACCTAAACAGTGTACCTACC  334

seq1  AGTATATTTCTAAATACAGTTCTCTATGTTGATTATACTTTAGGAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATATTTCTAAATACAGTTCTCTATGTTGATTATACTTTAGGAATGAA  384

seq1  TTATCCAGAGAAGAGACACAGATAAAAATGACAAGAAAAGAAGAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAGAGAAGAGACACAGATAAAAATGACAAGAAAAGAAGAAAAAAA  434

seq1  ATTCTATATGTCATAGCAAAACAGTCTACAAGAAAATTATATGCAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATATGTCATAGCAAAACAGTCTACAAGAAAATTATATGCAGTCTT  484

seq1  CTTGAAAGATGAGGCTTTCTTTCTAAGATTCTCTAAGGGTCACGGCTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGATGAGGCTTTCTTTCTAAGATTCTCTAAGGGTCACGGCTATG  534

seq1  TTGTGATCTAGGAGTATAAATTAACTCGTAGCTGCAAGCTGTTCAGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATCTAGGAGTATAAATTAACTCGTAGCTGCAAGCTGTTCAGGTGC  584

seq1  TGGCCCTTAAACCTGGACCATTACTCAGTTAAAAACAGAATTTCAATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTTAAACCTGGACCATTACTCAGTTAAAAACAGAATTTCAATACT  634

seq1  TAGCGCACTTACCCAATTAATATATTTTTCTCCATCCGTAACAGATGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGCACTTACCCAATTAATATATTTTTCTCCATCCGTAACAGATGCCA  684

seq1  CTGCTTTTATGGCCACTCTGTGAACCAGTGTCACCATGTGATTCGCTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTTATGGCCACTCTGTGAACCAGTGTCACCATGTGATTCGCTACT  734

seq1  GAACTGAAGATGTACGTGCTCAAACCTCTATTACACATTCCAAATTGAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAAGATGTACGTGCTCAAACCTCTATTACACATTCCAAATTGAGA  784

seq1  AAGACTTCTTTGACGCCTGATTCTAGCCATGGGAGAGACTGTAAGTTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTTCTTTGACGCCTGATTCTAGCCATGGGAGAGACTGTAAGTTTAC  834

seq1  AGGCCAGTAAAAAATATACAGAAAGCCGGGCATGGTGGCACATGCCTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTAAAAAATATACAGAAAGCCGGGCATGGTGGCACATGCCTTTA  884

seq1  ATCCCATCAGTCGGGAGGCAGAGGCAGGTAGATTTCTGAGATCGAGGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATCAGTCGGGAGGCAGAGGCAGGTAGATTTCTGAGATCGAGGCCA  934

seq1  GCATGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  984

seq1  CCTGTCTCAAAAAACAAAAAAAAAAAAAAAAAAAAAAGAAAGTATACAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTCAAAAAACAAAAAAAAAAAAAAAAAAAAAAGAAAGTATACAGA  1034

seq1  GAATAGTACCTTAACACTCAATACTCCTGTGGCCTTTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTACCTTAACACTCAATACTCCTGTGGCCTTTGAATTC  1077

seq1: chr12_96075322_96076505
seq2: B6Ng01-062A18.g_66_1231

seq1  GAATTCCCATAGGTTTATCATATTAAGGAGTCAGCAAAGGACGGTTAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATAGGTTTATCATATTAAGGAGTCAGCAAAGGACGGTTAGCA  50

seq1  GAACAACAATGAACAGTGATATATTGTGATTAACAAATAAAGGTTGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAATGAACAGTGATATATTGTGATTAACAAATAAAGGTTGAAAT  100

seq1  ATTGCCTCTGCATTCTTCATTCTCAGTCTTCCACTTTCCATCCTGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTCTGCATTCTTCATTCTCAGTCTTCCACTTTCCATCCTGAAATA  150

seq1  GTTGTTCTTGTAGATTTTATTTGGTTCCCTGAAACAACTTATGCTTTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTTGTAGATTTTATTTGGTTCCCTGAAACAACTTATGCTTTGCC  200

seq1  CTTAGGTAAGCAGAGATAAGTGAGAAGAGGCTTGTTGGAATGTTAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTAAGCAGAGATAAGTGAGAAGAGGCTTGTTGGAATGTTAATATG  250

