BAC Information

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BAC

Clone NameB6Ng01-064O17
Chromosome12 (Build37)
Map Location 79,847,165 - 79,893,039
singlet/doubletdoublet
Overlap geneMpp5
Upstream geneLOC666659, EG626215, Gphn, 4921509E07Rik
Downstream geneAtp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064O17.bB6Ng01-064O17.g
ACCDH884563DH884564
length1,0901,080
definitionDH884563|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O17, 5' end.DH884564|Mus musculus domesticus DNA, BAC clone: B6Ng01-064O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,847,165 - 79,848,272)(79,891,948 - 79,893,039)
sequence
gaattcctccaggacagagtctatcagctgtttcaactcctatagcacaa
tgctattctgaatgttcccccaaatttaaagcagcatggcgttctactac
tttaatacatcggtgggtgatataagcagatatcaagacaaagaaggagg
aagaacgtgtcctatggttgttcttcttcttacagttggttttacagttt
ggctttctctattcatccgtaatgtttagttacaaatcagccagggtgac
tcagcaggtggactgccttctgacaaggacgaacagttagttcttcaaac
aggaggttttaaaataaattactgattactattttattccactttgggat
gaatgttatattgtcttaactcccgtactacccatgttagactccatttg
cagaagctcccagtcataaaatcagaaacaaaagccctcttaagttacaa
atgagaaaatttaagtccaggaaggcttgttgcacatccacataatagca
ctctcatcactttgcctgcagtttttatactttctgctctttcaggtacc
catttttgcatacaaggccagtaattagtgtgatattggggttctggaaa
atgttctatttaccaaagaataggtttcatatttgccacaatcttctctt
tttaaaaataaaaagtttatattctatacttaggatataaaataataaaa
atttcctgtactttataaaggaatctcccatatttccagagtagcagctg
ccccattgcttcacactaatagtgattgatcattttatcagagtggagcc
tacaagaggaaaacctaagcaactggggaagcaaggcaaggtagttaccc
ggcagggtgttcattagggaagaaatgttttggaaagctgtctggatggg
gctattggaggtatgaagagaatgctttctaggagcctggaagataagtg
ttagatgtttggtgcctctgagagaaatggttcagttcctagcacccaaa
tggtgaatgtatgtctgcagtctgaggactcaggaatccaagatctctgc
ctcccaaccccaggcataggtacacatcaccataatgcag
gaattcttccttagtatgtatgcaactctgtgttcaaatgccaggcaaca
cgcctcacccccaaaaaaatataaaaaaagaaagaaaaaaggagctatcc
ttgttatgtgtaatctctgtctgtctgtctctctgtgtgtgtgctgtgtg
tttggggagtgtttcagacagactcctgcagcttatgctggcctggaact
cactatgtggctgacggtgatcttgaacttctaatcatctcatctctacc
tctcaagtgctgggtttataagtgtgtgctacctgctgggcagaaacact
tttttaaaaaggctatattcacatcatataaagaccctatttacctgctg
aggatgtagcttaatatggtatatcatgcatctagcaagcataagccctg
gactcactcctgaacacacatgactcaacttactcaacaatacttaacta
gatgcatgagttgcagtttcacaaacttctacttaacaatgaatgactcc
ttcgtccccttctccggaaaacaaaaacaaaaaaacaaaaacaaacaaaa
aactccacaaaaacaaaaaacaaggatctaattatatccaaaacaaagta
aatacaagtcaaaactgaaatacagggaagttagtcacatgaggcattaa
ctcaaattattactcaataaaataagggcacaaatttaaacaaaaatcaa
tcttcaagaaacaaatgaaaaaaatccttttgtttttttgctttgagaca
gggttacgtgcagcctaggctggcctagaatctgctatgtaactgaggca
gactttcaatttatctcctgcttccttttcctaagtgtgtggactacagg
catactattcccggctgggaagctggttcataatcaccaaagtaaagaca
cttttgtggttgttttgaggatttttttgtattaattttaattatgtgta
tttatatcttttttttttttggatatgcacgggtggtgcctatttctgtg
gggggcagagcatcgatccttgaagctggagttacaacatgtgtcagcca
tctgatctgacctggagagcagtcatgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79847165_79848272
seq2: B6Ng01-064O17.b_47_1136

seq1  GAATTCCTCCAGGACAGAGTCTATCAGCTGTTTCAACTCCTATAGCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCAGGACAGAGTCTATCAGCTGTTTCAACTCCTATAGCACAA  50

seq1  TGCTATTCTGAATGTTCCCCCAAATTTAAAGCAGCATGGCGTTCTACTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTCTGAATGTTCCCCCAAATTTAAAGCAGCATGGCGTTCTACTAC  100

seq1  TTTAATACATCGGTGGGTGATATAAGCAGATATCAAGACAAAGAAGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATACATCGGTGGGTGATATAAGCAGATATCAAGACAAAGAAGGAGG  150

