BAC Information

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BAC

Clone NameB6Ng01-065P15
Chromosome12 (Build37)
Map Location 76,999,355 - 77,158,890
singlet/doubletdoublet
Overlap geneSyne2
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1
Downstream geneEsr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065P15.bB6Ng01-065P15.g
ACCDH885295DH885296
length1,088896
definitionDH885295|Mus musculus domesticus DNA, BAC clone: B6Ng01-065P15, 5' end.DH885296|Mus musculus domesticus DNA, BAC clone: B6Ng01-065P15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,999,355 - 77,000,446)(77,158,003 - 77,158,890)
sequence
gaattcttgagttcaaatcatttttgtctcagcctctcccatatctggga
ccgtaaggtttctaccaccatgcccagcttctatcaagtatagttaggaa
tattgttaatgattgtataatgtgttaacacagaattgtaactctaaaac
accagtactgcatacaagtgcgaaccaagagaaactttgttctgaagttc
cgagtgcaggcagaagggagttttagttggacaggatgcactggcaagag
ttggatcatctctgcttgtcagaagccatgttgataatcattgtgtggct
cagatgtgtatgccatgcacttggggagctgagacaggaggattgctgta
agtctgaggccagctttgggtcacagtgagttctgtaccaatatgaggta
cagagtgagacccatcccacaaaagcaaaaccaactgccatcatttctac
aggaaatggcagggcagcagttgtcttgtctgctctgggctgggcagatt
ttcacaggtggcatcatgatctgatgtctagagacgggtggctttgccca
ctcctttgcagtagaaatcccataactgacacccgtgggccattttgttg
ttattcaatttatcagactgaagcaacctgggtagagaaaggatacggga
ttcaaagatttttaacctttgcctaagccagactttaacataacctttag
ctctaggcctttaggtagcagattgcgtcttataaatggaatgaagtgtt
tcaaggttgttatgaaacgctcttctaactgcagagtctgctgtcattta
tggagtcactgaatgaagaaaggaatccttcattgatgtcctgtcactga
aagggaggatgggagagctgaatgaagatgaatcacggctgagacaggct
ggaccagcctcatgcacaaggtgactgtgtttcgtacgtcacttagaact
ctctcggggccggctctgtaggaaagtcttgactctagacttaaggtgga
cggggtaggtgcttcatcagagcacaggaccgtgcttggcccctccccaa
caatatcctttatggtaggacttaattttaagggaagt
gaattccttgactatttgggtgcactcaagttagttcaaagtgatttcaa
gataaaaacatctatggacagtacatgtatattaataacataggtatatt
aataacttattagtaagatagagtcccacaatgttctgcggtttgagacc
ttaggaagatagaacagggataaaagggaagtgaatggctgaactcatag
gtaagtagtgtgtgggcagattcatgcagcagtaatcagcctatgtttta
gccccatggaaaatttaagcccttaggaaagacacatattgccaatacca
ggaacaagtcaggaacttcttctttctcttcatggtaaagtttattcaga
ttttcttccttgtgcacaataaggtcttttgaatatgccagccggtctgt
aaaatccttaaactgtgccagaacaatctataaagagacattttcattag
aaaaatttcatgagtgcctaagacagaagtaagcatattatgggctgctg
aaagctcaagttattttctgctcaacatcacctcaggggtctctgtagag
accctggaatctcatcctgtgccttggggtcttgtagaccagttccacac
agagacgggagtactctgttctcttagttcccacactacagctcggggag
atgaaggaagactccaacgacagctttgtttccagcagccatactgtgtc
tcaattactttactctaaatccagataactgaaatctgaacagggtacta
agcatctcctttgttaaattacatgtttgataagaacagatggtggctta
agagcaggcccttcctgccactgattaaagcaaactctgttggggtgacc
tccctatgggctgccaaacaggaacggctccaggatccaaaactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76999355_77000446
seq2: B6Ng01-065P15.b_50_1137

seq1  GAATTCTTGAGTTCAAATCATTTTTGTCTCAGCCTCTCCCATATCTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGTTCAAATCATTTTTGTCTCAGCCTCTCCCATATCTGGGA  50

seq1  CCGTAAGGTTTCTACCACCATGCCCAGCTTCTATCAAGTATAGTTAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTAAGGTTTCTACCACCATGCCCAGCTTCTATCAAGTATAGTTAGGAA  100

seq1  TATTGTTAATGATTGTATAATGTGTTAACACAGAATTGTAACTCTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAATGATTGTATAATGTGTTAACACAGAATTGTAACTCTAAAAC  150

