BAC Information

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BAC

Clone NameB6Ng01-066M23
Chromosome3 (Build37)12 (Build37)
Map Location 142,889,655 - 142,890,75450,673,147 - 50,673,207
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
Downstream gene1700001N15Rik, EG668889, EG621809, LOC100039938, LOC100039952, Lmo4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066M23.bB6Ng01-066M23.g
ACCDH885883DH885884
length1,101178
definitionDH885883|Mus musculus domesticus DNA, BAC clone: B6Ng01-066M23, 5' end.DH885884|Mus musculus domesticus DNA, BAC clone: B6Ng01-066M23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,889,655 - 142,890,754)(50,673,147 - 50,673,207)
sequence
gaattcagtaagtcttttggacttcaacgctttgggttataagccaacgt
ttataagcatcttggtctactgaattgcacaggtattatctagaaggact
aggctcaggcataccatatagtcttcctgtacctcagttttctgttagtg
gaagttaaaatagtagattgctcacagaactactttagatgagcaaaccc
tttaaagtatatcaaaagaccatgtagactggaagatatatctttaggct
atgactaaattgaatggcaaagaaaaggaaagaaaatgtctcattagttt
tccatgcttacagatagcaaaaacaagccaagaaagaagaatcaatagtg
gttaagaggtggaagaatgaaggaaacctgtctgacccaacccactgctt
tctagcaggtagtcaaaggctttcaagacaagggaagaaatctgacctct
tacgaatggaatacttgtatggcaatagtagtatacacctttaatcccag
cactcagaagacggacaagcaaatctctgatatctagataagtctgatgt
acagagtgagtttcacgacagccaaggttatatatcttgacttgagaaac
cctgtcatgaaaaacttaaaaaggaacactttaggaggttgaggttgtcc
acatcttgttgcagaactcatgatacagacacaagaggatggttgcaaat
ttcaaggctagcctggtctacacagagagttcaaggtcaaccaatacaca
tatcaaggccctatctcaaaaaaagaaaaaaaaggaaataacaatgaatt
ggaatcaaatgggggctgatatatagccatagagaaaatgatgaaaagag
gatgctcaacttctatacacattccttccttggttcctccttaaacaaaa
gcctgaaacatcaaaatggttcctcctcaggagacataaacttcccacag
catgtttatctctcttctctaatgtgcttcatcagtgtcccgcactgtgg
tgaccacccaatgggaaatacaaccccctgaatgttcaagtatttctact
acttttgctcaaaggctgtatcaatatacttctttttgtaatatataatt
a
aagtcatagcacagcaatggtacatgcctatgtcctagcactagggaggc
aggagtgggaagatcagaagtccaagaccagcattagctgcatacagagt
ctgaggacagcctttgatacagagagaagaaaggaagaaatgaaggaagg
aaaagaaggaatggagggagggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_142889655_142890754
seq2: B6Ng01-066M23.b_35_1133 (reverse)

seq1  ATTATA-ATTACAAAAAGAAATAATATTGATACAGCCTTTGAGC-AAAGT  48
      |||||| ||||||||||||| | ||||||||||||||||||||| |||||
seq2  ATTATATATTACAAAAAGAAGT-ATATTGATACAGCCTTTGAGCAAAAGT  49

seq1  AGTAGAAATACTTGAACATTCAGGGGGTTTGTATTTCCCATTGGGTGGTC  98
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGTAGAAATACTTGAACATTCAGGGGG-TTGTATTTCCCATTGGGTGGTC  98

seq1  ACCACAGTGCGGGACACTGATGAAGCACATTAAGAGAAGAGAGATAAACA  148
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACCACAGTGCGGGACACTGATGAAGCACATT-AGAGAAGAGAGATAAACA  147

seq1  TTGCTGTGGGAGGTTTATGTCTCCTGAGGAGGAACCATTTTGATGTTTCA  198
       |||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  -TGCTGTGGGAAGTTTATGTCTCCTGAGGAGGAACCATTTTGATGTTTCA  196

seq1  GGCTTTTGTTTAAGGAGGAACCAAGGAAGGAATGTGTATAGAAGTTGAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTGTTTAAGGAGGAACCAAGGAAGGAATGTGTATAGAAGTTGAGC  246

seq1  ATTCTCTTTTCATTCATTTTCTCTATGGCTATATATCAGCCCCCATTTGA  298
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTTTTCA-TCATTTTCTCTATGGCTATATATCAGCCCCCATTTGA  295

