BAC Information

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BAC

Clone NameB6Ng01-065C03
Chromosome12 (Build37)19 (Build37)
Map Location 80,215,514 - 80,215,98315,302,021 - 15,303,000
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722
Downstream geneArg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065C03.bB6Ng01-065C03.g
ACCDH884701DH884702
length8441,003
definitionDH884701|Mus musculus domesticus DNA, BAC clone: B6Ng01-065C03, 5' end.DH884702|Mus musculus domesticus DNA, BAC clone: B6Ng01-065C03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,215,514 - 80,215,983)(15,302,021 - 15,303,000)
sequence
gaattcttcgctggcttagaagatggaccgagctaggtccccaagcccat
ccggtgataagcacaagttccttttcatactttcctactttcatgtgtcc
ttgggagctcttctttttcccttgtatcctctggtctatcgcctggctga
ttgtgttgactcccctctttctccttgttctgaccatgcttatgattcca
tatacttatgtagcgcatgaactttcctctctgttgcccctctggaaccc
ctgttaactttctacagttggctctggtttgactttaaaatggttttccc
tttcccaacaccgattctcatgatttttatgaactgactacttccaaaca
ccataaaactgatgcactctggtttaactctgcattgtgtaattggaggg
aaggaattacagatgggtagacggagccaggcttacctcgtaaagctgta
ctcactggtactctcgttccccagctgaaaagttctgaattcatacagtt
gaatccttcttaacagtctgctttacgggaacctttatcaccgtcgttcc
ccagctgatgagttctgaattcggcagttgaatccttctcaacagtctgt
gttacgggaacctttataaacgtgatccgcagttctggttctgaaatgaa
gtatccctcctgcgccggtgatggttaactccctcccggggttttcttcc
cggtctttcggcaccaattgttatttagacgcgttctcacgaccggccag
gaagaacaccacagaccgaatcttctgcggtaaagctttattcttcatct
tcaggacagagtgcagaagcaagagagcaagaacaagatagaga
gaattctctgtttaggaatctcccctgttctttaatcactgtatgagatt
tcaacaaccttaatcatctaggaaatgcaattcataatggccctgatatt
ccacctctaccagtctgacctctaatataaaaaactcttgtgacatctta
tgtgggggaggatgtggaaaaggataaacatgcctccattgctggtggga
ttgcaaaccggtacaaccactctggaaatctgtctggtggttcctcagaa
aatttgacctacgactacctgaagacccaggtgtaccactcctgggaact
ctcaatgtaagctactaaatttgttaatgtttctttcctgtttcttacaa
tatgtataagaacccatagctataataaccaaaaacttgttcactattga
tcagtatttatagagacaggggtggctgtgcttataacccaaaaattttg
gaaggtcattattcatatcactgtcccatgccttccttggtactaatgac
aggctcaatgaagcatctaatgagtagtactattctagttagctttctat
tgctgggctaaaacagtatgaccaaggcagcttgtggaggaatgattgta
gctcattttgcatctaacaccaccactgagggaggtcatggccaaaactc
aagtgggtaactggaagcagggattgaagaaaagctatggagggaatgct
gatttactggcttgttctccatgtcttgacagctgctttcttattctagt
tgagaccacctgcccaagggtattatcattgacatagtgggtgtgatcct
tctccatcaatctttaataaaatatgtacccgtatacatctgagaaagca
aattctcatttaagactcctttcccagatgactctagctgtgtaaagtgc
aaacactacacatgtaatgggaacactgctctcaccattgttgggcactg
gatcattccagagccatggacatctaacagtgcctaccactagctatctc
ccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_80215514_80215983
seq2: B6Ng01-065C03.b_503_881 (reverse)

seq1  TCTCTCTCTTGTTCTTGCTTTTTCTCTCTCTTGTTCTTGCTTTCTCTCTC  50
                                                      ||
seq2  ------------------------------------------------TC  2

seq1  TTGCTTTCTTGTTCTTGTTCTTTTTCTCTCTCTTGCTCTCTTGCTCCTGA  100
      |  || ||||||||||| ||| || ||   || ||| ||||   ||||||
seq2  T--CTATCTTGTTCTTGCTCTCTTGCT---TC-TGCACTCT--GTCCTGA  44

