BAC Information

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BAC

Clone NameB6Ng01-063D07
Chromosome12 (Build37)
Map Location 93,429,265 - 93,533,791
singlet/doubletdoublet
Overlap geneLOC628116
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063D07.bB6Ng01-063D07.g
ACCDH883369DH883370
length1,1721,126
definitionDH883369|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D07, 5' end.DH883370|Mus musculus domesticus DNA, BAC clone: B6Ng01-063D07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,532,585 - 93,533,791)(93,429,265 - 93,430,416)
sequence
gaattcaggcatctgaaagaccttcagttttcacacttggataaagagat
cactcctggactcagttctctcatctgacaggcacagcaatacctgtagt
aaaagctatttcattaacattgagaacaaaaaaaggcaaaatacatggca
aactactacaactttaacgtgttagatttttagcagtattcttctcattc
ctcctaaactatgccagcatgtcccacggtcattttgatactgcttcaag
atctgaagtcatgaacaatgtgactctaagtcagctacatttcctaaatt
aaccacgttatgtaattagtatctcttgatgtatgtgtctgaggtatttt
tcccataattatctcttccttcctctcttcagcaacactaccacccacgt
agttttcaaattacagctttcatggccctagtttacacaactacttgagt
gtaccacctttttatgttttctctcttttatctagctaatcttcacagta
gatatgacacgcagtccatcacaagtatacatatatctgtggaaaagcaa
ctctgctcttcagtcacaaaggtccaactcagggcaaacagggagacaac
cacagtgacccttgctttgcaacacagtgaaagtgcctacttccctcctc
ctctccagttgctgactcaactgccctcattcaggaccttgtagatagtg
gaatgtaccaagcctccatggcctttgaactaaatgagggagagacacta
ggcatccaagccaacaccaaaaacaactctctagcaccgtggacattcag
ccccagggagtctgccattcttagaatgaatttcagttctaagtcatgag
ttgccagaaactcagaaatgaatatagcttgttctctctcctatgagtat
ttggactgggcaaatccatcaagggaaataaagcataaggaaaacagaaa
gatttttcttcatgtcaagaggttacatattattattattattattattt
attatttttacagtccagtcattatcccctccgatctacttcagacgttc
tcatcccattcttctctcctgtctcagatgtacccctcctacccacagac
cccccctctggctcagtctcctcaagtttagtgtgtctctgtctgagcaa
aacaggcagtcctgctgtatgg
gaattccagggttatcagtgcagaggagcaaggtaatgggaaggaactac
ctggatgaaagcatccaccttgaccttcagggaaggagtcacttggagcc
tgggtagaaacctaaaaacgcccatagggtttcaaatatataaagcaaac
attggccctggcatccctatagtgttcttccctataaaatgttaatacca
tcacagcaaacataccacatttcgtgtgtctgttaccttttccccctcta
caaatgaccaggaataatttgtcacggtgccaaaaaatcaagtcttcatg
cttgagaactgcaaaataattcagatggaaaagtgataatagatgataag
aacttttcattatatggaaacattttgactttttctaaaacaataaattc
aaatttgtagttttgtccatctagtatgtaaacttttaagaatgaatttt
ttcagcctccttgaggaagtggatgtgtcacagtgtggaaatccctattt
tcttcccaaaccactggactttaagtttactaagagaagcaacataccca
gcccaaagtctatgttttagtgagttagtaatctcttttgtaagtagtca
catcatttgactaagttatggctgacaaggtaagcataaggtggtacgtt
acttcgagaaatatccctgtaaagggaaaacgtagaagttttagcaagtt
gtagtttggagtctgtacttttgttggtctaacgtgaagttagtttccta
aaagtggaattttatgattgatgagaaggattcataaaacttgtagggtt
acgcggttgctctcacagtagatcagtgagaggtacaggggatccacatg
cacgcaacttctgtatagtcacttcccataaagctgtgggccacgtcaac
aaaagtctggttttgatatgtgatagtcacatggagtgctagccactagg
aggtcacttgactgtttagaatttttttctccataataatttatcattta
tatccctattgctacctctgctcatgtctctcctacacatctctcctcta
tgccctcccttccttctgggaggagctgcacatgtcccaccctggacatc
agctgttctagaatttttatggagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_93532585_93533791
seq2: B6Ng01-063D07.b_44_1215 (reverse)

