BAC Information

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BAC

Clone NameB6Ng01-065N03
Chromosome12 (Build37)
Map Location 58,413,171 - 58,501,453
singlet/doubletdoublet
Overlap genenone
Upstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065N03.bB6Ng01-065N03.g
ACCDH885182DH885183
length1,1191,092
definitionDH885182|Mus musculus domesticus DNA, BAC clone: B6Ng01-065N03, 5' end.DH885183|Mus musculus domesticus DNA, BAC clone: B6Ng01-065N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,500,312 - 58,501,453)(58,413,171 - 58,414,282)
sequence
gaattcacaagcatatctattcactaattaaagaacacttaaagatactg
cctttctgaaaacaaggattagagctggctgaataccccctttcacaacc
cttcctcgaggctctcttgggtcatcacaagcagcttgttcttccagaat
taaatagaaaagcctgctgatcaccagttctgagtgcctcagttaggcat
caggacgattaatagggacagaaactttaaataacatgtaaataaatcat
tccaggacaagtgctgtaataaaaacgcaaacaaagacaaactttttaaa
gcaatattatttatgttgccacttgggttgtatggatgcttgctatagaa
acctttacttaaaaactcgcactacattttatataattgcttctaaagtg
aaattgtaatgcatacataattacaaagtaagacagaggcgggcatagaa
aaagttatgcatttctacaaaagtaactttgaaggagaatatgtaataat
aagattctgaaattacatggaatcacctggaagtgcataatgagaaagca
aagtactaattttgcttaaaaatctctattattctatgacttctcagttc
tacataaagagctaatttctcagcacagtagcaggcagaccagctgtttt
ctgcccaccattggacagccagcacttccttcccattggctacaatactg
cagcagaacccaggcaacagagcggccagccaagcctctctggtttgcgg
aatgaacaggctgcagtaaccactcaagaagccctcactgcaaccatgcc
cagctcctgctagagtagagggcagccctctccgagcctaggagaaggca
gatagacgtgaaacctattctgatgcacagttcctaagctctctctgttt
aaatcacccagcaaggacgtgtcctttctttctacgaaatacaaaatcat
atatacgaagcaaacatctggctgcatacattcccaaaagctcctttaaa
aaaaaaaaaaattgggtctaacctcgaacaggaccaggatctaagtgctt
ctcataactatgtcattattcagcctaagatttactacatgctttacgtg
ctgagagaaaccacctgca
gaattcctctccatgtgtttaattaaggagtatttgtttgttgtgcctat
tgaggatgcattcattttgactcatttaaattacacatgtatataatatt
attttaaagcattattgatgacctgtagatattatgtgtattttagagaa
aaatagctgaaacatcatctatttacacttttatattatctcttttcaac
tgaaaacagtgcctaaatactaaacatttaaggattgtgtgtctgtagtt
tgacggtaagacattctgtgtcctgattgcatccactcatttctttgatg
tttgtgatgtggtggtgacttttaaacacattgaatatctttccattcta
acatttctgtggcctggccctgcacgtaccgtctctttgtgttactatta
gtactattatacagatactgggaatattttgtgtaacagtattttagtag
tattttataatgtctaaccactgatatttcttcaaaggccttatttttta
tttcttaaaagctcacgatagagcctctgctttatgtgttagtttttttc
cttcttgaatgtcatccattaaagattagctgtggccggttgaagcatgg
agagattatgaatgacagaacagctcctgtagaataataatcagtttttg
gtatttaatgctgtttgacttttgcagacacatttcttattaacctttgg
tacaaagagaaatccaggttcctgatatctcatggaggagatgaatttga
gatcctcttccattaaactgaaataaagacatattggattttagccaaag
aactccttagttttaagtctcatgtttataagtctatcatctatctatct
atctatctatctatctatctatctatctatctctattatctatcttagtg
tattttaacatataatttaatggttatatatcttgagtacttacttgttt
tgacagtgcattactttcagtgccttttttctttaaataaaattctttct
gacctccaatttcaatattttacacataaagttagttattcttatatgag
agattaatttgcttttcagaagcaagagtttcatgtgcttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58500312_58501453
seq2: B6Ng01-065N03.b_46_1164 (reverse)

seq1  TGCAGGTGG-TTCTCTCAGCACAGTAAAGCATGTAGTAAAATTCTTAGGC  49
      ||||||||| |||||||||||| |||||||||||||||||  ||||||||
seq2  TGCAGGTGGTTTCTCTCAGCAC-GTAAAGCATGTAGTAAA--TCTTAGGC  47

seq1  TGAAATACATTGACATAGTTATGAGAAGCACTTAGGAATCCCTGGGTCCT  99
      |||   | | |||||||||||||||||||||||||  ||||   ||||||
seq2  TGA---ATAATGACATAGTTATGAGAAGCACTTAG--ATCC--TGGTCCT  90

seq1  GTTCGAGGTTAGACCCAATTTTTTTTTTTTTTTTAAAGGAAGCTTTTTGG  149
      ||||||||||||||||||  ||||||||||||||||||| |||||||  |
seq2  GTTCGAGGTTAGACCCAA--TTTTTTTTTTTTTTAAAGG-AGCTTTT--G  135