seq1  AAGAACGTGTCCTATGGTTGTTCTTCTTCTTACAGTTGGTTTTACAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGTGTCCTATGGTTGTTCTTCTTCTTACAGTTGGTTTTACAGTTT  200

seq1  GGCTTTCTCTATTCATCCGTAATGTTTAGTTACAAATCAGCCAGGGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCTCTATTCATCCGTAATGTTTAGTTACAAATCAGCCAGGGTGAC  250

seq1  TCAGCAGGTGGACTGCCTTCTGACAAGGACGAACAGTTAGTTCTTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGGTGGACTGCCTTCTGACAAGGACGAACAGTTAGTTCTTCAAAC  300

seq1  AGGAGGTTTTAAAATAAATTACTGATTACTATTTTATTCCACTTTGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTTTAAAATAAATTACTGATTACTATTTTATTCCACTTTGGGAT  350

seq1  GAATGTTATATTGTCTTAACTCCCGTACTACCCATGTTAGACTCCATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTATATTGTCTTAACTCCCGTACTACCCATGTTAGACTCCATTTG  400

seq1  CAGAAGCTCCCAGTCATAAAATCAGAAACAAAAGCCCTCTTAAGTTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTCCCAGTCATAAAATCAGAAACAAAAGCCCTCTTAAGTTACAA  450

seq1  ATGAGAAAATTTAAGTCCAGGAAGGCTTGTTGCACATCCACATAATAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAAATTTAAGTCCAGGAAGGCTTGTTGCACATCCACATAATAGCA  500

seq1  CTCTCATCACTTTGCCTGCAGTTTTTATACTTTCTGCTCTTTCAGGTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATCACTTTGCCTGCAGTTTTTATACTTTCTGCTCTTTCAGGTACC  550

seq1  CATTTTTGCATACAAGGCCAGTAATTAGTGTGATATTGGGGTTCTGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGCATACAAGGCCAGTAATTAGTGTGATATTGGGGTTCTGGAAA  600

seq1  ATGTTCTATTTACCAAAGAATAGGTTTCATATTTGCCACAATCTTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTATTTACCAAAGAATAGGTTTCATATTTGCCACAATCTTCTCTT  650

seq1  TTTAAAAATAAAAAGTTTATATTCTATACTTAGGATATAAAATAATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATAAAAAGTTTATATTCTATACTTAGGATATAAAATAATAAAA  700

seq1  ATTTCCTGTACTTTATAAAGGAATCTCCCATATTTCCAGAGTAGCAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGTACTTTATAAAGGAATCTCCCATATTTCCAGAGTAGCAGCTG  750

seq1  CCCCATTGCTTCACACTAATAGTGATTGATCATTTTATCAGAGTGGAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTGCTTCACACTAATAGTGATTGATCATTTTATCAGAGTGGAGCC  800

seq1  TACAAGAGGAAAACCTAAGCAACTGGGGAAGCAAGGCAAGGTAGTTACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGGAAAACCTAAGCAACTGGGGAAGCAAGGCAAGGTAGTTACCC  850

seq1  GGCAGGGGTGTTCATTAGGGAAGAAATGTTTTGGAAAGCTGTCTGGATGG  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCA-GGGTGTTCATTAGGGAAGAAATGTTTTGGAAAGCTGTCTGGATGG  899

seq1  GGCTATTGGAAGGTATGAAGAGAAATGCTTTCTAGGAGCCTGGAAAGATA  950
      ||||||||| |||||||||||| |||||||||||||||||||| ||||||
seq2  GGCTATTGG-AGGTATGAAGAG-AATGCTTTCTAGGAGCCTGG-AAGATA  946

seq1  AGTGTTAAGAATGTTTGGTGCTCTTGAGGAGGAAATGGGTTCAGTTCCTA  1000
      |||||||   |||||||||||   ||||   ||||| |||||||||||||
seq2  AGTGTTA--GATGTTTGGTGCCTCTGAG--AGAAAT-GGTTCAGTTCCTA  991

seq1  GCACCCAAATGGTGAATTGTAATTGTCTGCAGTCTGA-GACTCAGGGAAT  1049
      |||||||||||||||| ||||  |||||||||||||| |||||| |||||
seq2  GCACCCAAATGGTGAA-TGTA--TGTCTGCAGTCTGAGGACTCA-GGAAT  1037

seq1  CCAAAGATCTCTGCCTCACCAAACACCAGGCAATAGGTAACACATACACA  1099
      || |||||||||||||  || ||| |||||| |||||| |||||| ||| 
seq2  CC-AAGATCTCTGCCT--CCCAACCCCAGGC-ATAGGT-ACACAT-CACC  1081

seq1  TAAATGCAG  1108
        |||||||
seq2  ATAATGCAG  1090

seq1: chr12_79891948_79893039
seq2: B6Ng01-064O17.g_69_1148 (reverse)

seq1  GAACATGTACTGCTCTTCCCAGTGCTCAGATCAGATGGCTGACAACTGTT  50
      ||||||| ||||||||  |||  | |||||||||||||||||||  || |
seq2  GAACATG-ACTGCTCT--CCA--GGTCAGATCAGATGGCTGACACATG-T  44

