BAC Information

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BAC

Clone NameB6Ng01-065F08
Chromosome12 (Build37)
Map Location 118,323,160 - 118,476,299
singlet/doubletdoublet
Overlap genePtprn2
Upstream geneVipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065F08.bB6Ng01-065F08.g
ACCDH884838DH884839
length1,101471
definitionDH884838|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F08, 5' end.DH884839|Mus musculus domesticus DNA, BAC clone: B6Ng01-065F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,475,185 - 118,476,299)(118,323,160 - 118,323,636)
sequence
gaattctctgaactgtggtctcagaagtagacacaaagttccagacacag
tgaaagcaatgtggaggagagaagaatgcctgactatgccctgcttatga
caacaatataactcctcttcacaggctggatagttttcctttgagatata
tgttaattttctttccttttctttctttttctcctctctctctctctctc
tctttctctctctctctccctacccctctctcctctcacccccctctctt
ttgagactgcccctgctggccttgagacggccattctcctgcctcagctt
cccaagtgctgagatcatagaggcttgctgttgttacaggcaacctaaag
tttgtcttatttcaaatggtttactccttgagaaaaatccactgctgacc
ccttattctgccttattcctgtggaggaagttctaggtgcttcttggaaa
gagttaacttgaggcctctcagtccttaggcagcagttggtcctctctgt
tgtgggttttcatctatagtcctgaccaactgcagaatgaaaatatttga
caaactttgtgcctgtcttgaagacatacagagctcaatactgtcatcat
ttccccgaacagcatagtttaacaagtctgtacacagcgtggatgcagca
gtgggtgggtgagctggcagtgtgtgaggatggagctggtgagctgttca
gaaagtcctagaggatagatggtggccctgtgtccagccagaacctgtaa
atgtggcatctctcagaaacagcacctgtgccaggtgtgaggacacatgc
ttgaaatcccagcatttgggaggtcgggaattgggagttaaggttagtct
tggctgcacagtgagttttagtttagatgttgtcccagcacttgggatgg
actatgaggcattgcctggggattggatcaggagaggagtctagacttga
agcaagaaggcgtgaagtggtagagatgactcagactgcaagagtctgga
tgcctaagctggagagtctaagaataaccccactcttgtgtgcccaataa
tcagtcctctcgcctgggattctgggcatggggccgacatgaatccgctg
t
ctctcaggatttcagcttggtgatattgtgtaaattgtagaagaaggagc
aagtggatgtgtcgtggcttgtgtggttatttacaataggtgttgggtaa
tcagcactgcacacctccattcagtgaccctccccaccgagggctcaggg
gacatgggaacgagtgtggacacagaggcctcccaatcccaagctcatct
ctcagtggaacatcattgctacacacagctggggaaaccaagtccttgcc
actgaggaaggattactcctgacagcgagtgcagggcttgggagcaggag
gcagtgtcagagtcagcaggagtgtagaaacctccaccagggagactcag
aatttgtcacattctaatcaatgatgtttgcctgctgtttcctgtacccc
tttgtgtgtattgaagctgagtatctgtgatcccagaacgtctgtgggag
gagggtatgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118475185_118476299
seq2: B6Ng01-065F08.b_44_1144 (reverse)

seq1  ACAGCAGGATTCACTGTCGGCCCCATGGCCAGAAGTCCCATGGCGTAGTG  50
      ||||| ||||||| ||||||||||||| |||||| ||||| |||| || |
seq2  ACAGC-GGATTCA-TGTCGGCCCCATGCCCAGAA-TCCCA-GGCG-AGAG  45

seq1  GACTGGATTCTTGTGCCCACACTGAGTGGGGTTCTTCTTGAGACTCTCCA  100
      |||| |||| ||| || ||||  |||||||||| ||||| ||||||||||
seq2  GACT-GATTATTGGGCACACA-AGAGTGGGGTTATTCTT-AGACTCTCCA  92

seq1  GCTTAGGCATCACGACTCTTTGCAGTTCTGACGTCATCTCTACCACTTCA  150
      |||||||||||  ||||| |||||| ||||| ||||||||||||||||||
seq2  GCTTAGGCATCCAGACTC-TTGCAG-TCTGA-GTCATCTCTACCACTTCA  139

seq1  CGGCCTTCTTGCTTCATGTCTAGACTCCTCTCCTGATCCAATCCCCAGGC  200
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  C-GCCTTCTTGCTTCAAGTCTAGACTCCTCTCCTGATCCAATCCCCAGGC  188

seq1  AATGGCCTCATAGTCCATCCCAAGTGCTGGGACAACATCTTAACTTAAAC  250
      ||| |||||||||||||||||||||||||||||||||||| |||| ||||
seq2  AAT-GCCTCATAGTCCATCCCAAGTGCTGGGACAACATCTAAACTAAAAC  237

seq1  TCACTGTGCAGCCAAGACTAACCTTGAACTCCCAATTCCCGACCTCCCAA  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCACTGTGCAGCCAAGACTAACCTT-AACTCCCAATTCCCGACCTCCCAA  286

seq1  ATGCTGGGATTTCAAGCATGTGTCCTCACACCTGGCACAGGTGCTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGATTTCAAGCATGTGTCCTCACACCTGGCACAGGTGCTGTTTC  336

seq1  TGAGAGATGCCACATTTACAGGTTCTGGCTGGACACAGGGCCACCATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATGCCACATTTACAGGTTCTGGCTGGACACAGGGCCACCATCTA  386

