BAC Information

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BAC

Clone NameB6Ng01-066A24
Chromosome12 (Build37)
Map Location 43,621,619 - 43,720,210
singlet/doubletdoublet
Overlap genenone
Upstream geneImmp2l, EG638533
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066A24.bB6Ng01-066A24.g
ACCDH885350DH885351
length1,1361,123
definitionDH885350|Mus musculus domesticus DNA, BAC clone: B6Ng01-066A24, 5' end.DH885351|Mus musculus domesticus DNA, BAC clone: B6Ng01-066A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,621,619 - 43,622,780)(43,719,082 - 43,720,210)
sequence
gaattcatatagtcagttgaggctccctagtactatttatcatgagggtt
catagttggttttgagaataactcaaattgtttggtagtcactaagcacc
ataaaatatacaattagaatacaagtgttctttttaaaattcaacttcta
atagtttggttttatggacaccaaggaagaacactaaacaaagaatggag
ctgaccccctatttcagtcataacaatcctatacattatttagaacctct
tcatttctgctgattattatctaacatagaacatattatatagcacggtt
taatttaaaagccagataaaaacgtgtatgctgagggtgggagcaatggt
aagtgtagcagaagcttgccaaagcactgaattttttccacaggtcaatt
aactggctttgatttacttctaatgaatacagtattttaacagcattttc
aagaaactgtttggcttcaggtgaaacacctcaaaataatctatgaaaga
catagtataagcactagttaatgatatcctggcaacaaataataaaaaaa
tttctgaaaatttctatagccttattcactaagtcattcagcgtttattc
tagacactatcaagcccatccttgcttttgtatcttctctgagtatatgg
ctactataatcccttaatgaaagcctatagaacacagtagcatgaattat
tttttcacttctttttttattagaaattttcttcatttacatttgaaatg
ttatccccaaagtcctccatactcccccccccctccctgctccccaaccc
atccactcctgcttcctggccctggcattcccctgtattggggcatatga
tcttcacaagaccaaaggcctctcctaccattgatggccaactaggtcat
cctctgctacatatgcaactagagacacacaagattttgctgacaggacc
ctgatatagctgtttgtgagctatgccagtgcctgcaatacagaagtgga
tgctcacagtcatttattgatgtaacacaggttccgaaaatagagctaga
gaagtaccagagataggggtgacagctttatagagatcaagatgactaca
gtatccccagtagcatgatttaaatagacttatcta
gaattcaataaaattagaactctctgaacatttttctatggttcatattt
tatagcggtacctaagtgaagtggagctagcaaactccaaggccacagac
atgcctttgatgatacaaatgaaacaatacaatctctatcccacaattga
gggactctaactttacctggactggagaagaaatgtactaatcccttata
atgcagttaacatactattttgtcacttacccatttatctcataccctac
tgcatttgtgtttcttgtgcacagcacactacatttagattagtaactct
cataccttttattagatgtttctaagtgatttgatattcagatttaaaaa
gactgtggcccattaataaatatgtttatgtggaaaactttataaaattt
catgcaaaatagatccataattcaaatcactcagaaaacccttcttactg
atctaacagaggccaagaggaagcacagtggggcttcatttaatagacag
tgaagattattggtgtccctgaagacagagccccaacactttaaactctc
aacatttaaaaatacttattttaagatatcaatattaactggtatcaatg
tgtgtatcacttaaataatggaagaattctcatgttttagacaagtgtta
tgaatttgaaattatttttaggatagtgttttagagttggaggggtataa
attgtcagatatatctgttacagcttttcatagagactaaacctcatgta
atttctattaagttgtagaatgaagaagttttaaactagcacttcaatca
atatctttatttgtctcatactccctttctgcaaagtatactatacaaat
gttttcgctagggtgtgtgtctctcaatattttttaattaaatttagttt
atggaggaaaaattgtttatcatacaaagccagagataggtttttagata
gctttgtctcttttattttcaataaaacttatgtatattggaaaggcata
gagagacatttatatggtatttaaaatacatacatatacatgtgaccccc
cttcagttggtctgtcagatgatccaagaaactcccaacaactagtcatt
gcccatggttttgggtagctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_43621619_43622780
seq2: B6Ng01-066A24.b_29_1164

seq1  GAATTCATATAGTCAGTTGAGGCTCCCTAGTACTATTTATCATGAGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAGTCAGTTGAGGCTCCCTAGTACTATTTATCATGAGGGTT  50

seq1  CATAGTTGGTTTTGAGAATAACTCAAATTGTTTGGTAGTCACTAAGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTGGTTTTGAGAATAACTCAAATTGTTTGGTAGTCACTAAGCACC  100

seq1  ATAAAATATACAATTAGAATACAAGTGTTCTTTTTAAAATTCAACTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATATACAATTAGAATACAAGTGTTCTTTTTAAAATTCAACTTCTA  150

seq1  ATAGTTTGGTTTTATGGACACCAAGGAAGAACACTAAACAAAGAATGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTGGTTTTATGGACACCAAGGAAGAACACTAAACAAAGAATGGAG  200

