BAC Information

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BAC

Clone NameB6Ng01-062B02
Chromosome12 (Build37)
Map Location 16,545,518 - 16,679,732
singlet/doubletdoublet
Overlap geneLpin1, Ntsr2, Greb1
Upstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
Downstream geneE2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062B02.bB6Ng01-062B02.g
ACCDH882576DH882577
length1,1561,065
definitionDH882576|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B02, 5' end.DH882577|Mus musculus domesticus DNA, BAC clone: B6Ng01-062B02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,678,551 - 16,679,732)(16,545,518 - 16,546,583)
sequence
gaattcctatggctggggatgtggcacaggagggagctgcccaaggccca
catgattgggaaacagggttgaactgagatagacagtagcatgagagccc
agggctagagctgagtgagggtgcttgatttgggatcaaggccccatctc
ccctccccttctttccgtcggctccattctcctgttctgctcccatcctg
tcttcccagcaatcctgcctaccatccatgttactgaggttatgagtcgc
cctgaaaggagcagaggccgctgggcacctggcactcccagccagctgtt
tggttatggtgagtggggtccccacgtggctcttgggagaactcacccct
ttctctccttgcctctgtccttgccctctcaaggagccaccttgtgtgtg
atctgccaagaccggaactcacttcgccagacggtggtccgcctggagct
agaagatgagtggcagttccggctgcgggatgagttccagacagccaatg
ccaaggaagacaggccgctctttttcctcaccgcacggcacatctgagag
atggaccctggcagagctcctgagagtgtgaggtcatcagaacccacctg
ccactgaggccagtgaaggtctcagaccaaggggtacaagaactccagca
cacccagagatggtcatgcacagcctcttgagacgcatgtcacaatgtcc
tatgacagagaatgacttagagccacaggcatgagtccttgataggcagg
actgaaaaaccaaagagcacatgcactgagctatcttgaagtccgttata
tgcagaatgaagttttgccaagtctgctggcattcacacgcttccatgga
caaacttgacttgctctagggaaccttgggttatcatgtcacgatgcctg
tgaccatgatttcacgaagtaggttcctctggcttcctacagagcaatat
ttccaaggaacattttaactgtaaaggctagagacagaagacaaagagta
gatcatttaatagattattatcccatacagtttctttgcaggagctagct
aaggcatcaaattaatatgataaatgattgctatacttagaatcagtgac
cctattaaatagtagggggtagtacttacctctataaagccaaatgaaaa
gagttt
gaattccctggaagtgagcaggggagacagggtatgccaagcctggcatc
gtgaagaacagacagcctgcgcagaggtacaagggacggacagcacagtc
aggggcatctgcctgccacagaggccatgtgcaggccacgggggaggaac
cgaagacaagtcacagctctgaaggagcaggacaactacagtcacagtga
acaggtacagggtcttgttcttatcacagtgcagatctgacatcaatcct
gccttgttccagctgtgtgatctcaggcagagagaggcccagatgtctcc
ataccctgacttcctccaccgtgaaggaaggaaaatgaaccgtgccactt
gcttagcatcagaaacagaataacatacccagtgattcagctgtaggtac
tgaagacccatcactccacagtggatcacttccacttcaggaaagaatcc
tggtcagcaagcctgaggcctcctctagccttacttgctgtgtgactctg
ggaaagtatcttgccctccctgagcttcaacccctccatccgcacggtgt
gtggggctggaccacgcaggggtttccagcactccctactcagggcatct
cccctgcctcccggaggatgttgcctggccatagcctgcactgcagaagg
aaagcagctacatccatcagcctgggagacctccaggctcctccacagtg
attcacacacacccagccctctcctgcacacccagacttcaatctgacgg
gtctctgggcccctcttcactcatgccgagaaccaaaggggggctttcga
aatccaaactttcaggaatagcatgttctgtggcatgaaatgacttattc
actaaggctgtgtgtgtttaataaagtctccgagagactcgtgagaaaca
gtgtgtctgtacaaggcagggaagcctcccttaataacaccaccagggat
tatgtcttcctagagaataaaaaaacaaatttttaaaatacctctgactt
aaagtttgtgggcttaggaggtgggccagctccccaaggggactgtccct
ggcaggcagtggaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_16678551_16679732
seq2: B6Ng01-062B02.b_50_1205 (reverse)

