BAC Information

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BAC

Clone NameB6Ng01-065L22
Chromosome12 (Build37)
Map Location 87,760,657 - 87,855,039
singlet/doubletdoublet
Overlap geneEsrrb
Upstream geneLOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik, LOC100042112
Downstream geneLOC667191, Vash1, Angel1, EG627607, LOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065L22.bB6Ng01-065L22.g
ACCDH885131DH885132
length4291,107
definitionDH885131|Mus musculus domesticus DNA, BAC clone: B6Ng01-065L22, 5' end.DH885132|Mus musculus domesticus DNA, BAC clone: B6Ng01-065L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,760,657 - 87,761,091)(87,853,915 - 87,855,039)
sequence
tccagtgaacatcatgcgtgcgcgcgcagtcactcctctcatgagacttc
caatctatggagaaggggcggtacctctcacatcaataaagtcgtgattg
ctaactgtgttaagcaacttgaaacagtgtgactggcagaagatgtgggt
gctgtctgggagggaggggggagtctattagatggcagttgtagtgatgg
gctgcggaggggtacagagtcacctacagcattctttcatgtgtccatgg
ccatacaggccaaagagcaggcttcattccccactgcgacaggagtcatt
aactgtgcattttcaaagccctgccaagccctgagtgtgctcagggaaag
gaagaattcagagaagcccgtcaatgaggccttcacaagagatgggagtc
ttgtagaaaccaactcaaggacaatacct
gaattcatggaaaagacttacataataagagttgagtcaatattgacagt
tattatcaccatgcccattgggtctagctaggtctttcccagcatgggga
gacaacactgattaataaggtgcatttgtaattgaaggagctgctgaatt
aatagcaggatttgggggtggcaagatgggtgtctccaacatactgcaag
ctccaggaaagctctctgctttaataccagatccttgcagccaggaaggt
ggattcagttgcccatggcctgggccaaggctactgggagggcaaggctc
caaagacagcctgtgcgtactctggctgcctggactgtcgtcactctgcc
ttgagaagactcagcagatgtgctctggacactactactcaggaacgcga
cctcctccctccagagaggggaaatgggagctaagagggtatactggctg
gttttgtgttatcagtttgacacaagctagagttatcagagaggaagtag
tctcttgaggaaatgcctccatgagatccagctgtaaagctttttgtcaa
ttagtgactgatgggggagggcccagcccacccatggtgtgtggtgccat
ccctgggcaagtggtcctgggctctataagaaggctgagcaagccaatag
gagcaagccaataagcagcatcccttcatgacctctgtatcagctctgcc
tccagatctctgccccacttgagttctgtcctgacttcctccaacaatgt
accatgatttgtaagtgtaagccaaataaaccctttcctcctcacttgct
tttcggttgtggtgttttgtcacagcaatagagactcccaactaagacag
tagtctctagaatcaggacactgctttgtccaatgtgctatgaaagattg
cctgggcttgaccctgacgcccaaatactagctggtgggtggaacttgat
agggcatgtaacttctgcaactggactcttgtcactggaatgaacgaatg
agcggttccaaaagcaggtgtgctttaaatggctgctggcctatacggga
agacaatttagaaaactagctctccttattataggtgacaaacaaagcta
tgtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_87760657_87761091
seq2: B6Ng01-065L22.b_51_485

seq1  GAATTCTCCAGTGAACATCATGCGTGCGCGCGCAGTCACTCCTCTCATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGTGAACATCATGCGTGCGCGCGCAGTCACTCCTCTCATGA  50

seq1  GACTTCCAATCTATGGAGAAGGGGCGGTACCTCTCACATCAATAAAGTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCAATCTATGGAGAAGGGGCGGTACCTCTCACATCAATAAAGTCG  100

seq1  TGATTGCTAACTGTGTTAAGCAACTTGAAACAGTGTGACTGGCAGAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTAACTGTGTTAAGCAACTTGAAACAGTGTGACTGGCAGAAGAT  150

seq1  GTGGGTGCTGTCTGGGAGGGAGGGGGGAGTCTATTAGATGGCAGTTGTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGCTGTCTGGGAGGGAGGGGGGAGTCTATTAGATGGCAGTTGTAG  200

seq1  TGATGGGCTGCGGAGGGGTACAGAGTCACCTACAGCATTCTTTCATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGCTGCGGAGGGGTACAGAGTCACCTACAGCATTCTTTCATGTGT  250

seq1  CCATGGCCATACAGGCCAAAGAGCAGGCTTCATTCCCCACTGCGACAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCCATACAGGCCAAAGAGCAGGCTTCATTCCCCACTGCGACAGGA  300

seq1  GTCATTAACTGTGCATTTTCAAAGCCCTGCCAAGCCCTGAGTGTGCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTAACTGTGCATTTTCAAAGCCCTGCCAAGCCCTGAGTGTGCTCAG  350

seq1  GGAAAGGAAGAATTCAGAGAAGCCCGTCAATGAGGCCTTCACAAGAGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAGAATTCAGAGAAGCCCGTCAATGAGGCCTTCACAAGAGATG  400

seq1  GGAGTCATGTAGAAACCAACTCAAGGACAATACCT  435
      |||||| ||||||||||||||||||||||||||||
seq2  GGAGTCTTGTAGAAACCAACTCAAGGACAATACCT  435

seq1: chr12_87853915_87855039
seq2: B6Ng01-065L22.g_69_1175 (reverse)

