BAC Information

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BAC

Clone NameB6Ng01-065G13
Chromosome3 (Build37)12 (Build37)
Map Location 41,058,957 - 41,059,73758,387,819 - 58,388,938
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065G13.bB6Ng01-065G13.g
ACCDH884892DH884893
length8341,097
definitionDH884892|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G13, 5' end.DH884893|Mus musculus domesticus DNA, BAC clone: B6Ng01-065G13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,957 - 41,059,737)(58,387,819 - 58,388,938)
sequence
gaattctttgtttagctctgtaccccattttttaatggatttatttgaat
ttctggagtccagcttcttgagctctttgtatatattggatattagtccc
ctctcagatttaggattggtaaaaatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccctacagaagctttgcaatttta
tgaggtcccatttgccaattcttgatcttacagcacaggccattgctgtt
ctgtttaggaatttttcccctgtgcccatatcttcgaggctttccccact
ttctcctctataaatttcagtgtctctggttttatctttgatccacttag
acttgagctttgtacaaggagaaaagaacagatcaattcgcattcttcta
catgataaccaccagttgagccagcaccatttgttgaaaatgctgtcttt
tttccactggatggttttagctcccttgtcaaagatcaagtgaccatagg
tgtgtgggttcatttctgggtcttcaattctattccattgatctacctgt
ctgtcgctgtaccagtaccatgcagtttttatcacaattgctctgtagta
cagcttgaggtcaggaatggtgattcccccagaggttcttttattgttga
gaatagtttttgctatccaaggttttttattattccagatgaatttgcaa
atttgccctttctaactcagtgaagaattgagttgaaattttgatgggga
ttgcattgaatctgtttgattgctttctgcactgaagctttattcttctg
ttacctatactgaaaacagaaagggagacagcgc
gaattccaagtatgatttattaacattttataagtagacaactaaggaag
catactagaaaaacatctatgatgcttttagacaacattgatcatcatga
atagaacctcaattttgtgaagtaattgattatgttgcagaaggagaaag
aaaacagttatttaattaggggagatatctgtttccctccagtgagatag
ctagtagaaaaattatatcccttggacatcatgattatatacttctttac
actgcaggtttgatagatagctaaccattctgttctgagctgtagaaatt
aaattatatttaataaatggctttgttgtaagcaatgatgtgcttttcct
aaataagtaagtgtgactttatttgctgcctgagtttgaaagaagataca
ttgcacttgcattttattaatttcaataaaatggaatgatagaaacaccc
cagatttgggagtgagaaaagcagagttcctgtacgtcttatttacttac
ttagcacacaccaagactttggtgcaagttttgtaatgtttaccgtacat
gtgggttaatgaagaggttgttctttattgctattaagaatatcaaattt
ggaatatcaatttccaaaacaaaagtgagattatttaatggggtagtaac
atatatgttcagccagggctaccgagaaaccctgtctcgaaaaaccaaaa
aaaaaaaaaaaaatatgttatgtatgtgataaatatcattttcacttaag
tgatgaaagtggttagaaatctagaaacaatataaaagattgttgacata
ttttatgaagcctttaagtaaattgtgatatattccttgcctgcaataat
caatttataaaagtcagaatatcataaacaatatcatgtatgatagtaat
ttataattttatatggtatttatgtcaggtattcattaagaacttggatt
tttcaagatatataacattgagactaaaatcttatagcatattgaatatt
taatttctatagaatatagcttatagaattaaaacaagatactgatctga
ttggaataaaccttgaatatagtccccatggctaaggcttaaaacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058957_41059737
seq2: B6Ng01-065G13.b_49_823 (reverse)

seq1  AAAGCAATC-TACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAAT  49
      |||||||||  ||||||||||||||||||||||||||||| |||||||||
seq2  AAAGCAATCAAACAGATTCAATGCAATCCCCATCAAAATTTCAACTCAAT  50

seq1  TCTTCAACGAATTTGAAAGAGC-AATCTGCAAATTCATCTGGAATAACAA  98
      ||||||  || || ||||| || ||| |||||||||||||||||||| ||
seq2  TCTTCACTGAGTTAGAAAGGGCAAATTTGCAAATTCATCTGGAATAATAA  100