seq1  TTCCAATTCATTGTTATTTCC-TTTTTTTCTTTTTTTGAGATAGGGCCTT  347
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTCCAATTCATTGTTATTTCCTTTTTTTTCTTTTTTTGAGATAGGGCCTT  345

seq1  GATATGTGTATTGGTTGACCTTGAACTCTCTGTGTAGACCAGGCTAGCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTGTATTGGTTGACCTTGAACTCTCTGTGTAGACCAGGCTAGCCT  395

seq1  TG-AATTTGCAACCATCCTCTTGTGTCTGTATCATGAGTTCTGCAACAAG  446
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTGCAACCATCCTCTTGTGTCTGTATCATGAGTTCTGCAACAAG  445

seq1  ATGTGGACAACCTCAACCTCCTAAAGTGTTCCTTTTTAAGTTTTTCATGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGACAACCTCAACCTCCTAAAGTGTTCCTTTTTAAGTTTTTCATGA  495

seq1  CAGGGTTTCTCAAGTCAAGATATATAACCTTGGCTGTCGTGAAACTCACT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTCTCAAGTCAAGATATATAACCTTGGCTGTCGTGAAACTCACT  545

seq1  CTGTACATCAGACTTATCTAGATATCAGAGATTTGCTTGTCCGTCTTCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATCAGACTTATCTAGATATCAGAGATTTGCTTGTCCGTCTTCTG  595

seq1  AGTGCTGGGATTAAAGGTGTATACTACTATTGCCATACAAGTATTCCATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGATTAAAGGTGTATACTACTATTGCCATACAAGTATTCCATT  645

seq1  CGTAAGAGGTCAGATTTCTTCCCTTGTCTTGAAAGCCTTTGACTACCTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAGAGGTCAGATTTCTTCCCTTGTCTTGAAAGCCTTTGACTACCTGC  695

seq1  TAGAAAGCAGTGGGTTGGGTCAGACAGGTTTCCTTCATTCTTCCACCTCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGCAGTGGGTTGGGTCAGACAGGTTTCCTTCATTCTTCCACCTCT  745

seq1  TAACCACTATTGATTCTTCTTTCTTGGCTTGTTTTTGCTATCTGTAAGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACTATTGATTCTTCTTTCTTGGCTTGTTTTTGCTATCTGTAAGCA  795

seq1  TGGAAAACTAATGAGACATTTTCTTTCCTTTTCTTTGCCATTCAATTTAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAACTAATGAGACATTTTCTTTCCTTTTCTTTGCCATTCAATTTAG  845

seq1  TCATAGCCTAAAGATATATCTTCCAGTCTACATGGTCTTTTGATATACTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGCCTAAAGATATATCTTCCAGTCTACATGGTCTTTTGATATACTT  895

seq1  TAAAGGGTTTGCTCATCTAAAGTAGTTCTGTGAGCAATCTACTATTTTAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTTTGCTCATCTAAAGTAGTTCTGTGAGCAATCTACTATTTTAA  945

seq1  CTTCCACTAACAGAAAACTGAGGTACAGGAAGACTATATGGTATGCCTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCACTAACAGAAAACTGAGGTACAGGAAGACTATATGGTATGCCTGA  995

seq1  GCCTAGTCCTTCTAGATAATACCTGTGCAATTCAGTAGACCAAGATGCTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTCCTTCTAGATAATACCTGTGCAATTCAGTAGACCAAGATGCTT  1045

seq1  ATAAACGTTGGCTTATAACCCAAAGCGTTGAAGTCCAAAAGACTTACTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGTTGGCTTATAACCCAAAGCGTTGAAGTCCAAAAGACTTACTGA  1095

seq1  ATTC  1100
      ||||
seq2  ATTC  1099

seq1: chr12_50673147_50673207
seq2: B6Ng01-066M23.g_195_248 (reverse)

seq1  CTCCCTCCCTCCCTCCCTTCTTCCCTCCCTCCCTTCCTTCCTTCATTTCT  50
      |||||||||||||||| |       ||| ||  |||||||||||||||||
seq2  CTCCCTCCCTCCCTCCAT-------TCCTTCTTTTCCTTCCTTCATTTCT  43

seq1  TCCTTTCTTCT  61
      |||||||||||
seq2  TCCTTTCTTCT  54