BAC Information

Click to search

BAC

Clone NameB6Ng01-062O22
Chromosome12 (Build37)
Map Location 58,619,614 - 58,746,662
singlet/doubletdoublet
Overlap geneLOC100040044, Foxa1, 4921506M07Rik, EG217600
Upstream geneTitf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneBC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062O22.bB6Ng01-062O22.g
ACCDH883177DH883178
length1,1251,111
definitionDH883177|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O22, 5' end.DH883178|Mus musculus domesticus DNA, BAC clone: B6Ng01-062O22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,619,614 - 58,620,741)(58,745,540 - 58,746,662)
sequence
gaattcaaattaaaataaggagaaaagaatgtggttctagccaatggttc
ctacttttaaactagcaaggaactaactcacttatgtctggtgagagaac
attaagaagaaacctgagaggaattgtaatgttggttacttaccagtcag
gcagacagcacttcactttcatccactcacgccatcttagtcccctgtgt
aacaaaacttacgagtttctttagcttttcctcctttttaaaaaagaaaa
atgtcaacaatactgctgaatgttctccacactgaagaaaaaaaaaactg
aaaatatttagtacatacctgtttttcaatatgcttaccacaggcttaga
aaagtttaattctcaccatttctaaccaacaagccaaccaaacaagcaaa
actcactgtccgtattccccagaaagaggatttggaatcccatgcttgag
ccaaaccacaaaaaccagccactgcctgaccctgcgtttgatgctgaccc
cagtcaaatggggcatcaaaactataacaactgtaagagttggttccaga
atgaaaagcctgatttggtccctccagcctgctgccctggctttgggcct
gactggtttggctggcaggctaagaggcccatcattaccccaattgctct
gctgcctgctgggtggcagccatcactgcagggttcatgataaagactcc
aaagctctgctaccaccatggttatttcctaggccagcccttccacttct
agtgataccaaaccatctcggactctcaaacccacctggatgaccaccaa
accttccacttccctttaaccgcctattgctcttctgcttgggttcagca
ttgcatatgcgcacagtgatttctttagtgaccagatcctctccacaaac
agactggacagccttggcatttgtaaacgcagcaaaatcaaagggcctga
agaagtttagaaagaagggaatctacaacgttctcacgatgacagaagaa
ctgttgaagctctttggtcatgatgtcctccatataatgcccaataaaca
cctttctgcttctcaaattctcttcttcggcttgcctagaatcagaagat
tacagtccaccaatgctgctgtcaa
gaattcaaggcccatacctaaacatactaaaagcaacttattgcaaacca
acagccaatatcaaattaaatggaaagatacttgaagcaatcccactgaa
atcaggcaaaagacaaggatgcccactctcctcatatctattcaatatag
tacttgaagtgtttttctatatttattttctttttttgaaacatattctt
attattatgttatatgtatatggagaggggtatatgcacatgagtacagg
tgcccaaagagaccagaagacataaaacaggaggtagtttaaacttccca
acatgggtgctggggactgaacttaggtcttgtgcaagagcaatacaggc
tctaaaccactaagttatctctctagctcatgcccttttctatttagggt
gagatttcacctaacttctgaaatctggatatttttataccttatgtcat
caaggccataccttatttaaaccttctggttagctgatgctccactatag
gagtagctcattggatgggatgggaattcccatgtggtttcaactgacaa
cataaacagagaatctacttgctactccactaggatggatgactctagct
ttcttcactgttttttactgtggcaaaatggatgaaaaaagcaacttctc
agctttgaaaataataagattgaaaaattatctttttggctcttggtttt
cagagaattcgacccacaccagactacctctaccactgtggccaggagct
ggcacaacaaagctactgactcatggaagccaggaagcagagaggctgaa
aaagggagaagccagagatgaggcaatgccctttaaagatgcatcctgtt
tccctgctcctttcttcccagtccatgttcttcacagagtctgccacgtg
cccccatacattagtaagaccctgtgtccgtggatagatcagagcactca
caacccaatcattttctcaaagctccacacttcaactttgcattgaaatc
aagtcgtcaaaccataggctttcagcaaacatttttattcaacatatact
gcctctactcagcccacctttccaaacatctgaaagaccctgcatgtttt
gagacagtctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58619614_58620741
seq2: B6Ng01-062O22.b_46_1170

seq1  GAATTCAAATTAAAATAAGGAGAAAAGAATGTGGTTCTAGCCAATGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTAAAATAAGGAGAAAAGAATGTGGTTCTAGCCAATGGTTC  50

seq1  CTACTTTTAAACTAGCAAGGAACTAACTCACTTATGTCTGGTGAGAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTAAACTAGCAAGGAACTAACTCACTTATGTCTGGTGAGAGAAC  100

seq1  ATTAAGAAGAAACCTGAGAGGAATTGTAATGTTGGTTACTTACCAGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAGAAACCTGAGAGGAATTGTAATGTTGGTTACTTACCAGTCAG  150

seq1  GCAGACAGCACTTCACTTTCATCCACTCACGCCATCTTAGTCCCCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGCACTTCACTTTCATCCACTCACGCCATCTTAGTCCCCTGTGT  200