seq1  AGATGTAAGCAATAAAGCTTTTGCCGCAGAAGATTCCGGTTTGCTGCGTT  150
      ||||| ||| |||||||| ||| |||||||||||| |||| ||  | |||
seq2  AGATG-AAG-AATAAAGC-TTTACCGCAGAAGATT-CGGTCTGTGGTGTT  90

seq1  CTTCCTGGCCGGTCGCGAGAACGCGT----GTAAGAGTTGGTGCTGAGAC  196
      ||||||||||||||| ||||||||||     ||| | ||||||| |    
seq2  CTTCCTGGCCGGTCGTGAGAACGCGTCTAAATAACAATTGGTGCCG----  136

seq1  CCGGGACGGGACGAAAAGACCTGGGACGAGAAATCCTGGGATGAGAAAAC  246
                    ||||||| |||| || ||| || ||||         
seq2  --------------AAAGACC-GGGAAGA-AAACCCCGGGA---------  161

seq1  CTGGGACGGTTACCATCACTGGCGCAAGGAAGATCCCTCATTCCGGAACC  296
        |||| | | |||||||| |||||| |   ||| | ||||| | |||||
seq2  --GGGA-GTTAACCATCACCGGCGCAGGAGGGATACTTCATTTCAGAACC  208

seq1  AGAACTGCGGGTCATGGTAATGAAGTGTTCCCGTAAAACAGACTGTTGAG  346
      |||||||||| ||| | | || ||| |||||||||| |||||||||||||
seq2  AGAACTGCGGATCACGTTTATAAAG-GTTCCCGTAACACAGACTGTTGAG  257

seq1  AAGGATTCAACTGCGTGAATTCAGAACTCTTCAGCTGGGGAATGGTGGTA  396
      ||||||||||||||  ||||||||||||| |||||||||||| |  ||| 
seq2  AAGGATTCAACTGC-CGAATTCAGAACTCATCAGCTGGGGAACGACGGTG  306

seq1  ATGAAGTGTTCCCACAACACAGACTGTTGAGAAGGATTCAACTGCGTGAA  446
      || ||| ||||||  ||  ||||||||| |||||||||||||||  ||||
seq2  ATAAAG-GTTCCCGTAAAGCAGACTGTTAAGAAGGATTCAACTGTATGAA  355

seq1  TTCAGAACTCTTCAGCTGGGGAAC  470
      ||||||||| ||||||||||||||
seq2  TTCAGAACTTTTCAGCTGGGGAAC  379

seq1: chr19_15302021_15303000
seq2: B6Ng01-065C03.g_116_1069 (reverse)

seq1  GGGGATATAGCTAAGTGGTAGAGCACTTGCTAGTATGTCCATGGCTCTGG  50
      ||||| |||||| |||||||| |||| || ||| ||||||||||||||||
seq2  GGGGAGATAGCT-AGTGGTAG-GCAC-TGTTAG-ATGTCCATGGCTCTGG  46

seq1  ATTTGATCCCAGTGCCCAAACAATGGTGACGAGCAGTGTTCACCATTAAC  100
      |  |||| ||||||||| ||||||||||| ||||||||||| ||||| ||
seq2  A-ATGAT-CCAGTGCCC-AACAATGGTGA-GAGCAGTGTTC-CCATT-AC  90

seq1  ATGCTGGTTAGTCTTTGTCAACTTGACACAAGCTAGAGTCATCTGGGGAA  150
      ||| ||  |||| ||||   |||| |||| |||||||||||||||||  |
seq2  ATG-TG--TAGTGTTTG--CACTTTACAC-AGCTAGAGTCATCTGGG--A  132

seq1  AAGGAGTCTTAAATTGAGAATTTGCCTTTCTCAGATTGTCTACGGGTACA  200
      ||||||||||||| |||||||||| |||||||||| ||| ||||||||||
seq2  AAGGAGTCTTAAA-TGAGAATTTG-CTTTCTCAGA-TGTATACGGGTACA  179

seq1  TATTTTTATTAAAGATTGATGGAGAAGGATCACACCCACTATGTCAATGA  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTTTATTAAAGATTGATGGAGAAGGATCACACCCACTATGTCAATGA  228