seq1  AAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAACAGAACCTCTGGTG  148
      ||||||| |||||||||||||| |||||||  |||| ||||||||||| |
seq2  AAAACCTTGGATAGCAAAAACTATTCTCAACAATAAAAGAACCTCTGGGG  150

seq1  GAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAA  198
      |||||||||| |||||||| ||||| ||||||||||||||||||||||||
seq2  GAATCACCATTCCTGACCTCAAGCTGTACTACAGAGCAATTGTGATAAAA  200

seq1  ACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAATGGAATAGAAT  248
      ||||||||||||||||| || |||||||| | ||| ||||||||||||||
seq2  ACTGCATGGTACTGGTACAGCGACAGACAGGTAGATCAATGGAATAGAAT  250

seq1  TGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGATCTTCGACA  298
      ||||||| |||||| ||| |||||||||||||||||||||||||| ||||
seq2  TGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTTGACA  300

seq1  AGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCAACAAATGG  350

seq1  TGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATTGATCCACT  398
      ||||||| |||||||| |||||||||||||||||||||||||||||   |
seq2  TGCTGGCTCAACTGGTGGTTATCATGTAGAAGAATGCGAATTGATCTGTT  400

seq1  CCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACGCCACA  448
      | | ||||||||||| ||| |||| ||||||||||||||        | |
seq2  CTTTTCTCCTTGTACAAAGCTCAAGTCTAAGTGGATCAA--------AGA  442

seq1  TAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTT  498
      |||||||||||||||||||| |||||||||||||||||||| ||||||| 
seq2  TAAAACCAGAGACACTGAAATTTATAGAGGAGAAAGTGGGG-AAAGCCTC  491

seq1  GAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCAATGGCTTG  548
      |||||||||| ||||||||||||||||||  | |||||||||||||| ||
seq2  GAAGATATGGGCACAGGGGAAAAATTCCTAAACAGAACAGCAATGGCCTG  541

seq1  TGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACTGCAAAGCT  598
      |||||||||||  ||||| | ||||||||||||||| ||| |||||||||
seq2  TGCTGTAAGATCAAGAATTGGCAAATGGGACCTCATAAAATTGCAAAGCT  591

seq1  TCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CACCAACAGAT  647
      |||| | ||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTGTAGGGCAAAAGACACCGTCAATAAGACAAAAAGGCCACCAACAGAT  641

seq1  TGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAA  697
      ||||||||||| |||||| |||||||||| || |||||||||||||||||
seq2  TGGGAAAGGATTTTTACCAATCCTAAATCTGAGAGGGGACTAATATCCAA  691

seq1  TATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAATAACCCCA  747
      ||||||  |||| ||||||||| |||| |||||||| ||||||||  |||
seq2  TATATACAAAGAGCTCAAGAAGCTGGACTCCAGAAATTCAAATAAATCCA  741

seq1  TTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  781
      |||||||||||||  |||||||||||||||||||
seq2  TTAAAAAATGGGGTACAGAGCTAAACAAAGAATT  775

seq1: chr12_58387819_58388938
seq2: B6Ng01-065G13.g_68_1164

seq1  GAATTCCAAGTATGATTTATTAACATTTTATAAGTAGACAACTAAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTATGATTTATTAACATTTTATAAGTAGACAACTAAGGAAG  50

seq1  CATACTAGAAAAACATCTATGATGCTTTTAGACAACATTGATCATCATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAGAAAAACATCTATGATGCTTTTAGACAACATTGATCATCATGA  100

seq1  ATAGAACCTCAATTTTGTGAAGTAATTGATTATGTTGCAGAAGGAGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACCTCAATTTTGTGAAGTAATTGATTATGTTGCAGAAGGAGAAAG  150

seq1  AAAACAGTTATTTAATTAGGGGAGATATCTGTTTCCCTCCAGTGAGATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGTTATTTAATTAGGGGAGATATCTGTTTCCCTCCAGTGAGATAG  200

seq1  CTAGTAGAAAAATTATATCCCTTGGACATCATGATTATATACTTCTTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAGAAAAATTATATCCCTTGGACATCATGATTATATACTTCTTTAC  250

seq1  ACTGCAGGTTTGATAGATAGCTAACCATTCTGTTCTGAGCTGTAGAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGTTTGATAGATAGCTAACCATTCTGTTCTGAGCTGTAGAAATT  300