seq1  TCCTCTAGGACTTTCTGAACAGCTCACCAGCTCCATCCTCACACACTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTAGGACTTTCTGAACAGCTCACCAGCTCCATCCTCACACACTGCC  436

seq1  AGCTCACCCACCCACTGCTGCATCCACGCTGTGTACAGACTTGTTAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCACCCACCCACTGCTGCATCCACGCTGTGTACAGACTTGTTAAACT  486

seq1  ATGCTGTTCGGGGAAATGATGACAGTATTGAGCTCTGTATGTCTTCAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTCGGGGAAATGATGACAGTATTGAGCTCTGTATGTCTTCAAGA  536

seq1  CAGGCACAAAGTTTGTCAAATATTTTCATTCTGCAGTTGGTCAGGACTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACAAAGTTTGTCAAATATTTTCATTCTGCAGTTGGTCAGGACTAT  586

seq1  AGATGAAAACCCACAACAGAGAGGACCAACTGCTGCCTAAGGACTGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAACCCACAACAGAGAGGACCAACTGCTGCCTAAGGACTGAGAG  636

seq1  GCCTCAAGTTAACTCTTTCCAAGAAGCACCTAGAACTTCCTCCACAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAGTTAACTCTTTCCAAGAAGCACCTAGAACTTCCTCCACAGGAA  686

seq1  TAAGGCAGAATAAGGGGTCAGCAGTGGATTTTTCTCAAGGAGTAAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCAGAATAAGGGGTCAGCAGTGGATTTTTCTCAAGGAGTAAACCAT  736

seq1  TTGAAATAAGACAAACTTTAGGTTGCCTGTAACAACAGCAAGCCTCTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAGACAAACTTTAGGTTGCCTGTAACAACAGCAAGCCTCTATG  786

seq1  ATCTCAGCACTTGGGAAGCTGAGGCAGGAGAATGGCCGTCTCAAGGCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGCACTTGGGAAGCTGAGGCAGGAGAATGGCCGTCTCAAGGCCAG  836

seq1  CAGGGGCAGTCTCAAAAGAGAGGGGGGTGAGAGGAGAGAGGGGTAGGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGCAGTCTCAAAAGAGAGGGGGGTGAGAGGAGAGAGGGGTAGGGAG  886

seq1  AGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGGAGAAAAAGAAAGAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGGAGAAAAAGAAAGAAAAG  936

seq1  GAAAGAAAATTAACATATATCTCAAAGGAAAACTATCCAGCCTGTGAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAATTAACATATATCTCAAAGGAAAACTATCCAGCCTGTGAAGA  986

seq1  GGAGTTATATTGTTGTCATAAGCAGGGCATAGTCAGGCATTCTTCTCTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTATATTGTTGTCATAAGCAGGGCATAGTCAGGCATTCTTCTCTCC  1036

seq1  TCCACATTGCTTTCACTGTGTCTGGAACTTTGTGTCTACTTCTGAGACCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTGCTTTCACTGTGTCTGGAACTTTGTGTCTACTTCTGAGACCA  1086

seq1  CAGTTCAGAGAATTC  1115
      |||||||||||||||
seq2  CAGTTCAGAGAATTC  1101

seq1: chr12_118323160_118323636
seq2: B6Ng01-065F08.g_70_546

seq1  GAATTCCTCTCAGGATTTCAGCTTGGTGATATTGTGTAAATTGTAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCAGGATTTCAGCTTGGTGATATTGTGTAAATTGTAGAAGA  50

seq1  AGGAGCAAGTGGATGTGTCGTGGCTTGTGTGGTTATTTACAATAGGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAAGTGGATGTGTCGTGGCTTGTGTGGTTATTTACAATAGGTGTT  100

seq1  GGGTAATCAGCACTGCACACCTCCATTCAGTGACCCTCCCCACCGAGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATCAGCACTGCACACCTCCATTCAGTGACCCTCCCCACCGAGGGC  150

seq1  TCAGGGGACATGGGAACGAGTGTGGACACAGAGGCCTCCCAATCCCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGACATGGGAACGAGTGTGGACACAGAGGCCTCCCAATCCCAAGC  200

seq1  TCATCTCTCAGTGGAACATCATTGCTACACACAGCTGGGGAAACCAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTCAGTGGAACATCATTGCTACACACAGCTGGGGAAACCAAGTC  250

seq1  CTTGCCACTGAGGAAGGATTACTCCTGACAGCGAGTGCAGGGCTTGGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCACTGAGGAAGGATTACTCCTGACAGCGAGTGCAGGGCTTGGGAG  300

seq1  CAGGAGGCAGTGTCAGAGTCAGCAGGAGTGTAGAAACCTCCACCAGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCAGTGTCAGAGTCAGCAGGAGTGTAGAAACCTCCACCAGGGAG  350

seq1  ACTCAGAATTTGTCACATTCTAATCAATGATGTTTGCCTGCTGTTTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAATTTGTCACATTCTAATCAATGATGTTTGCCTGCTGTTTCCTG  400

seq1  TACCCCTTTGTGTGTATTGAAGCTGAGTATCTGTGATCCCAGAACGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCTTTGTGTGTATTGAAGCTGAGTATCTGTGATCCCAGAACGTCTG  450

seq1  TGGGAGGAGGGTATGTGTGTGTGTGTG  477
      |||||||||||||||||||||||||||
seq2  TGGGAGGAGGGTATGTGTGTGTGTGTG  477