seq1  CTGACCCCCTATTTCAGTCATAACAATCCTATACATTATTTAGAACCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCCTATTTCAGTCATAACAATCCTATACATTATTTAGAACCTCT  250

seq1  TCATTTCTGCTGATTATTATCTAACATAGAACATATTATATAGCACGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTGCTGATTATTATCTAACATAGAACATATTATATAGCACGGTT  300

seq1  TAATTTAAAAGCCAGATAAAAACGTGTATGCTGAGGGTGGGAGCAATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAAAAGCCAGATAAAAACGTGTATGCTGAGGGTGGGAGCAATGGT  350

seq1  AAGTGTAGCAGAAGCTTGCCAAAGCACTGAATTTTTTCCACAGGTCAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTAGCAGAAGCTTGCCAAAGCACTGAATTTTTTCCACAGGTCAATT  400

seq1  AACTGGCTTTGATTTACTTCTAATGAATACAGTATTTTAACAGCATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTTTGATTTACTTCTAATGAATACAGTATTTTAACAGCATTTTC  450

seq1  AAGAAACTGTTTGGCTTCAGGTGAAACACCTCAAAATAATCTATGAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACTGTTTGGCTTCAGGTGAAACACCTCAAAATAATCTATGAAAGA  500

seq1  CATAGTATAAGCACTAGTTAATGATATCCTGGCAACAAATAATAAAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTATAAGCACTAGTTAATGATATCCTGGCAACAAATAATAAAAAAA  550

seq1  TTTCTGAAAATTTCTATAGCCTTATTCACTAAGTCATTCAGCGTTTATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAAAATTTCTATAGCCTTATTCACTAAGTCATTCAGCGTTTATTC  600

seq1  TAGACACTATCAAGCCCATCCTTGCTTTTGTATCTTCTCTGAGTATATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTATCAAGCCCATCCTTGCTTTTGTATCTTCTCTGAGTATATGG  650

seq1  CTACTATAATCCCTTAATGAAAGCCTATAGAACACAGTAGCATGAATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATAATCCCTTAATGAAAGCCTATAGAACACAGTAGCATGAATTAT  700

seq1  TTTTTCACTTCTTTTTTTATTAGAAATTTTCTTCATTTACATTTGAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACTTCTTTTTTTATTAGAAATTTTCTTCATTTACATTTGAAATG  750

seq1  TTATCCCCAAAGTCCTCCATACTCCCCCCCCCCTCCCTGCTCCCCAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCCAAAGTCCTCCATACTCCCCCCCCCCTCCCTGCTCCCCAACCC  800

seq1  ATCCACTCCTGCTTCCTGGCCCTGGCATTCCCCTGTATTGGGGCATATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACTCCTGCTTCCTGGCCCTGGCATTCCCCTGTATTGGGGCATATGA  850

seq1  TCTTCACAAGACCAAAGGCCTCTCCTACCATTGATGGCCAACTAGGTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAAGACCAAAGGCCTCTCCTACCATTGATGGCCAACTAGGTCAT  900

seq1  CCTCTGCTACATATGCAACTAGAGACACAACAAGATTTTGCTGACAGGAC  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTCTGCTACATATGCAACTAGAGACAC-ACAAGATTTTGCTGACAGGAC  949

seq1  CCTGATATAGCTGTTTGTGAGGCTATGCCAGTGCCTGGCAAATACAGAAG  1000
      |||||||||||||||||||| ||||||||||||||||   ||||||||||
seq2  CCTGATATAGCTGTTTGTGA-GCTATGCCAGTGCCTG--CAATACAGAAG  996

seq1  TGGATGCTCACAGTCATTTATTGGATGTAACACAGGGTCCCGAAAATAGG  1050
      |||||||||||||||||||||| ||||||||||| ||| ||||||||| |
seq2  TGGATGCTCACAGTCATTTATT-GATGTAACACA-GGTTCCGAAAATA-G  1043

seq1  AGCTAGAGAAAGTAACCAAGGAGATAAAGGGGTTGACAGCTCTATAGGAG  1100
      |||||||| |||| ||||  ||||||   ||| |||||||| |||||   
seq2  AGCTAGAG-AAGT-ACCA--GAGATA---GGGGTGACAGCTTTATAG--A  1084

seq1  GATCAACAGTATGAACTAACCAGTACCCCACAGTAGCATGATTTATAATA  1150
      ||||||    ||| ||||  ||||| ||| ||||||||||||||| ||| 
seq2  GATCAA---GATG-ACTA--CAGTATCCC-CAGTAGCATGATTTA-AAT-  1125

seq1  AGACTTTATCTA  1162
      |||| |||||||
seq2  AGAC-TTATCTA  1136

seq1: chr12_43719082_43720210
seq2: B6Ng01-066A24.g_63_1185 (reverse)

seq1  GAGAGGCTACCCAAAACAAT-GGCAATGACCTATGTTGTTGGGAGTCTCT  49
      |||| |||||||||||| || |||||||| ||| |||||||||||| |||
seq2  GAGA-GCTACCCAAAACCATGGGCAATGA-CTA-GTTGTTGGGAGTTTCT  47