seq1  AACAAAACTTACGAGTTTCTTTAGCTTTTCCTCCTTTTTAAAAAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACTTACGAGTTTCTTTAGCTTTTCCTCCTTTTTAAAAAAGAAAA  250

seq1  ATGTCAACAATACTGCTGAATGTTCTCCACACTGAAGAAAAAAAAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAACAATACTGCTGAATGTTCTCCACACTGAAGAAAAAAAAAACTG  300

seq1  AAAATATTTAGTACATACCTGTTTTTCAATATGCTTACCACAGGCTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTTAGTACATACCTGTTTTTCAATATGCTTACCACAGGCTTAGA  350

seq1  AAAGTTTAATTCTCACCATTTCTAACCAACAAGCCAACCAAACAAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAATTCTCACCATTTCTAACCAACAAGCCAACCAAACAAGCAAA  400

seq1  ACTCACTGTCCGTATTCCCCAGAAAGAGGATTTGGAATCCCATGCTTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTGTCCGTATTCCCCAGAAAGAGGATTTGGAATCCCATGCTTGAG  450

seq1  CCAAACCACAAAAACCAGCCACTGCCTGACCCTGCGTTTGATGCTGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCACAAAAACCAGCCACTGCCTGACCCTGCGTTTGATGCTGACCC  500

seq1  CAGTCAAATGGGGCATCAAAACTATAACAACTGTAAGAGTTGGTTCCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAATGGGGCATCAAAACTATAACAACTGTAAGAGTTGGTTCCAGA  550

seq1  ATGAAAAGCCTGATTTGGTCCCTCCAGCCTGCTGCCCTGGCTTTGGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAGCCTGATTTGGTCCCTCCAGCCTGCTGCCCTGGCTTTGGGCCT  600

seq1  GACTGGTTTGGCTGGCAGGCTAAGAGGCCCATCATTACCCCAATTGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGTTTGGCTGGCAGGCTAAGAGGCCCATCATTACCCCAATTGCTCT  650

seq1  GCTGCCTGCTGGGTGGCAGCCATCACTGCAGGGTTCATGATAAAGACTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCTGCTGGGTGGCAGCCATCACTGCAGGGTTCATGATAAAGACTCC  700

seq1  AAAGCTCTGCTACCACCATGGTTATTTCCTAGGCCAGCCCTTCCACTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTGCTACCACCATGGTTATTTCCTAGGCCAGCCCTTCCACTTCT  750

seq1  AGTGATACCAAACCATCTCGGACTCTCAAACCCACCTGGATGACCACCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATACCAAACCATCTCGGACTCTCAAACCCACCTGGATGACCACCAA  800

seq1  ACCTTCCACTTCCCTTTAACCGCCTATTGCTCTTCTGCTTGGGTTCAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCACTTCCCTTTAACCGCCTATTGCTCTTCTGCTTGGGTTCAGCA  850

seq1  TTGCATATGCGCACAGTGATTTCTTTAGTGACCAGATCCTCTCCACAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATGCGCACAGTGATTTCTTTAGTGACCAGATCCTCTCCACAAAC  900

seq1  AGACTGGACAGCCTTGGCATTTGTAAACGCAGCAAAATCAAAGGGCCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGACAGCCTTGGCATTTGTAAACGCAGCAAAATCAAAGGGCCTGA  950

seq1  AG-AGTTTAGAAAGAAGGGAATCTACAACGTTCTCACGATGACAGAAGAA  999
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTTTAGAAAGAAGGGAATCTACAACGTTCTCACGATGACAGAAGAA  1000

seq1  CTGTTGAAGCTCTTTGGTCATGATGTCCTCCATATAATGCCCAATAAACA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAAGCTCTTTGGTCATGATGTCCTCCATATAATGCCCAATAAACA  1050

seq1  CCTTTCTGCTTCTCAAATTCTCTTC-TCGGCTTTGCTTAGAATCCAGAAG  1098
      ||||||||||||||||||||||||| ||||| |||| |||||| ||||||
seq2  CCTTTCTGCTTCTCAAATTCTCTTCTTCGGC-TTGCCTAGAAT-CAGAAG  1098

seq1  TTTACAGTCACACCATTGGCTGCCTGTCAA  1128
       |||||||| ||||| | |||| |||||||
seq2  ATTACAGTC-CACCAAT-GCTG-CTGTCAA  1125

seq1: chr12_58745540_58746662
seq2: B6Ng01-062O22.g_69_1179 (reverse)

seq1  CAGACTGTCTCAAAACATGCCAGGGTCCTTTTCAGATTGTTGTGAAGGTG  50
      ||||||||||||||||||| |||||||  ||||||||  |||  ||||||
seq2  CAGACTGTCTCAAAACATG-CAGGGTC--TTTCAGATGTTTGGAAAGGTG  47

seq1  GGCTGAGTATGGAGCAGTATTGTGGTTTGGATATAAAATGTTTGCTGAAG  100
      ||||||||| |  |||||| | ||  ||| ||| ||||||||||||||| 
seq2  GGCTGAGTA-GAGGCAGTA-TATG--TTGAATA-AAAATGTTTGCTGAAA  92

