BAC Information

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BAC

Clone NameB6Ng01-068C01
Chromosome12 (Build37)
Map Location 63,051,466 - 63,166,161
singlet/doubletdoublet
Overlap geneLOC100040403
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707
Downstream geneLOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068C01.bB6Ng01-068C01.g
ACCDH886808DH886809
length1,0081,091
definitionDH886808|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C01, 5' end.DH886809|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,165,636 - 63,166,161)(63,051,466 - 63,052,516)
sequence
gaattctttggcattcatgaaacaacattcaattccaacactgtgctgtc
tggtggcaccaccatgtactcaggcattgctgacaggatgcaaaaggaga
ttactgctctggctcttagcaccatgaaaatgaagattcactattttctt
tggcagaggcaactctaaaggtttccatttagtcactccacaggtcaagg
aatcaatatgagaattctgccaacttctaattatatctatcccaatgata
cattctgggactggagaaataaccacaggacaaacagcactggacctact
gtaagttacattgcaaccaaacctccactaatcacctgacatccatatgt
ccttcctttaactggaaatcatcatgggttttagggtcaactggattcat
agtcaattcagacagaaccagtatcaagtagacctcagaaagtctgatca
tttccactcccttagtgtacttttacccctgtgaaagatcttatgtcttt
gggagaagggctggagaaaagctaacagtaaaactcttaggtattttatc
aagatactttctcatggaaatttagctgtttcttcatccaagggagttaa
ggtgtacaaactggctcaagtcttgaaattatttcatgtgctgaggttcc
cttttaccatgatacaatttagcctttcttttatttgagaatttttcatg
tacacaaaacaaaaatataggaggcttcttatctatttcttgcctagata
caccatgatgaactgcccataccagaggatcatagaagtcatgcaaccac
aaaatccacttagcctctgctgaccaatattgatcaggacattatgaaca
ttgtttgttttgtttatgctacccattataataactgttttcaccttgcc
tttggcaactcagtaatgccacctggccccgttgtggcccaattaaaccc
tgtgcatttaattccatgacatgagcctcagtgtctcacttatgtctggc
ataagctc
gaattcaccaacttgcttctaatatgcagtgttgtatgctatacctggct
gtaataaagattctaagtatattttgctaagcttgccctgagatttctaa
ctcttatccagtaaaatactataagaaaacatgcaagaccctccacaata
ttgcaggaacaaatctgggacattcctagctatgaacgccaaggttccag
gaggctaaatttccttgaaactcctccactcatgaatgccttcaggcctt
ttggcttgtcaggcagactgcactggagtggatggagcaaaaaaaagcaa
aaagaagaaagaaagagagaaagaaagaaagaaagaaagaaagaaagaaa
gaaagaaagaaaaaaagaaagaaagaaaaaaagaaagaaagaaagaagag
agagagaagaaaggaaggaaggaaggaaggaaggaaggaaggaaagagag
agagagagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaa
agaaagaaagaaagaaaataaggaaaagagggaaaagaaaagaaactcaa
aattgtgctttgctatgaaacgttcgtggttcaacatatttagatctaaa
aagatgtccaaccatgacacaggggcaagtgttccactatattcatggtt
accttatttgtgatagccagagctggaaaaaactggtatgttctatgaca
gaagaaaggatacagataatgaggttcatttacacaatggaatactacac
aactgttaagaatgagaacttcctgagttttgcagccaaattgatggaat
tggaaaatatgatcctgagtgaggtaactcagaccctaaagttcatgcat
ggtatgtactcattaatacatggatattgggagaaaaaaaaagtacagaa
tatccaggataaaatccacagaactcaaaagggtcaacaagctgaagtgc
ccaagtgaggacaccttccatcccacttgggagagagaagaatgcaatta
cagttggggagggtagagaaacctgggagaaaagtgaatgggcgactacg
gggtaaacttgatctgttatttggacagtaaggactgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63165636_63166161
seq2: B6Ng01-068C01.b_44_569 (reverse)

seq1  GTTAGCTTTTCTCCAGCCCTTCTCCCAAAGACATAAGATCTTTCACAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTTTCTCCAGCCCTTCTCCCAAAGACATAAGATCTTTCACAGGG  50

seq1  GTAAAAGTACACTAAGGGAGTGGAAATGATCAGACTTTCTGAGGTCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTACACTAAGGGAGTGGAAATGATCAGACTTTCTGAGGTCTACT  100

seq1  TGATACTGGTTCTGTCTGAATTGACTATGAATCCAGTTGACCCTAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTGGTTCTGTCTGAATTGACTATGAATCCAGTTGACCCTAAAACC  150

seq1  CATGATGATTTCCAGTTAAAGGAAGGACATATGGATGTCAGGTGATTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGATTTCCAGTTAAAGGAAGGACATATGGATGTCAGGTGATTAGT  200

seq1  GGAGGTTTGGTTGCAATGTAACTTACAGTAGGTCCAGTGCTGTTTGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTTGGTTGCAATGTAACTTACAGTAGGTCCAGTGCTGTTTGTCCT  250

seq1  GTGGTTATTTCTCCAGTCCCAGAATGTATCATTGGGATAGATATAATTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATTTCTCCAGTCCCAGAATGTATCATTGGGATAGATATAATTAG  300

