BAC Information

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BAC

Clone NameB6Ng01-063M03
Chromosome12 (Build37)1 (Build37)
Map Location 48,430,970 - 48,431,807181,197,362 - 181,198,528
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC664952, Nova1, LOC100039190
Downstream geneEG664891
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063M03.bB6Ng01-063M03.g
ACCDH883752DH883753
length9691,156
definitionDH883752|Mus musculus domesticus DNA, BAC clone: B6Ng01-063M03, 5' end.DH883753|Mus musculus domesticus DNA, BAC clone: B6Ng01-063M03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(48,430,970 - 48,431,807)(181,197,362 - 181,198,528)
sequence
gaattcagggatcaaaaagcgtggaaaaatttgaatgtcatgtcgagctg
gtatcggcttctggaacaccgaaaggatctctcatctcggctccatcctt
tgtgcttgtgggatcatccaccacatccacaggggcaactggatcaggag
cctcattcttgcagcgtctcaccaatctctccggcacccaaagaggttcc
gtctggtcctgtggaaacacacaaacagaccctctcgcccacatcaacac
cggatctggtgaatccccaggggagatggacacaatacctcgtggtaatg
agaccataacctcaatcacctgtgtgtccatctggggagtcaatatgaga
gtcaagttttcactgctgaggaggcatagggaggaggcacagaagctaat
tcgccttcctcctccgcctcggctcttttattttgtcctttctgtccacc
tgataacactgtgtctcctttctttttcctttttctttttaagcccttct
cttccgacatactttcttgttgctctataaggattttctgacctgtcttg
actgcctcttgattcaaacagtaacagagtccatatatcagaacaaacaa
gaccaaaactatcagacctacccacaaagggtcaacgggagaaaaaagca
taactactcagcgaggatctattgatcactacactgaggttatcatagtt
ccttaatctgtcctgaaaccaggaaccttaacttgtcccaaagccatgaa
ccttatcattactttgtgcctccttcctggcaactttatacttgcctcaa
ttttatccgaggtccttcccaaactcctggggtcgcaagtttcactcacc
gtgaacttaccctgccagcaaccactgactgctgaaagttctgaactcgg
tggggagtcggtccccgtacggccaccaattgtcgtgcccgctctcgacc
agcagacgatgcgaccacc
gaattcttcctggcaaggaactaatgttgtctacaacaacttactaaatt
ctgcaaaaacaattaggagggtccagagagttccagtgcatagaaatggg
ctaaattttgagggggtgggaatgctaactgcggtggttattaggaagtg
taaccctgttagaggcagtatgcactgtggaggtaggctttgagagagct
tcctcctggctgcctgagggtgccagtcctctcctggctgcaattggact
aagatgcagaacttttagctctttctccatcacccagtctgcctggatgc
tgccatgatgataatggactgaacctctgacactgtaagcgatcctcaat
ataagagtcatgtctcagtataagagctgccttggtcacggtgtctcttc
acaacaatggaaaccctaactaagacactactaagtaagctgatttgatt
agtaacacatttcatttacatgtattgaattattccttgaacccaggtgt
gtgcccactgctgcacctcactgccaggtgtttgtgatattgtttgctaa
gatagagtcggaaaatctccccagtaaccacagccggggccaatctggag
ttactgcacctgcattagactctttccttgtttccctcccatatccattt
cttgagaaatcaatcattttgcattgtttagatctggaaatcccctactc
cccccttgtcctcccccgaccagggcctataaaaactgggacccctttcc
ccttggggtcgactcctctacctctgcatgggatatgagtcatctccaga
gctctggctttccccgaataaagcctcatgtggtttgcatcaagcttggt
ctctcgtgagttcttggggggtctgctattgtcccgaggcttgagcgagg
ggctcttctcggggactttcaagatgtttgcaaagccttgctgagatttc
atcgtgcctaatgaatatcttgtgaggcaatttcatgacttttttttaac
acaaagaagaacaaactcctaactttactctgtcatgctgccctatccct
gctctttgaaatgtttatataaaaaacaaacttctagctttaggccaagg
cttgagaatgtgacctttgtgaccaatgctcaagcatgctaatatataaa
aacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_48430970_48431807
seq2: B6Ng01-063M03.b_47_876

seq1  AATTCAGGGATCAAAAAGCGTGGAAAAATTTGAATATCATGTCGAGCTGG  50
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AATTCAGGGATCAAAAAGCGTGGAAAAATTTGAATGTCATGTCGAGCTGG  50

seq1  TATCGGCTTCTGGAATACCGAAAGGATCTCTCATCTCGGCTCCATCCTTT  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATCGGCTTCTGGAACACCGAAAGGATCTCTCATCTCGGCTCCATCCTTT  100

seq1  GTGCTTGTGGGATCATCCACCACATCCACAGGGGCAATTGGATCAGGAGC  150
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGCTTGTGGGATCATCCACCACATCCACAGGGGCAACTGGATCAGGAGC  150