seq1  CAGTTGGATTGATATTCGCGTTATGTATCCATGAGCACAGTCATTCAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGATTGATATTCGCGTTATGTATCCATGAGCACAGTCATTCAGAG  300

seq1  CCTGATTTATTATTACAGGATATATTTATGAGGTTAGGGTAATAAAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTTATTATTACAGGATATATTTATGAGGTTAGGGTAATAAAAACA  350

seq1  TCCTAAAATTTATAAATATTAGTGTGGTAAGACCATATTGATAGGATCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAATTTATAAATATTAGTGTGGTAAGACCATATTGATAGGATCTG  400

seq1  TTTCATGTGAAATTGCAGTATTATTTCTTTGATCATATTTCTTGAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTGAAATTGCAGTATTATTTCTTTGATCATATTTCTTGAACATA  450

seq1  TTTTATGATTTGAATTAACTTTCTCTTGTCATATTCTTGTAACTTCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGATTTGAATTAACTTTCTCTTGTCATATTCTTGTAACTTCCCAA  500

seq1  TATGAAAGCTATGAATCCCATAATTGTGAACATGAATTTAACGTCTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAAGCTATGAATCCCATAATTGTGAACATGAATTTAACGTCTCTTC  550

seq1  ATATGCCTATCTAGATTTTCTGCTATTGCTTTTGTCTATTTGACAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCTATCTAGATTTTCTGCTATTGCTTTTGTCTATTTGACAAAAGA  600

seq1  ATTTCTGAAGTTACATGTGTTTGCAATCTAAAACTTACCCTTTTGTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAAGTTACATGTGTTTGCAATCTAAAACTTACCCTTTTGTAATC  650

seq1  TGAGACAGTATAAATATGTTCAAATATATTCAAGTTAGGGAAAGAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAGTATAAATATGTTCAAATATATTCAAGTTAGGGAAAGAGAATA  700

seq1  TAACTCTAAGAATGCTTCTGTATGACCAGGAAGCAGCACTACGGAATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTAAGAATGCTTCTGTATGACCAGGAAGCAGCACTACGGAATGCA  750

seq1  TAATGGCCAGGAGGGCAGACTGCAAAGAAAGCACATCCATACAGAAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCCAGGAGGGCAGACTGCAAAGAAAGCACATCCATACAGAAACAT  800

seq1  GGATAATTTAGTTTATTTTGTTTCATTTTTTTTTGTATTGCATTTTGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATTTAGTTTATTTTGTTTCATTTTTTTTTGTATTGCATTTTGCCT  850

seq1  GTGGTCTGCAAACTCATTTTAGATAAAAAACTAAATCTCTTCCAAGCTGT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTGGTCTGCAAACTCATTTTAGAT-AAAAACTAAATCTCTTCCAAGCTGT  899

seq1  CTCTAAAACTTCAAATAAGTAGCTATTTTTGTCTTCACTTTAAAGTGAAC  950
      |||| |||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTCT-AAACTTCAAATAAGTAGCTA-TTTTGTCTTCACTTTAAAGTGAAC  947

seq1  TTCATTCAATTTTAAACTATATTACAGATTCAAAAATGATCCTCCTATAC  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTCATTCAATTTTAAACTATATTACAGATTC-AAAATGATCCTCCTATAC  996

seq1  AGAATTTGTGCCTTTGAG-ATTTGAAATGAATTGTGTTTATCATGGCTCA  1049
      |||||||||| ||||||| |||||||||||||||||||||||||||||||
seq2  AGAATTTGTG-CTTTGAGAATTTGAAATGAATTGTGTTTATCATGGCTCA  1045

seq1  ATTATCATGATATCAAACAATCAACGAAGGTTATTCAGGCCTAGGATACA  1099
      |||||||||| |||||||| || |||||||||||||||| |||||||   
seq2  ATTATCATGAAATCAAACATTC-ACGAAGGTTATTCAGGGCTAGGAT--C  1092

seq1  ACTAACAATTCATAAATGTTGTTTACAGTATAATTAGAAATGGCATATGT  1149
      |||| ||  | ||||||||||||| |  ||||  || ||||| ||| |||
seq2  ACTACCA--TTATAAATGTTGTTTCCGATATA--TA-AAATGCCAT-TGT  1136

seq1  CCATTCACTTTTTTTTTCATTTTTACCCAACCATA  1184
       |||| ||  ||||||||| |||||||| ||||||
seq2  GCATT-AC--TTTTTTTCA-TTTTACCC-ACCATA  1166