seq1  GGAATTGTATTGCAGCCAGATGTTTGCTTCGTATATATTGATTTTTGTAT  199
      |||| |||| ||||||||||||||||||||||||||| ||| ||||||||
seq2  GGAA-TGTA-TGCAGCCAGATGTTTGCTTCGTATATA-TGA-TTTTGTAT  181

seq1  TTCGTAGAAAAGAAAGGACACGTCCTTGCTGGGTGATTTTAAACAGAAGA  249
      ||||||| |||||||||||||||||||||||||||| ||||||||| |||
seq2  TTCGTAG-AAAGAAAGGACACGTCCTTGCTGGGTGA-TTTAAACAG-AGA  228

seq1  GAGCTTAGGAACTGTGCCTTCAGAATAGGTTTCACGTCTATCTGCCCTTC  299
      |||||||||||||||| | ||||||||||||||||||||||||| |||||
seq2  GAGCTTAGGAACTGTG-CATCAGAATAGGTTTCACGTCTATCTG-CCTTC  276

seq1  TCCTAGGCTCGGAGAGGGCTGCCCTCTACTCTAGCAGGAGCTGGGCATGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGCTCGGAGAGGGCTGCCCTCTACTCTAGCAGGAGCTGGGCATGG  326

seq1  TTGCAGTGAGGGCTTCTTGAGTGGTTACTGCAGCCTGTTCATTCCGCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTGAGGGCTTCTTGAGTGGTTACTGCAGCCTGTTCATTCCGCAAA  376

seq1  CCAGAGAGGCTTGGCTGGCCGCTCTGTTGCCTGGGTTCTGCTGCAGTATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGGCTTGGCTGGCCGCTCTGTTGCCTGGGTTCTGCTGCAGTATT  426

seq1  GTAGCCAATGGGAAGGAAGTGCTGGCTGTCCAATGGTGGGCAGAAAACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCAATGGGAAGGAAGTGCTGGCTGTCCAATGGTGGGCAGAAAACAG  476

seq1  CTGGTCTGCCTGCTACTGTGCTGAGAAATTAGCTCTTTATGTAGAACTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGCCTGCTACTGTGCTGAGAAATTAGCTCTTTATGTAGAACTGA  526

seq1  GAAGTCATAGAATAATAGAGATTTTTAAGCAAAATTAGTACTTTGCTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATAGAATAATAGAGATTTTTAAGCAAAATTAGTACTTTGCTTTC  576

seq1  TCATTATGCACTTCCAGGTGATTCCATGTAATTTCAGAATCTTATTATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATGCACTTCCAGGTGATTCCATGTAATTTCAGAATCTTATTATTA  626

seq1  CATATTCTCCTTCAAAGTTACTTTTGTAGAAATGCATAACTTTTTCTATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCTCCTTCAAAGTTACTTTTGTAGAAATGCATAACTTTTTCTATG  676

seq1  CCCGCCTCTGTCTTACTTTGTAATTATGTATGCATTACAATTTCACTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTCTGTCTTACTTTGTAATTATGTATGCATTACAATTTCACTTTA  726

seq1  GAAGCAATTATATAAAATGTAGTGCGAGTTTTTAAGTAAAGGTTTCTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAATTATATAAAATGTAGTGCGAGTTTTTAAGTAAAGGTTTCTATA  776

seq1  GCAAGCATCCATACAACCCAAGTGGCAACATAAATAATATTGCTTTAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATCCATACAACCCAAGTGGCAACATAAATAATATTGCTTTAAAA  826

seq1  AGTTTGTCTTTGTTTGCGTTTTTATTACAGCACTTGTCCTGGAATGATTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTCTTTGTTTGCGTTTTTATTACAGCACTTGTCCTGGAATGATTT  876

seq1  ATTTACATGTTATTTAAAGTTTCTGTCCCTATTAATCGTCCTGATGCCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATGTTATTTAAAGTTTCTGTCCCTATTAATCGTCCTGATGCCTA  926

seq1  ACTGAGGCACTCAGAACTGGTGATCAGCAGGCTTTTCTATTTAATTCTGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCACTCAGAACTGGTGATCAGCAGGCTTTTCTATTTAATTCTGG  976

seq1  AAGAACAAGCTGCTTGTGATGACCCAAGAGAGCCTCGAGGAAGGGTTGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAAGCTGCTTGTGATGACCCAAGAGAGCCTCGAGGAAGGGTTGTG  1026

seq1  AAAGGGGGTATTCAGCCAGCTCTAATCCTTGTTTTCAGAAAGGCAGTATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGTATTCAGCCAGCTCTAATCCTTGTTTTCAGAAAGGCAGTATC  1076

seq1  TTTAAGTGTTCTTTAATTAGTGAATAGATATGCTTGTGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTGTTCTTTAATTAGTGAATAGATATGCTTGTGAATTC  1119

seq1: chr12_58413171_58414282
seq2: B6Ng01-065N03.g_69_1160

seq1  GAATTCCTCTCCATGTGTTTAATTAAGGAGTATTTGTTTGTTGTGCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCCATGTGTTTAATTAAGGAGTATTTGTTTGTTGTGCCTAT  50