seq1  AAACTTCTTTTCCATTTTGCCCTTTATAAGAGGTAGGGTACTTACCCCAT  50
      |||| |||||| ||||| |  |||||| |||||||  |||| |||||| |
seq2  AAAC-TCTTTT-CATTTGG--CTTTAT-AGAGGTA-AGTAC-TACCCCCT  43

seq1  ACTATTTTAATAGAGTCACATTGTTTCTAAGGTATAGCAATTCATTTTAT  100
      |||| |||||||| |||||  || |||||| ||||||||| ||| |||||
seq2  ACTA-TTTAATAGGGTCAC--TGATTCTAA-GTATAGCAA-TCA-TTTAT  87

seq1  CATATTAAATTTGATGCCTTTGGGCTAGCTCCTGCAAAGAAAACTTGTAT  150
      |||||| |||||||||||||   |||||||||||||||||||   |||||
seq2  CATATT-AATTTGATGCCTT--AGCTAGCTCCTGCAAAGAAA--CTGTAT  132

seq1  GGGATTAAATAATTCTTATTAAAATGATCTACTCTTTTGTCTTCTTGTCT  200
      |||||  ||||||   |||| ||||||||||||| ||||||||| |||||
seq2  GGGAT--AATAAT--CTATT-AAATGATCTACTC-TTTGTCTTC-TGTCT  175

seq1  CTAGCCTTTACAGTTAAAATGTTCCTTTGGAATATTGCTCTGTAGGGAGC  250
      ||||||||||||||||||||||||||| | |||||||||||||||| |||
seq2  CTAGCCTTTACAGTTAAAATGTTCCTTGGAAATATTGCTCTGTAGGAAGC  225

seq1  CAGAGGAAACCTACTTCGTGAAATCATGGTCACAGGCATCGTGACATGAT  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGG-AACCTACTTCGTGAAATCATGGTCACAGGCATCGTGACATGAT  274

seq1  AACCCAAGGTTCCCTAGAGCAAGTCAAGTTTGTCCATGGAAGCGTGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAGGTTCCCTAGAGCAAGTCAAGTTTGTCCATGGAAGCGTGTGAA  324

seq1  TGCCAGCAGACTTGGCAAAACTTCATTCTGCATATAACGGACTTCAAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAGACTTGGCAAAACTTCATTCTGCATATAACGGACTTCAAGAT  374

seq1  AGCTCAGTGCATGTGCTCTTTGGTTTTTCAGTCCTGCCTATCAAGGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTGCATGTGCTCTTTGGTTTTTCAGTCCTGCCTATCAAGGACTC  424

seq1  ATGCCTGTGGCTCTAAGTCATTCTCTGTCATAGGACATTGTGACATGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGTGGCTCTAAGTCATTCTCTGTCATAGGACATTGTGACATGCGT  474

seq1  CTCAAGAGGCTGTGCATGACCATCTCTGGGTGTGCTGGAGTTCTTGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAGGCTGTGCATGACCATCTCTGGGTGTGCTGGAGTTCTTGTACC  524

seq1  CCTTGGTCTGAGACCTTCACTGGCCTCAGTGGCAGGTGGGTTCTGATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTCTGAGACCTTCACTGGCCTCAGTGGCAGGTGGGTTCTGATGAC  574

seq1  CTCACACTCTCAGGAGCTCTGCCAGGGTCCATCTCTCAGATGTGCCGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACTCTCAGGAGCTCTGCCAGGGTCCATCTCTCAGATGTGCCGTGC  624