seq1  CTCATTCTTGCAGCGTCTCACCAACCTCTCCAGCACCCAAAGAGGTTCCG  200
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  CTCATTCTTGCAGCGTCTCACCAATCTCTCCGGCACCCAAAGAGGTTCCG  200

seq1  TCTGGTCCTGTGGAAACACACAAACAGACCCTCTCGCCCATGTCAACACC  250
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  TCTGGTCCTGTGGAAACACACAAACAGACCCTCTCGCCCACATCAACACC  250

seq1  TGATCCTGTCGAT-CCCAGGGGGGATGGACACAATACCTCGTGGTAATGA  299
       ||||  ||  || |||||||| |||||||||||||||||||||||||||
seq2  GGATCTGGTGAATCCCCAGGGGAGATGGACACAATACCTCGTGGTAATGA  300

seq1  GACCATAACCTCAATCACCTGTGTGTTCATCTGGGGAGTCAATATGAGAG  349
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GACCATAACCTCAATCACCTGTGTGTCCATCTGGGGAGTCAATATGAGAG  350

seq1  TCAAGTTTTCACTGCTGAGGAGGCATAGGGAGGAGGCACAGAAGCTAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTTCACTGCTGAGGAGGCATAGGGAGGAGGCACAGAAGCTAATT  400

seq1  CGCCTTCCTCCTCTGCCTCGGCTCTTTTATTTTGTCCTTTCTGTCCACCT  449
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CGCCTTCCTCCTCCGCCTCGGCTCTTTTATTTTGTCCTTTCTGTCCACCT  450

seq1  GATAACACTGTGTCTCCTTTCTTTTTCCTTTTTCTTTTTAAGCCCTTCTC  499
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  GATAACACTGTGTCTCCTTTCTTTTTCCTTTTTCTTTTTAAGCCCTT---  497

seq1  CTCTTCCGACATACTTTCTTGTTGCTCTGTAAGGATTTTCTGACCTGTCT  549
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTCTTCCGACATACTTTCTTGTTGCTCTATAAGGATTTTCTGACCTGTCT  547

seq1  TGACTGCCTCTACACACAGTTTCAAACAGTAACAGAGTCCATATATCAGA  599
      |||||||||||       | ||||||||||||||||||||||||||||||
seq2  TGACTGCCTCT------TGATTCAAACAGTAACAGAGTCCATATATCAGA  591

seq1  ACAAACAAGACCAAAACTATCAGACCTACCCACAAAGGGTCAATGGGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ACAAACAAGACCAAAACTATCAGACCTACCCACAAAGGGTCAACGGGAGA  641

seq1  AAAAAGCATAACTACACAGCGAGGATCTCTTGATCACTACACTGAGGTTA  699
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  AAAAAGCATAACTACTCAGCGAGGATCTATTGATCACTACACTGAGGTTA  691

seq1  TCATAGTTCCTTAACTTGTCCCAAAACCAGGAACCTTAACTTGTCCCAAA  749
      ||||||||||||||  |||||  |||||||||||||||||||||||||||
seq2  TCATAGTTCCTTAATCTGTCCTGAAACCAGGAACCTTAACTTGTCCCAAA  741

seq1  GCCAGGAACCTTATCGTTACTTTGTGCCTCCTTCCTGGCAACTTTATACT  799
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCCATGAACCTTATCATTACTTTGTGCCTCCTTCCTGGCAACTTTATACT  791

seq1  TGCCTCTATTTTATCCGAGGTCCTTCCCAAACTCCTGGG  838
      |||||| ||||||||||||||||||||||||||||||||
seq2  TGCCTCAATTTTATCCGAGGTCCTTCCCAAACTCCTGGG  830

seq1: chr1_181197362_181198528
seq2: B6Ng01-063M03.g_65_1220

seq1  GAATTCTTCCTGGCAAGGAACTAATGTTGTCTACAACAACTTACTAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCTGGCAAGGAACTAATGTTGTCTACAACAACTTACTAAATT  50

seq1  CTGCAAAAACAATTAGGAGGGTCCAGAGAGTTCCAGTGCATAGAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAAACAATTAGGAGGGTCCAGAGAGTTCCAGTGCATAGAAATGGG  100

seq1  CTAAATTTTGAGGGGGTGGGAATGCTAACTGCGGTGGTTATTAGGAAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTTGAGGGGGTGGGAATGCTAACTGCGGTGGTTATTAGGAAGTG  150

seq1  TAACCCTGTTAGAGGCAGTATGCACTGTGGAGGTAGGCTTTGAGAGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTGTTAGAGGCAGTATGCACTGTGGAGGTAGGCTTTGAGAGAGCT  200

seq1  TCCTCCTGGCTGCCTGAGGGTGCCAGTCCTCTCCTGGCTGCAATTGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTGGCTGCCTGAGGGTGCCAGTCCTCTCCTGGCTGCAATTGGACT  250