seq1  CCATACAGCAGAGGACTGCCTGGTCTGGCCTCAGTGACAGAAGACACACC  50
      |||||||||  ||||||||||| | ||  ||||  ||||| ||||||| |
seq2  CCATACAGC--AGGACTGCCTGTTTTG--CTCA--GACAG-AGACACA-C  42

seq1  TAAACCTTGAGAGAGACTTGAGGCCCCAGAGGGGGGGGTCTGGTGGGGTA  100
      |||| |||||| ||||| ||||   ||||| |||||||||||   |||||
seq2  TAAA-CTTGAG-GAGAC-TGAG---CCAGA-GGGGGGGTCTG--TGGGTA  83

seq1  GGGAGTGGGTACATCTTGGAGACAGGAGAGAAGGAATGGGATGAGGAACT  150
       |||| ||||||||||  |||||||||||||| ||||||||||| |||| 
seq2  -GGAG-GGGTACATCT--GAGACAGGAGAGAA-GAATGGGATGA-GAAC-  126

seq1  GTCTGAAGGTAGATCGGGAGGGGGATAATGACTGGACTGTAAAAAATAAT  200
      ||||||| |||||||||   |||||||||||||||||||| |||||||| 
seq2  GTCTGAA-GTAGATCGG--AGGGGATAATGACTGGACTGT-AAAAATAA-  171

seq1  TAAATAATAATAATAATAATAATATGTAAACTCTTGACATGAAGAAAAAT  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||| 
seq2  TAAATAATAATAATAATAATAATATGTAACCTCTTGACATGAAGAAAAA-  220

seq1  TCTTTCTGTTTTCCTTTATGCTTTATTTCCCTTGATGGATTTGGCCCAGT  300
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  TCTTTCTGTTTTCC-TTATGCTTTATTTCCCTTGATGGATTT-GCCCAGT  268

seq1  CCAAATACTCATAGGAGAGAGAACAAGCTATATTCATTTCTGAGTTGTCT  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCAAATACTCATAGGAGAGAGAACAAGCTATATTCATTTCTGAGTT-TCT  317

seq1  GGCAACTCATGACTTAGAACTGAAATTTCATTCTAAGAATGGCAGACTCC  400
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCAACTCATGACTTAGAACTGAAA-TTCATTCTAAGAATGGCAGACTCC  366

seq1  CTGGGGCCTGAATGTCCACGGTGCTAGAGAGTTGTTTTTGGTGTTGGCTT  450
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGG-CTGAATGTCCACGGTGCTAGAGAGTTGTTTTTGGTGTTGGCTT  415

seq1  GGATGCCTAGTGTCTCTCCCTCATTTAGTTCAAAGGCCATGGAGGCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCTAGTGTCTCTCCCTCATTTAGTTCAAAGGCCATGGAGGCTTGG  465

seq1  TACATTCCACTATCTACAAGGTCCTGAATGAGGGCAGTTGAGTCAGCAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCACTATCTACAAGGTCCTGAATGAGGGCAGTTGAGTCAGCAAC  515

seq1  TGGAGAGGAGGAGGGAAGTAGGCACTTTCACTGTGTTGCAAAGCAAGGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGAGGAGGGAAGTAGGCACTTTCACTGTGTTGCAAAGCAAGGGT  565

seq1  CACTGTGGTTGTCTCCCTGTTTGCCCTGAGTTGGACCTTTGTGACTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGGTTGTCTCCCTGTTTGCCCTGAGTTGGACCTTTGTGACTGAAG  615

seq1  AGCAGAGTTGCTTTTCCACAGATATATGTATACTTGTGATGGACTGCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGTTGCTTTTCCACAGATATATGTATACTTGTGATGGACTGCGTG  665