seq1  GGTGAGGAAAAAGAGCGGCCTGTCTTCCTTGGCATTGGCTGTCTGGAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGAAAAAGAGCGGCCTGTCTTCCTTGGCATTGGCTGTCTGGAACT  674

seq1  CATCCCGCAGCCGGAACTGCCACTCATCTTCTAGCTCCAGGCGGACCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCGCAGCCGGAACTGCCACTCATCTTCTAGCTCCAGGCGGACCACC  724

seq1  GTCTGGCGAAGTGAGTTCCGGTCTTGGCAGATCACACACAAGGTGGCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGCGAAGTGAGTTCCGGTCTTGGCAGATCACACACAAGGTGGCTCC  774

seq1  TTGAGAGGGCAAGGACAGAGGCAAGGAGAGAAAGGGGTGAGTTCTCCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGGCAAGGACAGAGGCAAGGAGAGAAAGGGGTGAGTTCTCCCAA  824

seq1  GAGCCACGTGGGGACCCCACTCACCATAACCAAACAGCTGGCTGGGAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACGTGGGGACCCCACTCACCATAACCAAACAGCTGGCTGGGAGTG  874

seq1  CCAGGTGCCCAGCGGCCTCTGCTCCTTTCAGGGCGACTCATAACCTCAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGCCCAGCGGCCTCTGCTCCTTTCAGGGCGACTCATAACCTCAGT  924

seq1  AACATGGATGGTAGGCAGGATTGCTGGGAAGACAGGATGGGAGCAGAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGATGGTAGGCAGGATTGCTGGGAAGACAGGATGGGAGCAGAACA  974

seq1  GGAGAATGGAGCCGACGGAAAGAAGGGGAGGGGAGATGGGGCCTTGATCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGGAGCCGACGGAAAGAAGGGGAGGGGAGATGGGGCCTTGATCC  1024

seq1  CAAATCAAGCACCCTCACTCAGCTCTAGCCCTGGGCTCTCATGCTACTGT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCAAGCACCCTCACTCAGCTCTAGCCCTGGGCTCTCATGCTACTGT  1074

seq1  CTATCTCAGTTCAACCCTGTTTCCCAATCATGTGGGCCTTGGGCAGCTCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCAGTTCAACCCTGTTTCCCAATCATGTGGGCCTTGGGCAGCTCC  1124

seq1  CTCCTGTGCCACATCCCCAGCCATAGGAATTC  1182
      ||||||||||||||||||||||||||||||||
seq2  CTCCTGTGCCACATCCCCAGCCATAGGAATTC  1156

seq1: chr12_16545518_16546583
seq2: B6Ng01-062B02.g_68_1132

seq1  GAATTCCCTGGAAGTGAGCAGGGGAGACAGGGTATGCCAAGCCTGGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGGAAGTGAGCAGGGGAGACAGGGTATGCCAAGCCTGGCATC  50

seq1  GTGAAGAACAGACAGCCTGCGCAGAGGTACAAGGGACGGACAGCACAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAACAGACAGCCTGCGCAGAGGTACAAGGGACGGACAGCACAGTC  100

seq1  AGGGGCATCTGCCTGCCACAGAGGCCATGTGCAGGCCACGGGGGAGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCATCTGCCTGCCACAGAGGCCATGTGCAGGCCACGGGGGAGGAAC  150

seq1  CGAAGACAAGTCACAGCTCTGAAGGAGCAGGACAACTACAGTCACAGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGACAAGTCACAGCTCTGAAGGAGCAGGACAACTACAGTCACAGTGA  200

seq1  ACAGGTACAGGGTCTTGTTCTTATCACAGTGCAGATCTGACATCAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTACAGGGTCTTGTTCTTATCACAGTGCAGATCTGACATCAATCCT  250

seq1  GCCTTGTTCCAGCTGTGTGATCTCAGGCAGAGAGAGGCCCAGATGTCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTCCAGCTGTGTGATCTCAGGCAGAGAGAGGCCCAGATGTCTCC  300