seq1  AAGATGCAGAACTTTTAGCTCTTTCTCCATCACCCAGTCTGCCTGGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCAGAACTTTTAGCTCTTTCTCCATCACCCAGTCTGCCTGGATGC  300

seq1  TGCCATGATGATAATGGACTGAACCTCTGACACTGTAAGCGATCCTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGATGATAATGGACTGAACCTCTGACACTGTAAGCGATCCTCAAT  350

seq1  ATAAGAGTCATGTCTCAGTATAAGAGCTGCCTTGGTCACGGTGTCTCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTCATGTCTCAGTATAAGAGCTGCCTTGGTCACGGTGTCTCTTC  400

seq1  ACAACAATGGAAACCCTAACTAAGACACTACTAAGTAAGCTGATTTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAATGGAAACCCTAACTAAGACACTACTAAGTAAGCTGATTTGATT  450

seq1  AGTAACACATTTCATTTACATGTATTGAATTATTCCTTGAACCCAGGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACACATTTCATTTACATGTATTGAATTATTCCTTGAACCCAGGTGT  500

seq1  GTGCCCACTGCTGCACCTCACTGCCAGGTGTTTGTGATATTGTTTGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCACTGCTGCACCTCACTGCCAGGTGTTTGTGATATTGTTTGCTAA  550

seq1  GATAGAGTCGGAAAATCTCCCCAGTAACCACAGCCGGGGCCAATCTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAGTCGGAAAATCTCCCCAGTAACCACAGCCGGGGCCAATCTGGAG  600

seq1  TTACTGCACCTGCATTAGACTCTTTCCTTGTTTCCCTCCCATATCCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCACCTGCATTAGACTCTTTCCTTGTTTCCCTCCCATATCCATTT  650

seq1  CTTGAGAAATCAATCATTTTGCATTGTTTAGATCTGGAAATCCCCTACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAATCAATCATTTTGCATTGTTTAGATCTGGAAATCCCCTACTC  700

seq1  CCCCCTTGTCCTCCCCCGACCAGGGCCTATAAAAACTGGGACCCCTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTGTCCTCCCCCGACCAGGGCCTATAAAAACTGGGACCCCTTTCC  750

seq1  CCTTGGGGTCGACTCCTCTACCTCTGCATGGGATATGAGTCATCTCCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGTCGACTCCTCTACCTCTGCATGGGATATGAGTCATCTCCAGA  800

seq1  GCTCTGGCTTTCCCCGAATAAAGCCTCATGTGGTTTGCATCAAGCTTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCTTTCCCCGAATAAAGCCTCATGTGGTTTGCATCAAGCTTGGT  850

seq1  CTCTCGTGAGTTCTT-GGGGGTCTGCTATTGTCCCGAGGCTTGAGCGAGG  899
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCTCGTGAGTTCTTGGGGGGTCTGCTATTGTCCCGAGGCTTGAGCGAGG  900

seq1  GGCTCCTCTCGGGGACTTTCAGGATGTTTGCAAAGCCTTGCTGAGATTTT  949
      ||||| ||||||||||||||| |||||||||||||||||||||||| |||
seq2  GGCTCTTCTCGGGGACTTTCAAGATGTTTGCAAAGCCTTGCTGAGA-TTT  949

seq1  CATCGTGCCTAATGAATAATTCTTGTGAGGCAATTTCATGACTTTTTTTT  999
      ||||||||||||||||||  |||||||||||||||||||||| |||||||
seq2  CATCGTGCCTAATGAATA--TCTTGTGAGGCAATTTCATGAC-TTTTTTT  996

seq1  TAACACCAAAGAAGACACAAACTCCTAACTGTACTCTGTCCATGGCTGCC  1049
      ||||| ||||||||| |||||||||||||| |||||||| ||| ||||||
seq2  TAACA-CAAAGAAGA-ACAAACTCCTAACTTTACTCTGT-CAT-GCTGCC  1042

seq1  CTATCCCTGCTCTTGAAAATGTATAATATAAAAACAAAACTTCTAGGCCT  1099
      ||||||||||||||  |||||| | |||||||||  ||||||||||  ||
seq2  CTATCCCTGCTCTTTGAAATGT-TTATATAAAAAACAAACTTCTAG--CT  1089

seq1  TTAGGCCCAGGCTTGAGAATGTGACCTTTGTGACTCAATGCTCCAAGGCA  1149
      ||||||| |||||||||||||||||||||||||| ||||||||  | |||
seq2  TTAGGCCAAGGCTTGAGAATGTGACCTTTGTGAC-CAATGCTC--AAGCA  1136

seq1  TGCTAAT-CAT-AAAACAGA  1167
      |||||||  || ||||||||
seq2  TGCTAATATATAAAAACAGA  1156