seq1  AAATTATATTTAATAAATGGCTTTGTTGTAAGCAATGATGTGCTTTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATATTTAATAAATGGCTTTGTTGTAAGCAATGATGTGCTTTTCCT  350

seq1  AAATAAGTAAGTGTGACTTTATTTGCTGCCTGAGTTTGAAAGAAGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTAAGTGTGACTTTATTTGCTGCCTGAGTTTGAAAGAAGATACA  400

seq1  TTGCACTTGCATTTTATTAATTTCAATAAAATGGAATGATAGAAACACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTGCATTTTATTAATTTCAATAAAATGGAATGATAGAAACACCC  450

seq1  CAGATTTGGGAGTGAGAAAAGCAGAGTTCCTGTACGTCTTATTTACTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTGGGAGTGAGAAAAGCAGAGTTCCTGTACGTCTTATTTACTTAC  500

seq1  TTAGCACACACCAAGACTTTGGTGCAAGTTTTGTAATGTTTACCGTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACACACCAAGACTTTGGTGCAAGTTTTGTAATGTTTACCGTACAT  550

seq1  GTGGGTTAATGAAGAGGTTGTTCTTTATTGCTATTAAGAATATCAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTAATGAAGAGGTTGTTCTTTATTGCTATTAAGAATATCAAATTT  600

seq1  GGAATATCAATTTCCAAAACAAAAGTGAGATTATTTAAT-GGGTAGTAAC  649
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGAATATCAATTTCCAAAACAAAAGTGAGATTATTTAATGGGGTAGTAAC  650

seq1  ATATATGTTCAGCCAGGGCTACCGAGAAACCCTGTCTCGAAAAACC-AAA  698
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATATATGTTCAGCCAGGGCTACCGAGAAACCCTGTCTCGAAAAACCAAAA  700

seq1  AAAAAAAAAAAAATATGTTATGTATGTGATAAATATCATTTTCACTTAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAATATGTTATGTATGTGATAAATATCATTTTCACTTAAG  750

seq1  TGATGAAAGTGGTTAGAAATCTAGAAACAATATAAAAGATTGTTGACATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAAGTGGTTAGAAATCTAGAAACAATATAAAAGATTGTTGACATA  800

seq1  TTTTATGAAGCCTTTAAGTAAATTGTGATATATTCCTTGCCTGCAAATAA  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTTATGAAGCCTTTAAGTAAATTGTGATATATTCCTTGCCTGC-AATAA  849

seq1  TCAATTTATTAAAAGTTCAGAAATATCATAAACAATATCATGTATGATTA  898
      |||||||| |||||| |||| |||||||||||||||||||||||||| ||
seq2  TCAATTTA-TAAAAG-TCAG-AATATCATAAACAATATCATGTATGA-TA  895

seq1  GTAATTTAATAATTTTATATTGGTATTTTATGTTCAGTATATCATTAGAA  948
      ||||||| ||||||||||| ||||| |||||||   |||| ||||||  |
seq2  GTAATTT-ATAATTTTATA-TGGTA-TTTATGTCAGGTAT-TCATTAAGA  941

seq1  ACTTGATTTTTTCAAAGAATTATATACAATATAGACTAAAAATTCATATA  998
      |||||  |||||| ||||  ||||||  ||  |||||||||  || ||||
seq2  ACTTGGATTTTTC-AAGA--TATATAACATTGAGACTAAAA--TCTTATA  986

seq1  GCATATATGAATATAT-ATTTATATAGAATATAGCTTATAGAATATAGAA  1047
      |||||| ||||||| | |||| |||||||||||||||||||||| || ||
seq2  GCATAT-TGAATATTTAATTTCTATAGAATATAGCTTATAGAAT-TAAAA  1034

seq1  TCAGTAATAACTGATTCTGATTGCAATAAAAACCTTTAGACTAGTACCCC  1097
        ||  || ||||| |||||||| |||  ||||||| |   |||| ||||
seq2  CAAG--AT-ACTGA-TCTGATTGGAAT--AAACCTTGAATATAGT-CCCC  1077

seq1  ATTGGCATAAGGCTTAAATACAT  1120
      | |||| ||||||||||| ||||
seq2  A-TGGC-TAAGGCTTAAA-ACAT  1097