seq1  TGGAATCATCTGACAGACAACTTGAAGGGGTGTCACATGTATTATGTATG  99
      ||| |||||||||||||| |  |||||||| |||||||||| ||||||||
seq2  TGG-ATCATCTGACAGACCAACTGAAGGGGGGTCACATGTA-TATGTATG  95

seq1  TATTTTAAAATACATATAAATTGTCTCTCTATGGCTTTTCAAATATACAT  149
      |||||||||   |||||||| ||||||||||| || |||| |||||||||
seq2  TATTTTAAATACCATATAAA-TGTCTCTCTAT-GCCTTTCCAATATACAT  143

seq1  -AGTTTTATTTGAAAATAAAAGAGACAAAAGCTATCTTAAAAACCTATCT  198
       ||||||| ||||||||||||||||| ||||||||| |||||||||||||
seq2  AAGTTTTA-TTGAAAATAAAAGAGAC-AAAGCTATC-TAAAAACCTATCT  190

seq1  CTGGCTTTGTATGATAAACAATTTTTCCTCCATAAACTAAATTTAATTTA  248
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CTGGCTTTGTATGATAAACAATTTTTCCTCCATAAACTAAATTTAATTAA  240

seq1  AAAATATTGAGAGACACACACCCTAGCGAAAACATTTGTATAGTATACTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTGAGAGACACACACCCTAGCGAAAACATTTGTATAGTATACTT  290

seq1  TGCAG-AAGGGAGTATGAGACAAAT-AAGATATTGATTGAAGTGCTAGTT  346
      ||||| ||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGCAGAAAGGGAGTATGAGACAAATAAAGATATTGATTGAAGTGCTAGTT  340

seq1  TAAAACTTCTTCATTCTACAACTTAATAGAAATTACATGAGGTTTAGTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACTTCTTCATTCTACAACTTAATAGAAATTACATGAGGTTTAGTCT  390

seq1  CTATGAAAAGCTGTAACAGATATATCTGACAATTTATACCCCTCCAACTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAAAGCTGTAACAGATATATCTGACAATTTATACCCCTCCAACTC  440

seq1  TAAAACACTATCCTAAAAATAATTTCAAATTCATAACACTTGTCTAAAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACTATCCTAAAAATAATTTCAAATTCATAACACTTGTCTAAAAC  490

seq1  ATGAGAATTCTTCCATTATTTAAGTGATACACACATTGATACCAGTTAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAATTCTTCCATTATTTAAGTGATACACACATTGATACCAGTTAAT  540

seq1  ATTGATATCTTAAAATAAGTATTTTTAAATGTTGAGAGTTTAAAGTGTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATCTTAAAATAAGTATTTTTAAATGTTGAGAGTTTAAAGTGTTG  590

seq1  GGGCTCTGTCTTCAGGGACACCAATAATCTTCACTGTCTATTAAATGAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTGTCTTCAGGGACACCAATAATCTTCACTGTCTATTAAATGAAG  640

seq1  CCCCACTGTGCTTCCTCTTGGCCTCTGTTAGATCAGTAAGAAGGGTTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTGTGCTTCCTCTTGGCCTCTGTTAGATCAGTAAGAAGGGTTTTC  690

seq1  TGAGTGATTTGAATTATGGATCTATTTTGCATGAAATTTTATAAAGTTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATTTGAATTATGGATCTATTTTGCATGAAATTTTATAAAGTTTT  740

seq1  CCACATAAACATATTTATTAATGGGCCACAGTCTTTTTAAATCTGAATAT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAAACATATTTATTAATGGGCCACAGTCTTTTTAAATCTGAATAT  790

seq1  CAAATCACTTAGAAACATCTAATAAAAGGTATGAGAGTTACTAATCTAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCACTTAGAAACATCTAATAAAAGGTATGAGAGTTACTAATCTAAA  840

seq1  TGTAGTGTGCTGTGCACAAGAAACACAAATGCAGTAGGGTATGAGATAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTGCTGTGCACAAGAAACACAAATGCAGTAGGGTATGAGATAAA  890

seq1  TGGGTAAGTGACAAAATAGTATGTTAACTGCATTATAAGGGATTAGTACA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAGTGACAAAATAGTATGTTAACTGCATTATAAGGGATTAGTACA  940

seq1  TTTCTTCTCCAGTCCAGGTAAAGTTAGAGTCCCTCAATTGTGGGATAGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTCCAGTCCAGGTAAAGTTAGAGTCCCTCAATTGTGGGATAGAG  990

seq1  ATTGTATTGTTTCATTTGTATCATCAAAGGCATGTCTGTGGCCTTGGAGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTGTTTCATTTGTATCATCAAAGGCATGTCTGTGGCCTTGGAGT  1040

seq1  TTGCTAGCTCCACTTCACTTAGGTACCGCTATAAAATATGAACCATAGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGCTCCACTTCACTTAGGTACCGCTATAAAATATGAACCATAGAA  1090

seq1  AAATGTTCAGAGAGTTCTAATTTTATTGAATTC  1129
      |||||||||||||||||||||||||||||||||
seq2  AAATGTTCAGAGAGTTCTAATTTTATTGAATTC  1123