seq1  TGTAACTCCAGCTCCAAGGATCTGATGCCTCTGGCCACCACAGAAATAGG  100
      ||||||||||||| |||||||| |||| ||||| || |||||||||||||
seq2  TGTAACTCCAGCTTCAAGGATC-GATG-CTCTGCCCCCCACAGAAATAGG  92

seq1  CA-CACACGTGCATATACCAAAAAAAAAAAAAAGATATAAATACACATAA  149
      || ||| ||||||||| |   |||||||||||||||||||||||||||||
seq2  CACCACCCGTGCATATCC---AAAAAAAAAAAAGATATAAATACACATAA  139

seq1  TTAAAAATAATACAAAAAAAATCCTCAAAACAACCACAAAAGTGTCTTTA  199
      |||||| |||||| ||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTAATAC-AAAAAAATCCTCAAAACAACCACAAAAGTGTCTTTA  188

seq1  CTTTGGTGATTATGAACCAGCTTCCCAGCCGGGAATAGTATGCCTGTAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGATTATGAACCAGCTTCCCAGCCGGGAATAGTATGCCTGTAGT  238

seq1  CCACACACTTAGGAAAAGGAAGCAGGAAGATAAATTGAAAGTCTGCCTCA  299
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCACACACTTAGGAAAAGGAAGCAGG-AGATAAATTGAAAGTCTGCCTCA  287

seq1  GTTACATAGCAGATTCTAGGCCAGCCTAGGCTGCACGTAACCCTGTCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATAGCAGATTCTAGGCCAGCCTAGGCTGCACGTAACCCTGTCTCA  337

seq1  AAGCAAAAAAACAAAAGGATTTTTTTCATTTGTTTCTTGAAGATTGATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAAACAAAAGGATTTTTTTCATTTGTTTCTTGAAGATTGATTT  387

seq1  TTGTTTAAATTTGTGCCCTTATTTTATTGAGTAATAATTTGAGTTAATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAATTTGTGCCCTTATTTTATTGAGTAATAATTTGAGTTAATGC  437

seq1  CTCATGTGACTAACTTCCCTGTATTTCAGTTTTGACTTGTATTTACTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGACTAACTTCCCTGTATTTCAGTTTTGACTTGTATTTACTTTG  487

seq1  TTTTGGATATAATTAGATCCTTGTTTTTTGTTTTTGTGGAGTTTTTTGTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGATATAATTAGATCCTTGTTTTTTGTTTTTGTGGAGTTTTTTGTT  537

seq1  TGTTTTTGTTTTTTTGTTTTTGTTTTCCGGAGAAGGGGACGAAGGAGTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTTTTTTGTTTTTGTTTTCCGGAGAAGGGGACGAAGGAGTCA  587

seq1  TTCATTGTTAAGTAGAAGTTTGTGAAACTGCAACTCATGCATCTAGTTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGTTAAGTAGAAGTTTGTGAAACTGCAACTCATGCATCTAGTTAA  637

seq1  GTATTGTTGAGTAAGTTGAGTCATGTGTGTTCAGGAGTGAGTCCAGGGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTTGAGTAAGTTGAGTCATGTGTGTTCAGGAGTGAGTCCAGGGCT  687

seq1  TATGCTTGCTAGATGCATGATATACCATATTAAGCTACATCCTCAGCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGCTAGATGCATGATATACCATATTAAGCTACATCCTCAGCAGG  737

seq1  TAAATAGGGTCTTTATATGATGTGAATATAGCCTTTTTAAAAAAGTGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGGGTCTTTATATGATGTGAATATAGCCTTTTTAAAAAAGTGTTT  787

seq1  CTGCCCAGCAGGTAGCACACACTTATAAACCCAGCACTTGAGAGGTAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCAGCAGGTAGCACACACTTATAAACCCAGCACTTGAGAGGTAGAG  837

seq1  ATGAGATGATTAGAAGTTCAAGATCACCGTCAGCCACATAGTGAGTTCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGATTAGAAGTTCAAGATCACCGTCAGCCACATAGTGAGTTCCA  887

seq1  GGCCAGCATAAGCTGCAGGAGTCTGTCTGAAACACTCCCCAAACACACAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCATAAGCTGCAGGAGTCTGTCTGAAACACTCCCCAAACACACAG  937

seq1  CACACACACAGAGAGACAGACAGACAGAGATTACACATAACAAGGATAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGAGAGACAGACAGACAGAGATTACACATAACAAGGATAGC  987

seq1  TCCTTTTTTCTTTCTTTTTTTATATTTTTTTGGGGGTGAGGCGTGTTGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTCTTTCTTTTTTTATATTTTTTTGGGGGTGAGGCGTGTTGCC  1037

seq1  TGGCATTTGAACACAGAGTTGCATACATACTAAGGAAGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTTGAACACAGAGTTGCATACATACTAAGGAAGAATTC  1080