seq1  TAATACCCTTGGGCAGGTGGTCCCAACTACTATAAGAAAGCAGGCTGATC  300
      |||||||||||||||||||||| ||||||  ||||||||||| |||| ||
seq2  TAATACCCTTGGGCAGGTGGTCTCAACTAGAATAAGAAAGCA-GCTG-TC  276

seq1  AAGACATGGAGAACAAGCCAGTAAATCAGCATT-CCTCCATAGCTTCTTC  349
      ||||||||||||||||||||||||||||||||| |||||||||||| |||
seq2  AAGACATGGAGAACAAGCCAGTAAATCAGCATTCCCTCCATAGCTT-TTC  325

seq1  TTCAGTCCCTGCCTCCAGTTTCCCACTTGAGTTCTGGCCCTGACCTCCCT  399
      |||| ||||||| ||||||| |||||||||||| ||||| ||||||||||
seq2  TTCAATCCCTGCTTCCAGTTACCCACTTGAGTTTTGGCCATGACCTCCCT  375

seq1  CAGTGGTGGTGTTAGATGCAAAATGAGCTACAATCATTCCTCCACAAGCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGGTGTTAGATGCAAAATGAGCTACAATCATTCCTCCACAAGCT  425

seq1  GCCTTGGTCATACTGTTTTAGCACAGCAATAGAAAGCTAACTAGAATAGT  499
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GCCTTGGTCATACTGTTTTAGCCCAGCAATAGAAAGCTAACTAGAATAGT  475

seq1  ACTACTCATTAGATGCTTCATTGAGCCTGTCATTAGTACCAAGGAAGGCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCATTAGATGCTTCATTGAGCCTGTCATTAGTACCAAGGAAGGCA  525

seq1  TGGGACACTGATATGAATAATGACCTTCCAAAATTTTTGGCTTATAAGCA  599
      ||||||| |||||||||||||||||||||||||||||||| |||||||||
seq2  TGGGACAGTGATATGAATAATGACCTTCCAAAATTTTTGGGTTATAAGCA  575

seq1  CAGCCACCCCTGTCTCTATAAATACTGATCACTAGTGAACAAGTTTTTGG  649
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGCCACCCCTGTCTCTATAAATACTGATCAATAGTGAACAAGTTTTTGG  625

seq1  TTATTATAGCTATGGGTTCTTATACATATTGTAAGAAACAGGAAAGAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATAGCTATGGGTTCTTATACATATTGTAAGAAACAGGAAAGAAAC  675

seq1  ATTAACAAATTTAGTAGCTTACATTGAGAGTTCCCAGGAGTGGTATAGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||| | ||
seq2  ATTAACAAATTTAGTAGCTTACATTGAGAGTTCCCAGGAGTGGTACACCT  725

seq1  GGGTCCTCAGGTAGTCCTATGTCAAATTTTCTGAGGAACCACCAGACAGA  799
      ||||| |||||||||| || ||||||||||||||||||||||||||||||
seq2  GGGTCTTCAGGTAGTCGTAGGTCAAATTTTCTGAGGAACCACCAGACAGA  775

seq1  TTTCCAGAGTGGTTGTACCGGTTTGCAATCCCACCAGCAATGGAGGCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGAGTGGTTGTACCGGTTTGCAATCCCACCAGCAATGGAGGCATG  825

seq1  TTTCTCTTTTTCCACATCCTCGCCAACATCTGCTGTCACATGAGTTTTTT  899
      ||| || |||||||||||||| || ||||  | ||||||| |||||||||
seq2  TTTATCCTTTTCCACATCCTCCCCCACATAAGATGTCACAAGAGTTTTTT  875

seq1  ATCTTAGCTATTCAGACTGGTGTGAGGTGGAATCTCAGGGCCATTTTGAT  949
      || ||||    ||||||||||  |||||||||| ||||||||||| ||| 
seq2  ATATTAG-AGGTCAGACTGGT-AGAGGTGGAATATCAGGGCCATTATGAA  923

seq1  TTGCATTTCCCTGATGACTAAGGTTGTTGAA  980
      ||||||||||  ||||| |||||||||||||
seq2  TTGCATTTCCTAGATGATTAAGGTTGTTGAA  954