BAC Information

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BAC

Clone NameB6Ng01-066L04
Chromosome12 (Build37)11 (Build37)
Map Location 77,330,116 - 77,330,89854,220,972 - 54,221,412
singlet/doubletsingletsinglet
Overlap geneTex21
Upstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957
Downstream geneMthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066L04.bB6Ng01-066L04.g
ACCDH885805DH885806
length1,121333
definitionDH885805|Mus musculus domesticus DNA, BAC clone: B6Ng01-066L04, 5' end.DH885806|Mus musculus domesticus DNA, BAC clone: B6Ng01-066L04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,330,116 - 77,330,898)(54,220,972 - 54,221,412)
sequence
gaattcaacttagtgttattttcacatcgttcagtcaaacttagccagtc
aaacttagccagagttccaacgccctacttaaaattcaactagaaagtta
cctaccaagtactaattagcattataaagtcagagtctgcagctccaggc
ctttcagttagttgtttactagaaaggacagtcttaagccagatacagtt
taccataagaaaagttaaagaatcccagtgaagcaagttttttctttagc
cctagattccaggcagaactattgagcatagataattttcccccctcagg
ccagctttttctttttttttattttgttaataatagggaggagatgtagt
ctcccctcccctagcctgaaacctgcttgctcggggtggagcttcctgct
cattcgttctgccacgcccactgctggaacctgaggagccacacacgtgc
acctttctactggaccagagattattcggcgggaatcgggtcccctcccc
cttccttcataactagtgtcccaacaataaaatttgagccttgatcagag
taactgtcttggctacattttttcttccgccccgtctagattcctctctt
acagctcgagcggccttctcagtcgaaccgttcacgttgcgagctgctgg
cggccgcaacagcttggcagttgagagaactgtttatatgtctgagaacc
caggttccattctaagcacccacatgctacctcacaaccatctctaacac
tagtcccagggggagctcacaccctcttctggcctccgtgggcaccagat
tggcatgcagagcacagatacagatgaatattattattaaaattttaaat
agagccacagtgacagtttaagcatgaaaaatgtctcatacctttacaca
tcagtcacccaatctcaggggttgaaagccaagtgtgtctcattttgttc
caagcattcatttgcgctgatttcactggttcacctgcctgtttcagggc
tcttttgtgaggtgcatcagccgacagagcatgcaattgctgctgacagt
cctaagaagctcaccccaccagggtcagaatccgaaaacccagaagaagt
cacagccaggcttcgtggcgt
cagagaggcagaagtagacatctctgagtttgaggtcagcctggtctaca
gactgagttccagtacagccagggctacaaagagaaaccttgtcttgaaa
aacaaactttcttatagaacccagaccaccagcccaggaatgacccccac
ccacaatgggctgtgctctcgccctctgctccccattcattaataagaaa
atgcagccaggcggtggtggtgcatgcctttaatcccagcacttgggaga
cagaggcaggcaggtttctgagttggaggccagcctggtctacaaagtga
gttccaggacagccagggctatacagagaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77330116_77330898
seq2: B6Ng01-066L04.b_401_1168

seq1  CCCTCCCCTAGCCTGAAACCTGCTTGCTCGGGGTGGAGCTTCCTGCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCTAGCCTGAAACCTGCTTGCTCGGGGTGGAGCTTCCTGCTCAT  50

seq1  TCGTTCTGCCACGCCCACTGCTGGAACCTGAGGAGCCACACACGTGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTGCCACGCCCACTGCTGGAACCTGAGGAGCCACACACGTGCACC  100

seq1  TTTCTACTGGACCAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTGGACCAGAGATTATTCGGCGGGAATCGGGTCCCCTCCCCCTT  150

seq1  CCTTCATAACTAGTGTCCCAACAATAAAATTTGAGCCTTGATCAGAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATAACTAGTGTCCCAACAATAAAATTTGAGCCTTGATCAGAGTAA  200

seq1  CTGTCTTGGCTACATTTTTTCTTCCGCCCCGTCTAGATTCCTCTCTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGGCTACATTTTTTCTTCCGCCCCGTCTAGATTCCTCTCTTACA  250

seq1  GCTCGAGCGGCCTTCTCAGTCGAACCGTTCACGTTGCGAGCTGCTGGCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGAGCGGCCTTCTCAGTCGAACCGTTCACGTTGCGAGCTGCTGGCGG  300

seq1  CCGCAACAGCTTGGCAGTTGAGAGAACTGTTTATATGTCTGAGAACCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAACAGCTTGGCAGTTGAGAGAACTGTTTATATGTCTGAGAACCCAG  350

seq1  GTTCCATTCTAAGCACCCACATGCTACCTCACAACCATCTCTAACACTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTCTAAGCACCCACATGCTACCTCACAACCATCTCTAACACTAG  400