seq1  GCTTATGGTTTGACGACTTGATTTCCAATGCAAAGTTGAAGTGTGGGGCT  150
      || ||||||||||||||||||||| ||||||||||||||||||||| |||
seq2  GCCTATGGTTTGACGACTTGATTT-CAATGCAAAGTTGAAGTGTGGAGCT  141

seq1  TTGGGAAAATGATTGGGTTGTGAGTGCTCTGATCTAATCCACGGACACAG  200
      ||| ||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGAGAAAATGATTGGGTTGTGAGTGCTCTGATCT-ATCCACGGACACAG  190

seq1  GGTTCTACTTAAATGTATGGGTGGCACGTGGCAGACTCTGTGGAAGAACA  250
      |||  ||||  |||||||||| ||||||||||||||||||| ||||||||
seq2  GGTCTTACT--AATGTATGGG-GGCACGTGGCAGACTCTGT-GAAGAACA  236

seq1  TGGACTGGGAAGAAAGGAGCAGGGAAACAGGATGCATCTTTAAAGGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGGGAAGAAAGGAGCAGGGAAACAGGATGCATCTTTAAAGGGCAT  286

seq1  TG-CTCATCTCTGGCTTCTCCCTTTTTCAGCCTCTCTGCTTCCTGGCTTC  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATCTCTGGCTTCTCCCTTTTTCAGCCTCTCTGCTTCCTGGCTTC  336

seq1  CATGAGTCAGTAGCTTTGTTGTGCCAGCTCCTGGCCACAGTGGTAGAGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTCAGTAGCTTTGTTGTGCCAGCTCCTGGCCACAGTGGTAGAGGT  386

seq1  AGTCTGGTGTGGGTCGAATTCTCTG-AAACCAAGAGCCAAAAAGATAATT  448
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTCTGGTGTGGGTCGAATTCTCTGAAAACCAAGAGCCAAAAAGATAATT  436

seq1  TTTCAATCTTATTATTTTCAAAGCTGAGAAGTTGCTTTTTTCATCCATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCTTATTATTTTCAAAGCTGAGAAGTTGCTTTTTTCATCCATTT  486

seq1  TGCCACAGTAAAAAACAGTGAAGAAAGCTAGAGTCATCCATCCTAGTGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACAGTAAAAAACAGTGAAGAAAGCTAGAGTCATCCATCCTAGTGGA  536

seq1  GTAGCAAGTAGATTCTCTGTTTATGTTGTCAGTTGAAACCACATGGGAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAGTAGATTCTCTGTTTATGTTGTCAGTTGAAACCACATGGGAAT  586

seq1  TCCCATCCCATCCAATGAGCTACTCCTATAGTGGAGCATCAGCTAACCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCCCATCCAATGAGCTACTCCTATAGTGGAGCATCAGCTAACCAG  636

seq1  AAGGTTTAAATAAGGTATGGCCTTGATGACATAAGGTATAAAAATATCCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTAAATAAGGTATGGCCTTGATGACATAAGGTATAAAAATATCCA  686

seq1  GATTTCAGAAGTTAGGTGAAATCTCACCCTAAATAGAAAAGGGCATGAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGAAGTTAGGTGAAATCTCACCCTAAATAGAAAAGGGCATGAGC  736

seq1  TAGAGAGATAACTTAGTGGTTTAGAGCCTGTATTGCTCTTGCACAAGACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGATAACTTAGTGGTTTAGAGCCTGTATTGCTCTTGCACAAGACC  786

seq1  TAAGTTCAGTCCCCAGCACCCATGTTGGGAAGTTTAAACTACCTCCTGTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTCAGTCCCCAGCACCCATGTTGGGAAGTTTAAACTACCTCCTGTT  836

seq1  TTATGTCTTCTGGTCTCTTTGGGCACCTGTACTCATGTGCATATACCCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTCTTCTGGTCTCTTTGGGCACCTGTACTCATGTGCATATACCCCT  886

seq1  CTCCATATACATATAACATAATAATAAGAATATGTTTCAAAAAAAGAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATATACATATAACATAATAATAAGAATATGTTTCAAAAAAAGAAAA  936

seq1  TAAATATAGAAAAACACTTCAAGTACTATATTGAATAGATATGAGGAGAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATAGAAAAACACTTCAAGTACTATATTGAATAGATATGAGGAGAG  986

seq1  TGGGCATCCTTGTCTTTTGCCTGATTTCAGTGGGATTGCTTCAAGTATCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCCTTGTCTTTTGCCTGATTTCAGTGGGATTGCTTCAAGTATCT  1036

seq1  TTCCATTTAATTTGATATTGGCTGTTGGTTTGCAATAAGTTGCTTTTAGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTTAATTTGATATTGGCTGTTGGTTTGCAATAAGTTGCTTTTAGT  1086

seq1  ATGTTTAGGTATGGGCCTTGAATTC  1123
      |||||||||||||||||||||||||
seq2  ATGTTTAGGTATGGGCCTTGAATTC  1111