seq1  TGAGGATGCATTCATTTTGACTCATTTAAATTACACATGTATATAATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGCATTCATTTTGACTCATTTAAATTACACATGTATATAATATT  100

seq1  ATTTTAAAGCATTATTGATGACCTGTAGATATTATGTGTATTTTAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGCATTATTGATGACCTGTAGATATTATGTGTATTTTAGAGAA  150

seq1  AAATAGCTGAAACATCATCTATTTACACTTTTATATTATCTCTTTTCAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTGAAACATCATCTATTTACACTTTTATATTATCTCTTTTCAAC  200

seq1  TGAAAACAGTGCCTAAATACTAAACATTTAAGGATTGTGTGTCTGTAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAGTGCCTAAATACTAAACATTTAAGGATTGTGTGTCTGTAGTT  250

seq1  TGACGGTAAGACATTCTGTGTCCTGATTGCATCCACTCATTTCTTTGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGTAAGACATTCTGTGTCCTGATTGCATCCACTCATTTCTTTGATG  300

seq1  TTTGTGATGTGGTGGTGACTTTTAAACACATTGAATATCTTTCCATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGATGTGGTGGTGACTTTTAAACACATTGAATATCTTTCCATTCTA  350

seq1  ACATTTCTGTGGCCTGGCCCTGCACGTACCGTCTCTTTGTGTTACTATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTGTGGCCTGGCCCTGCACGTACCGTCTCTTTGTGTTACTATTA  400

seq1  GTACTATTATACAGATACTGGGAATATTTTGTGTAACAGTATTTTAGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTATTATACAGATACTGGGAATATTTTGTGTAACAGTATTTTAGTAG  450

seq1  TATTTTATAATGTCTAACCACTGATATTTCTTCAAAGGCCTTATTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATAATGTCTAACCACTGATATTTCTTCAAAGGCCTTATTTTTTA  500

seq1  TTTCTTAAAAGCTCACGATAGAGCCTCTGCTTTATGTGTTAGTTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAAAAGCTCACGATAGAGCCTCTGCTTTATGTGTTAGTTTTTTTC  550

seq1  CTTCTTGAATGTCATCCATTAAAGATTAGCTGTGGCCGGTTGAAGCATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGAATGTCATCCATTAAAGATTAGCTGTGGCCGGTTGAAGCATGG  600

seq1  AGAGATTATGAATGACAGAACAGCTCCTGTAGAATAATAATCAGTTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTATGAATGACAGAACAGCTCCTGTAGAATAATAATCAGTTTTTG  650

seq1  GTATTTAATGCTGTTTGACTTTTGCAGACACATTTCTTATTAACCTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTAATGCTGTTTGACTTTTGCAGACACATTTCTTATTAACCTTTGG  700

seq1  TACAAAGAGAAATCCAGGTTCCTGATATCTCATGGAGGAGATGAATTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGAGAAATCCAGGTTCCTGATATCTCATGGAGGAGATGAATTTGA  750

seq1  GATCCTCTTCCAATTAAACTGAAATAAAGACAATATTGGATTTTAGCCAA  800
      ||||||||||| ||||||||||||||||||| |||||||||||||||| |
seq2  GATCCTCTTCC-ATTAAACTGAAATAAAGAC-ATATTGGATTTTAGCC-A  797

seq1  AAGAACTCCTTAGTTTTTAAGTCTCATGTTTATAAGTCTATCATCTATCT  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCCTTAG-TTTTAAGTCTCATGTTTATAAGTCTATCATCTATCT  846

seq1  ATCTATCTATCTATCTATCTATCTATCTATCTATCTCTATTATCTATCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCTATCTATCTATCTATCTATCTATCTATCTCTATTATCTATCTT  896

seq1  AGTGTATTTTAACATATAATTTAATGGTTATATATCTTGAGTAACTTACT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTGTATTTTAACATATAATTTAATGGTTATATATCTTGAGT-ACTTACT  945

seq1  TGTTTTGACAGTGCAATTACTTTCAGTGCCTTTTTTCTTTAAATATACAT  1000
      |||||||||||||| |||||||||||||||||||||||||||||| | ||
seq2  TGTTTTGACAGTGC-ATTACTTTCAGTGCCTTTTTTCTTTAAATA-AAAT  993

seq1  TCTTTTCTGAACACTCCCATTTCAATTATTTTACACATAAAGTTAGTTCA  1050
      || |||||||   |||| ||||||| |||||||||||||||||||||| |
seq2  TC-TTTCTGA--CCTCCAATTTCAA-TATTTTACACATAAAGTTAGTT-A  1038

seq1  TTCTTATAGTAGAGAATGTAAATTTGCTTTTCTCAAGAGCAAAGAAGTTT  1100
      ||||||||  |||||   | ||||||||||  |||  |||||   |||||
seq2  TTCTTATATGAGAGA---TTAATTTGCTTT--TCAGAAGCAA--GAGTTT  1081

seq1  CATTGTGCTTGT  1112
      || |||||||||
seq2  CA-TGTGCTTGT  1092