seq1  TCCCAGGGGGAGCTCACACCCTCTTCTGGCCTCCGTGGGCACCAGATTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGGGGAGCTCACACCCTCTTCTGGCCTCCGTGGGCACCAGATTGG  450

seq1  CATGCAGAGCACAGATACAGATGAATATTATTATTAAAATGTTAAATAGA  500
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATGCAGAGCACAGATACAGATGAATATTATTATTAAAATTTTAAATAGA  500

seq1  GCCACAGTGACAGTTTTAAGCATGAAAAATGTCTCATACCTTTAACACAT  550
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  GCCACAGTGACAG-TTTAAGCATGAAAAATGTCTCATACCTTT-ACACAT  548

seq1  CAGTCACCCAATCTCAGGGGTTGAAAGCCAAGTGTGTCTCATTTTGTTTC  600
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGTCACCCAATCTCAGGGGTTGAAAGCCAAGTGTGTCTCATTTTG-TTC  597

seq1  CAAGCATTCATTTTGCGCTTGATTTCACTGGTTCACCTGCCTGTTTTCAG  650
      |||||||||| ||||||| |||||||||||||||||||||||| ||||||
seq2  CAAGCATTCA-TTTGCGC-TGATTTCACTGGTTCACCTGCCTG-TTTCAG  644

seq1  GGCTCTTTTTGTGAGGTGCATCAGCCCGACAGAGCATGGCACATGCTGCT  700
      ||||| |||||||||||||||||| |||||||||||| |||  |||||||
seq2  GGCTC-TTTTGTGAGGTGCATCAG-CCGACAGAGCAT-GCAATTGCTGCT  691

seq1  GACCAGTCCTAAGAAGCTCACCCCACCAGGGTCCAGAATCACAGACAACC  750
      || ||||||||||||||||||||||||||||| ||||||  | || ||||
seq2  GA-CAGTCCTAAGAAGCTCACCCCACCAGGGT-CAGAAT--CCGAAAACC  737

seq1  CAGAAGACAGTCACAGCACAGTCTTCGTGGCGT  783
      ||||||| ||||||||| ||| |||||||||||
seq2  CAGAAGA-AGTCACAGC-CAGGCTTCGTGGCGT  768

seq1: chr11_54220972_54221412
seq2: B6Ng01-066L04.g_74_406 (reverse)

seq1  GGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGG  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGG  50

seq1  CTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGA  100
      |||||||| |||||||||| ||||||||||||| ||||||||||||||||
seq2  CTGGCCTCCAACTCAGAAACCTGCCTGCCTCTGTCTCCCAAGTGCTGGGA  100

seq1  TTAAAGGCGTACGCCACCA-CACCTGGCAAAATGTGTAGCCCAGGCCTCG  149
      |||||||| | | |||||| | ||||||   || |            || 
seq2  TTAAAGGCATGCACCACCACCGCCTGGCTGCATTT------------TCT  138

seq1  AACTCGTGATCCTCCTGCCTGTGCCTCTTCAGCAAATCATACTGCCGTGT  199
       | |  |||          || |       |||| |          | | 
seq2  TATTAATGA---------ATGGG------GAGCAGA----------GGGC  163

seq1  GCCACCACAACCAGTAAATATCTATTTATAAGCTTGATTCTTCAACTAAA  249
      |  | |||| ||  |       | |   |  |  | |||| |        
seq2  GAGAGCACAGCCCAT-------TGTGGGTGGGGGTCATTCCT--------  198

seq1  CTGCTAGCGCTCTCGCGCGCGCGCGCTCTCTCTCTCCCTCTCTCTTTATT  299
        ||| | | ||| |                                   
seq2  GGGCTGGTGGTCTGG-----------------------------------  213

seq1  TTTATTTATTTTATTTTATTTTTTTAATTTTTTTATTATTTTTTATTTTT  349
       || | ||    | ||| |||||  |                        
seq2  GTTCTATAAGAAAGTTTGTTTTTCAA------------------------  239

seq1  TTGGGACAGAGTTTCTCTGTGTAGCCCTGGATGTCCTGGAACTCACTCTG  399
          ||||  |||||||| ||||||||||| ||| |||||||||| ||||
seq2  ----GACAAGGTTTCTCTTTGTAGCCCTGGCTGTACTGGAACTCAGTCTG  285

seq1  CAGACCAGGCTGGCCTCAAACTCAGAAA--TCTGC--CTGCCTCTG--  441
       ||||||||||| ||||||||||||| |  ||| |  ||||||||   
seq2  TAGACCAGGCTGACCTCAAACTCAGAGATGTCTACTTCTGCCTCTCTG  333