seq1  AAGTTGGCAGAATTCTCATATTGATTCCTTGACCTGTGGAGTGACTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGGCAGAATTCTCATATTGATTCCTTGACCTGTGGAGTGACTAAAT  350

seq1  GGAAACCTTTAGAGTTGCCTCTGCCAAAGAAAATAGTGAATCTTCATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTTTAGAGTTGCCTCTGCCAAAGAAAATAGTGAATCTTCATTTT  400

seq1  CATGGTGCTAAGAGCCAGAGCAGTAATCTCCTTTTGCATCCTGTCAGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGCTAAGAGCCAGAGCAGTAATCTCCTTTTGCATCCTGTCAGCAA  450

seq1  TGCCTGAGTACATGGTGGTGCCACCAGACAGCACAGTGTTGGAATTGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGAGTACATGGTGGTGCCACCAGACAGCACAGTGTTGGAATTGAAT  500

seq1  GTTGTTTCATGAATGCCAAAGAATTC  526
      ||||||||||||||||||||||||||
seq2  GTTGTTTCATGAATGCCAAAGAATTC  526

seq1: chr12_63051466_63052516
seq2: B6Ng01-068C01.g_109_1153

seq1  GGCTGTAATAAAGATTCTAAGTATATTTTGCTAAGCTTGCCCTGAGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAATAAAGATTCTAAGTATATTTTGCTAAGCTTGCCCTGAGATTT  50

seq1  CTAACTCTTATCCAGTAAAATACTATAAGAAAACATGCAAGACCCTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTTATCCAGTAAAATACTATAAGAAAACATGCAAGACCCTCCAC  100

seq1  AATATTGCAGGAACAAATCTGGGACATTCCTAGCTATGAACGCCAAGGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGCAGGAACAAATCTGGGACATTCCTAGCTATGAACGCCAAGGTT  150

seq1  CCAGGAGGCTAAATTTCCTTGAAACTCCTCCACTCATGAATGCCTTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGGCTAAATTTCCTTGAAACTCCTCCACTCATGAATGCCTTCAGG  200

seq1  CCTTTTGGCTTGTCAGGCAGACTGCACTGGAGTGGATGGAGCAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTGGCTTGTCAGGCAGACTGCACTGGAGTGGATGGAGCAAAAAAAA  250

seq1  GCAAAAAGAAGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAGAAGAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  300

seq1  GAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAAAAAGAAAGAAAGAAAGA  350

seq1  AGAGAGAGAGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAG  400

seq1  AGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  450

seq1  AGAAAGAAAGAAAGAAAGAAAATAAGGAAAAGAGGGAAAAGAAAAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAATAAGGAAAAGAGGGAAAAGAAAAGAAAC  500

seq1  TCAAAATTGTGCTTTGCTATGAAACGTTCGTGGTTCAACATATTTAGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATTGTGCTTTGCTATGAAACGTTCGTGGTTCAACATATTTAGATC  550

seq1  TAAAAAGATGTCCAACCATGACACAGGGGCAAGTGTTCCACTATATTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGATGTCCAACCATGACACAGGGGCAAGTGTTCCACTATATTCAT  600

seq1  GGTTACCTTATTTGTGATAGCCAGAGCTGGAAAAAACTGGTATGTTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCTTATTTGTGATAGCCAGAGCTGGAAAAAACTGGTATGTTCTAT  650

seq1  GACAGAAGAAAGGATACAGATAATGAGGTTCATTTACACAATGGAATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGAAAGGATACAGATAATGAGGTTCATTTACACAATGGAATACT  700

seq1  ACACAACTGTTAAGAATGAGAACTTCCTGAGTTTTGCAGCCAAATTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAACTGTTAAGAATGAGAACTTCCTGAGTTTTGCAGCCAAATTGATG  750

seq1  GAATTGGAAAATATGATCCTGAGTGAGGTAACTCAGACCCTAAAGTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGAAAATATGATCCTGAGTGAGGTAACTCAGACCCTAAAGTTCAT  800

seq1  GCATGGTATGTACTCATTAATACATGGATATTGGGAGAAAAAAAAAGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTATGTACTCATTAATACATGGATATTGGGAGAAAAAAAAAGTAC  850

seq1  AGAATATCCAGGATAAAATCCACAGAACTCAAAAGGGTCAACAAGCTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATCCAGGATAAAATCCACAGAACTCAAAAGGGTCAACAAGCTGAA  900

seq1  GTGCCCAAGTGAGGACACC-TCCATCCCACTTGGGAGAGAGAAGAATGCA  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTGCCCAAGTGAGGACACCTTCCATCCCACTTGGGAGAGAGAAGAATGCA  950

seq1  ATTACAAGTGGGGAGGGTAGGAGAAACCTGGGAGAAAAAGTGAATGGGGC  999
      ||||||  ||||||||||| |||||||||||||| |||||||||| ||||
seq2  ATTACAGTTGGGGAGGGTA-GAGAAACCTGGGAG-AAAAGTGAAT-GGGC  997

seq1  GAACTACGGGGTAAACTTGATCTGGTATTGGGACAGGGAAAAGGACTGAA  1049
      | |||||||||||||||||||||| |||| ||||||    ||||||||||
seq2  G-ACTACGGGGTAAACTTGATCTGTTATTTGGACAG---TAAGGACTGAA  1043

seq1  GC  1051
      ||
seq2  GC  1045