seq1  TCATATCTACTGTGAAGATTAGCTAGATAAAAGAGAGAAAACATAAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCTACTGTGAAGATTAGCTAGATAAAAGAGAGAAAACATAAAAAG  715

seq1  GTGGTACACTCAAGTAGTTGTGTAAACTAGGGCCATGAAAGCTGTAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACACTCAAGTAGTTGTGTAAACTAGGGCCATGAAAGCTGTAATTT  765

seq1  GAAAACTACGTGGGTGGTAGTGTTGCTGAAGAGAGGAAGGAAGAGATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTACGTGGGTGGTAGTGTTGCTGAAGAGAGGAAGGAAGAGATAAT  815

seq1  TATGGGAAAAATACCTCAGACACATACATCAAGAGATACTAATTACATAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAAAATACCTCAGACACATACATCAAGAGATACTAATTACATAA  865

seq1  CGTGGTTAATTTAGGAAATGTAGCTGACTTAGAGTCACATTGTTCATGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTTAATTTAGGAAATGTAGCTGACTTAGAGTCACATTGTTCATGAC  915

seq1  TTCAGATCTTGAAGCAGTATCAAAATGACCGTGGGACATGCTGGCATAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATCTTGAAGCAGTATCAAAATGACCGTGGGACATGCTGGCATAGT  965

seq1  TTAGGAGGAATGAGAAGAATACTGCTAAAAATCTAACACGTTAAAGTTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGGAATGAGAAGAATACTGCTAAAAATCTAACACGTTAAAGTTGT  1015

seq1  AGTAGTTTGCCATGTATTTTGCCTTTTTTTGTTCTCAATGTTAATGAAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTGCCATGTATTTTGCCTTTTTTTGTTCTCAATGTTAATGAAAT  1065

seq1  AGCTTTTACTACAGGTATTGCTGTGCCTGTCAGATGAGAGAACTGAGTCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTACTACAGGTATTGCTGTGCCTGTCAGATGAGAGAACTGAGTCC  1115

seq1  AGGAGTGATCTCTTTATCCAAGTGTGAAAACTGAAGGTCTTTCAGATGCC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTGATCTCTTTATCCAAGTGTGAAAACTGAAGGTCTTTCAGATGCC  1165

seq1  TGAATTC  1207
      |||||||
seq2  TGAATTC  1172

seq1: chr12_93429265_93430416
seq2: B6Ng01-063D07.g_66_1191

seq1  GAATTCCAGGGTTATCAGTGCAGAGGAGCAAGGTAATGGGAAGGAACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTTATCAGTGCAGAGGAGCAAGGTAATGGGAAGGAACTAC  50

seq1  CTGGATGAAAGCATCCACCTTGACCTTCAGGGAAGGAGTCACTTGGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGAAAGCATCCACCTTGACCTTCAGGGAAGGAGTCACTTGGAGCC  100

seq1  TGGGTAGAAACCTAAAAACGCCCATAGGGTTTCAAATATATAAAGCAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAGAAACCTAAAAACGCCCATAGGGTTTCAAATATATAAAGCAAAC  150

seq1  ATTGGCCCTGGCATCCCTATAGTGTTCTTCCCTATAAAATGTTAATACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCCCTGGCATCCCTATAGTGTTCTTCCCTATAAAATGTTAATACCA  200

seq1  TCACAGCAAACATACCACATTTCGTGTGTCTGTTACCTTTTCCCCCTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAAACATACCACATTTCGTGTGTCTGTTACCTTTTCCCCCTCTA  250

seq1  CAAATGACCAGGAATAATTTGTCACGGTGCCAAAAAATCAAGTCTTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGACCAGGAATAATTTGTCACGGTGCCAAAAAATCAAGTCTTCATG  300

seq1  CTTGAGAACTGCAAAATAATTCAGATGGAAAAGTGATAATAGATGATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAACTGCAAAATAATTCAGATGGAAAAGTGATAATAGATGATAAG  350

seq1  AACTTTTCATTATATGGAAACATTTTGACTTTTTCTAAAACAATAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCATTATATGGAAACATTTTGACTTTTTCTAAAACAATAAATTC  400