seq1  ACCAGTACTGCATACAAGTGCGAACCAAGAGAAACTTTGTTCTGAAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACTGCATACAAGTGCGAACCAAGAGAAACTTTGTTCTGAAGTTC  200

seq1  CGAGTGCAGGCAGAAGGGAGTTTTAGTTGGACAGGATGCACTGGCAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGCAGGCAGAAGGGAGTTTTAGTTGGACAGGATGCACTGGCAAGAG  250

seq1  TTGGATCATCTCTGCTTGTCAGAAGCCATGTTGATAATCATTGTGTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCATCTCTGCTTGTCAGAAGCCATGTTGATAATCATTGTGTGGCT  300

seq1  CAGATGTGTATGCCATGCACTTGGGGAGCTGAGACAGGAGGATTGCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTGTATGCCATGCACTTGGGGAGCTGAGACAGGAGGATTGCTGTA  350

seq1  AGTCTGAGGCCAGCTTTGGGTCACAGTGAGTTCTGTACCAATATGAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAGGCCAGCTTTGGGTCACAGTGAGTTCTGTACCAATATGAGGTA  400

seq1  CAGAGTGAGACCCATCCCACAAAAGCAAAACCAACTGCCATCATTTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGAGACCCATCCCACAAAAGCAAAACCAACTGCCATCATTTCTAC  450

seq1  AGGAAATGGCAGGGCAGCAGTTGTCTTGTCTGCTCTGGGCTGGGCAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGCAGGGCAGCAGTTGTCTTGTCTGCTCTGGGCTGGGCAGATT  500

seq1  TTCACAGGTGGCATCATGATCTGATGTCTAGAGACGGGTGGCTTTGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGGTGGCATCATGATCTGATGTCTAGAGACGGGTGGCTTTGCCCA  550

seq1  CTCCTTTGCAGTAGAAATCCCATAACTGACACCCGTGGGCCATTTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTGCAGTAGAAATCCCATAACTGACACCCGTGGGCCATTTTGTTG  600

seq1  TTATTCAATTTATCAGACTGAAGCAACCTGGGTAGAGAAAGGATACGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAATTTATCAGACTGAAGCAACCTGGGTAGAGAAAGGATACGGGA  650

seq1  TTCAAAGATTTTTAACCTTTGCCTAAGCCAGACTTTAACATAACCTTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGATTTTTAACCTTTGCCTAAGCCAGACTTTAACATAACCTTTAG  700

seq1  CTCTAGGCCTTTAGGTAGCAGATTGCGTCTTATAAATGGAATGAAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGCCTTTAGGTAGCAGATTGCGTCTTATAAATGGAATGAAGTGTT  750

seq1  TCAAGGTTGTTATGAAACGCTCTTCTAACTGCAGAGTCTGCTGTCATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTTGTTATGAAACGCTCTTCTAACTGCAGAGTCTGCTGTCATTTA  800

seq1  TGGAGTCACTGAATGAAGAAAAGGAATCCTTCATTGATGTCCTGTCACTG  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGGAGTCACTGAATGAAG-AAAGGAATCCTTCATTGATGTCCTGTCACTG  849

seq1  AAAGGGAGGATGGGAGAGCTGAATGAAGATGAATCACGGCTGAGACAAGG  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAGGGAGGATGGGAGAGCTGAATGAAGATGAATCACGGCTGAGAC-AGG  898

seq1  CTGGACCAGCCTCATGCACCAGGTGACTGTGTTTCGTACGTCACTTAGAA  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGGACCAGCCTCATGCACAAGGTGACTGTGTTTCGTACGTCACTTAGAA  948

seq1  CTCTTCTCGGGG-CGGCTCTGTTAGGAAAAGTCTTGACTCTAGACTTTAG  999
      ||| |||||||| |||||||| |||| |||||||||||||||||||| ||
seq2  CTC-TCTCGGGGCCGGCTCTG-TAGG-AAAGTCTTGACTCTAGACTTAAG  995

seq1  GT-GACGGGGTAGGTGCTTCATCAGAGCACAGGACCGTGCTTTGCCCCTC  1048
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTGGACGGGGTAGGTGCTTCATCAGAGCACAGGACCGTGCTTGGCCCCTC  1045

seq1  CCCACACAATATCATTTAT-GTAGGACTTTAATTTTAAGGGAAGT  1092
      |||| |||||||| ||||| ||||||| |||||||||||||||||
seq2  CCCA-ACAATATCCTTTATGGTAGGAC-TTAATTTTAAGGGAAGT  1088

seq1: chr12_77158003_77158890
seq2: B6Ng01-065P15.g_69_964 (reverse)