seq1  ATACCCTGACTTCCTCCACCGTGAAGGAAGGAAAATGAACCGTGCCACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCTGACTTCCTCCACCGTGAAGGAAGGAAAATGAACCGTGCCACTT  350

seq1  GCTTAGCATCAGAAACAGAATAACATACCCAGTGATTCAGCTGTAGGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCATCAGAAACAGAATAACATACCCAGTGATTCAGCTGTAGGTAC  400

seq1  TGAAGACCCATCACTCCACAGTGGATCACTTCCACTTCAGGAAAGAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACCCATCACTCCACAGTGGATCACTTCCACTTCAGGAAAGAATCC  450

seq1  TGGTCAGCAAGCCTGAGGCCTCCTCTAGCCTTACTTGCTGTGTGACTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGCAAGCCTGAGGCCTCCTCTAGCCTTACTTGCTGTGTGACTCTG  500

seq1  GGAAAGTATCTTGCCCTCCCTGAGCTTCAACCCCTCCATCCGCACGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTATCTTGCCCTCCCTGAGCTTCAACCCCTCCATCCGCACGGTGT  550

seq1  GTGGGGCTGGACCACGCAGGGGTTTCCAGCACTCCCTACTCAGGGCATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTGGACCACGCAGGGGTTTCCAGCACTCCCTACTCAGGGCATCT  600

seq1  CCCCTGCCTCCCGGAGGATGTTGCCTGGCCATAGCCTGCACTGCAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCTCCCGGAGGATGTTGCCTGGCCATAGCCTGCACTGCAGAAGG  650

seq1  AAAGCAGCTACATCCATCAGCCTGGGAGACCTCCAGGCTCCTCCACAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTACATCCATCAGCCTGGGAGACCTCCAGGCTCCTCCACAGTG  700

seq1  ATTCACACACACCCAGCCCTCTCCTGCACACCCAGACTTCAATCTGAC-G  749
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATTCACACACACCCAGCCCTCTCCTGCACACCCAGACTTCAATCTGACGG  750

seq1  GTCTCTGGGCCCCTCTTCACTCATGCCGAGAACCAAAGGGGGGCTTTCGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGGGCCCCTCTTCACTCATGCCGAGAACCAAAGGGGGGCTTTCGA  800

seq1  AATCCAAAC-TTCAGGAATTAGCATGTTCTGTGGCATGAAATGACTTATT  848
      ||||||||| |||||||| |||||||||||||||||||||||||||||||
seq2  AATCCAAACTTTCAGGAA-TAGCATGTTCTGTGGCATGAAATGACTTATT  849

seq1  CACTAAGGCTGTGTGTGTTTAATAAAGTCTCCGAGAGACTCGTGAGAAAC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGCTGTGTGTGTTTAATAAAGTCTCCGAGAGACTCGTGAGAAAC  899

seq1  AGTGTGTCTGTACAAGGCAGGGAAGCCTCCCTTAATAACA-CACCAAGGA  947
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  AGTGTGTCTGTACAAGGCAGGGAAGCCTCCCTTAATAACACCACCAGGGA  949

seq1  TTATGTCTTTCCTAGAGATTAAAACAAACAAATTTTTAAAATACCTCCTG  997
      ||||||| |||||||||| ||||| ||||||||||||||||||||| |||
seq2  TTATGTC-TTCCTAGAGAATAAAA-AAACAAATTTTTAAAATACCT-CTG  996

seq1  ACCTAAAGTTTGT-GGCTAAGGAGGTGGG-CAGCTCCCCACAGGGAGCTG  1045
      || |||||||||| |||| |||||||||| |||||||||| ||||  |||
seq2  ACTTAAAGTTTGTGGGCTTAGGAGGTGGGCCAGCTCCCCA-AGGGGACTG  1045

seq1  TCCCCTGCCAGGCAGTGGAAG  1066
      | ||||| |||||||||||||
seq2  T-CCCTGGCAGGCAGTGGAAG  1065