seq1  AAATTTGTAGTTTTGTCCATCTAGTATGTAAACTTTTAAGAATGAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTAGTTTTGTCCATCTAGTATGTAAACTTTTAAGAATGAATTTT  450

seq1  TTCAGCCTCCTTGAGGAAGTGGATGTGTCACAGTGTGGAAATCCCTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCCTCCTTGAGGAAGTGGATGTGTCACAGTGTGGAAATCCCTATTT  500

seq1  TCTTCCCAAACCACTGGACTTTAAGTTTACTAAGAGAAGCAACATACCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCAAACCACTGGACTTTAAGTTTACTAAGAGAAGCAACATACCCA  550

seq1  GCCCAAAGTCTATGTTTTAGTGAGTTAGTAATCTCTTTTGTAAGTAGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAAGTCTATGTTTTAGTGAGTTAGTAATCTCTTTTGTAAGTAGTCA  600

seq1  CATCATTTGACTAAGTTATGGCTGACAAGGTAAGCATAAGGTGGTACGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTTGACTAAGTTATGGCTGACAAGGTAAGCATAAGGTGGTACGTT  650

seq1  ACTTCGAGAAATATCCCTGTAAAGGGAAAACGTAGAAGTTTTAGCAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCGAGAAATATCCCTGTAAAGGGAAAACGTAGAAGTTTTAGCAAGTT  700

seq1  GTAGTTTGGAGTCTGTACTTTTGTTGGTCTAACGTGAAGTTAGTTTCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTGGAGTCTGTACTTTTGTTGGTCTAACGTGAAGTTAGTTTCCTA  750

seq1  AAAGTGGAATTTTATGATTGATGAGAAGGATTCATAAAACTTGTAGGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGAATTTTATGATTGATGAGAAGGATTCATAAAACTTGTAGGGTT  800

seq1  ACGCGGTTGCTCTCACAGTAGATCAGGTGAGAGGTACAGGGGATCCACAT  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACGCGGTTGCTCTCACAGTAGATCA-GTGAGAGGTACAGGGGATCCACAT  849

seq1  GCACGCAACTTCTGTATAGTCACTTCCCATAAAGCTGTGGGCCACGTCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCAACTTCTGTATAGTCACTTCCCATAAAGCTGTGGGCCACGTCAA  899

seq1  C-ACAGTCTGGTTTTGATATGTGATAGTCACATGGAGTGCTAGCCACTAG  949
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCTGGTTTTGATATGTGATAGTCACATGGAGTGCTAGCCACTAG  949

seq1  GGAGGGTCACTTGAACCTTGTTTAGAATTTTTTTCTCCATTAATTAATTT  999
      |   ||||||||||    ||||||||||||||||||||||  | ||||||
seq2  G--AGGTCACTTGA---CTGTTTAGAATTTTTTTCTCCAT--AATAATTT  992

seq1  ATCCATTTTATATCCCTATTGCTACCTCTGCCTCCATGTCTCTCCTCACA  1049
      |||   |||||||||||||||||||||||||   |||||||||||| |||
seq2  ATC--ATTTATATCCCTATTGCTACCTCTGC--TCATGTCTCTCCT-ACA  1037

seq1  CAATCTCTCCTCCTATTGCCCCTCCCCTTCTCTTCTGGGAGGGAGGTCTG  1099
      | ||||||||| ||| |||||   |||||| ||||||||| ||||  |||
seq2  C-ATCTCTCCT-CTA-TGCCC--TCCCTTC-CTTCTGGGA-GGAG--CTG  1078

seq1  CACCATGTCCCCCAACCCTGGCACATCAGCTG-TCTAGAATTTTTACTGG  1148
      || ||||||||   ||||||| |||||||||| ||||||||||||| |||
seq2  CA-CATGTCCC---ACCCTGG-ACATCAGCTGTTCTAGAATTTTTA-TGG  1122

seq1  AGCC  1152
      ||||
seq2  AGCC  1126