seq1  GCAGTT----------------TTACTGTTTGGACAGCACCATAGGGAAG  34
      ||||||                || |||||||| |||| ||||||||| |
seq2  GCAGTTTTGGATCCTGGAGCCGTTCCTGTTTGG-CAGC-CCATAGGGAGG  48

seq1  TCACCCCAAACAGAGTCTGGCTTAATCAAGTGAGCAAGGAAGGGCCTGCT  84
      ||||||| |||||||| ||  |||||| |||| || ||||||||||||||
seq2  TCACCCC-AACAGAGTTTGCTTTAATC-AGTG-GC-AGGAAGGGCCTGCT  94

seq1  CTTAGGCCACCATCTGTTCTTTATCAAACATGTTAATTTAAC-AAGGAGC  133
      |||| |||||||||||||| |||||||||||| ||||||||| |||||| 
seq2  CTTAAGCCACCATCTGTTC-TTATCAAACATG-TAATTTAACAAAGGAG-  141

seq1  ATGCTTAGTACCCTGTTCAGATCTCAGTTATCTGGATTTAGAGTAAAGTA  183
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATGCTTAGTACCCTGTTCAGATTTCAGTTATCTGGATTTAGAGTAAAGTA  191

seq1  ATTGAGACACAGGTATGGCTGCTGGAAACACAGCTGTCGTTGGAGTCTTC  233
      ||||||||||| |||||||||||||||||| |||||||||||||||||||
seq2  ATTGAGACACA-GTATGGCTGCTGGAAACAAAGCTGTCGTTGGAGTCTTC  240

seq1  CTTCATCT-CCCGAGCTGTAGTGTGGGAACTAAGAGAACAGAGTACTCCC  282
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTCCCCGAGCTGTAGTGTGGGAACTAAGAGAACAGAGTACTCCC  290

seq1  GTCTCTGTGTGGAACTGGTCTACAAGACCCCAAGGCACAGGATGAGATTC  332
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTGTGGAACTGGTCTACAAGACCCCAAGGCACAGGATGAGATTC  340

seq1  CAGGGTCTCTACAGAGACCCCTGAGGTGATGTTGAGCAGAAAATAACTTG  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTCTACAGAGACCCCTGAGGTGATGTTGAGCAGAAAATAACTTG  390

seq1  AGCTTTCAGCAGCCCATAATATGCTTACTTCTGTCTTAGGCACTCATGAA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCAGCAGCCCATAATATGCTTACTTCTGTCTTAGGCACTCATGAA  440

seq1  ATTTTTCTAATGAAAATGTCTCTTTATAGATTGTTCTGGCACAGTTTAAG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTAATGAAAATGTCTCTTTATAGATTGTTCTGGCACAGTTTAAG  490

seq1  GATTTTACAGACCGGCTGGCATATTCAAAAGACCTTATTGTGCACAAGGA  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTACAGACCGGCTGGCATATTCAAAAGACCTTATTGTGCACAAGGA  540

seq1  AGAAAATCTGAATAAACTTTACCATGAAGAGAAAGAAGAAGTTCCTGACT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCTGAATAAACTTTACCATGAAGAGAAAGAAGAAGTTCCTGACT  590

seq1  TGTTCCTGGTATTGGCAATATGTGTCTTTCCTAAGGGCTTAAATTTTCCA  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGGTATTGGCAATATGTGTCTTTCCTAAGGGCTTAAATTTTCCA  640

seq1  TGGGGCTAAAACATAGGCTGATTACTGCTGCATGAATCTGCCCACACACT  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTAAAACATAGGCTGATTACTGCTGCATGAATCTGCCCACACACT  690

seq1  ACTTACCTATGAGTTCAGCCATTCACTTCCCTTTTATCCCTGTTCTATCT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACCTATGAGTTCAGCCATTCACTTCCCTTTTATCCCTGTTCTATCT  740

seq1  TCCTAAGGTCTCAAACCGCAGAACATTGTGGGACTCTATCTTACTAATAA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGGTCTCAAACCGCAGAACATTGTGGGACTCTATCTTACTAATAA  790

seq1  GTTATTAATATACCTATGTTATTAATATACATGTACTGTCCATAGATGTT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAATATACCTATGTTATTAATATACATGTACTGTCCATAGATGTT  840

seq1  TTTATCTTGAAATCACTTTGAACTAACTTGAGTGCACCCAAATAGTCAAG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTGAAATCACTTTGAACTAACTTGAGTGCACCCAAATAGTCAAG  890

seq1  GAATTC  888
      ||||||
seq2  GAATTC  896