seq1  GCAGACATAGACCTTTGTTTTGTCTCACCATTAATAAGAGGAGCTTATGT  50
      ||||||||||  |||||||   | |||||  |||||||  |||||   ||
seq2  GCAGACATAG--CTTTGTT---TGTCACCTATAATAAGGAGAGCT--AGT  43

seq1  TTTCTATAATTGTCTTCCCGTATAGTGCACAGCCAGCCACTCTAAAGCAC  100
      |||||| |||||||||||||||||| || ||| |||||| | ||||||||
seq2  TTTCTA-AATTGTCTTCCCGTATAG-GC-CAG-CAGCCA-TTTAAAGCAC  88

seq1  ACTCTGCTCTTGGGACCGCTCATCTGTTCATTCCAGTGACAAAGAGGTCC  150
      || ||||| |||| |||||||||  ||||||||||||||| |||| ||||
seq2  AC-CTGCTTTTGGAACCGCTCATTCGTTCATTCCAGTGAC-AAGA-GTCC  135

seq1  AGGTTTGCAGAGGTTACATGCCCTAATCAAGTTCCACCCA-CAGCTAGTA  199
      ||  ||||||| |||||||||||| ||||||||||||||| |||||||||
seq2  AG--TTGCAGAAGTTACATGCCCT-ATCAAGTTCCACCCACCAGCTAGTA  182

seq1  TTTGGGCCGTCAGGGTCAAGCCCAGGCAATCTTTCATAGCACATTGGACA  249
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGG-CGTCAGGGTCAAGCCCAGGCAATCTTTCATAGCACATTGGACA  231

seq1  AAGCAGTGTCCTGATTCTAGAGACTACTGTCTTAGTTGGG-GTCTCTATT  298
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGCAGTGTCCTGATTCTAGAGACTACTGTCTTAGTTGGGAGTCTCTATT  281

seq1  GCTGTGACAAAACACCACAACCGAAAAGCAAGTGGAGGAGGAAAGGGTTT  348
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCTGTGACAAAACACCACAACCGAAAAGCAAGT-GAGGAGGAAAGGGTTT  330

seq1  ATTTGGCTTACACTTACAAATCATGGTACATTGTTGGAGGAAGTCAGGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTTACACTTACAAATCATGGTACATTGTTGGAGGAAGTCAGGAC  380

seq1  AGAACTCAAGTGGGGCAGAGATCTGGAGGCAGAGCTGATACAGAGGTCAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAAGTGGGGCAGAGATCTGGAGGCAGAGCTGATACAGAGGTCAT  430

seq1  GAAGGGATGCTGCTTATTGGCTTGCTCCTATTGGCTTGCTCAGCCTTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGATGCTGCTTATTGGCTTGCTCCTATTGGCTTGCTCAGCCTTCTT  480

seq1  ATAGAGCCCAGGACCACTTGCCCAGGGATGGCACCACACACCATGGGTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGCCCAGGACCACTTGCCCAGGGATGGCACCACACACCATGGGTGG  530

seq1  GCTGGGCCCTCCCCCATCAGTCACTAATTGACAAAAAGCTTTACAGCTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGCCCTCCCCCATCAGTCACTAATTGACAAAAAGCTTTACAGCTGG  580

seq1  ATCTCATGGAGGCATTTCCTCAAGAGACTACTTCCTCTCTGATAACTCTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATGGAGGCATTTCCTCAAGAGACTACTTCCTCTCTGATAACTCTA  630

seq1  GCTTGTGTCAAACTGATAACACAAAACCAGCCAGTATACCCTCTTAGCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGTCAAACTGATAACACAAAACCAGCCAGTATACCCTCTTAGCTC  680

seq1  CCATTTCCCCTCTCTGGAGGGAGGAGGTCGCGTTCCTGAGTAGTAGTGTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCCCCTCTCTGGAGGGAGGAGGTCGCGTTCCTGAGTAGTAGTGTC  730

seq1  CAGAGCACATCTGCTGAGTCTTCTCAAGGCAGAGTGACGACAGTCCAGGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACATCTGCTGAGTCTTCTCAAGGCAGAGTGACGACAGTCCAGGC  780

seq1  AGCCAGAGTACGCACAGGCTGTCTTTGGAGCCTTGCCCTCCCAGTAGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGAGTACGCACAGGCTGTCTTTGGAGCCTTGCCCTCCCAGTAGCCT  830

seq1  TGGCCCAGGCCATGGGCAACTGAATCCACCTTCCTGGCTGCAAGGATCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCAGGCCATGGGCAACTGAATCCACCTTCCTGGCTGCAAGGATCTG  880

seq1  GTATTAAAGCAGAGAGCTTTCCTGGAGCTTGCAGTATGTTGGAGACACCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAAAGCAGAGAGCTTTCCTGGAGCTTGCAGTATGTTGGAGACACCC  930

seq1  ATCTTGCCACCCCCAAATCCTGCTATTAATTCAGCAGCTCCTTCAATTAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCCACCCCCAAATCCTGCTATTAATTCAGCAGCTCCTTCAATTAC  980

seq1  AAATGCACCTTATTAATCAGTGTTGTCTCCCCATGCTGGGAAAGACCTAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACCTTATTAATCAGTGTTGTCTCCCCATGCTGGGAAAGACCTAG  1030

seq1  CTAGACCCAATGGGCATGGTGATAATAACTGTCAATATTGACTCAACTCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCCAATGGGCATGGTGATAATAACTGTCAATATTGACTCAACTCT  1080

seq1  TATTATGTAAGTCTTTTCCATGAATTC  1125
      |||||||||||||||||||||||||||
seq2  TATTATGTAAGTCTTTTCCATGAATTC  1107