BAC Information

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BAC

Clone NameB6Ng01-068D13
Chromosome12 (Build37)
Map Location 8,361,330 - 8,493,382
singlet/doubletdoublet
Overlap geneBC106175
Upstream geneLOC668380, EG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3
Downstream geneRhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068D13.bB6Ng01-068D13.g
ACCDH886874DH886875
length1,0451,027
definitionDH886874|Mus musculus domesticus DNA, BAC clone: B6Ng01-068D13, 5' end.DH886875|Mus musculus domesticus DNA, BAC clone: B6Ng01-068D13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,361,330 - 8,362,401)(8,492,338 - 8,493,382)
sequence
gaattccatggagccaaagggtataacaaaaacatacaaatctgtcatat
gtggaaagcaagttaagaaagcaatcccaaataaaatactcagaaatgaa
ttaaccaagaaagttaaagacttatccactgaagaccattaaacatcatt
gatgggactgggaacatgatgagtcaacagcgaaggccagagttaagatc
ccaaacacccactgtgtttgtgggcatgatgacccacctgcaattctagc
cttggaaggcagagacaaggcatccccaggtgagctggccagggacaata
gctttattgaattcaattgtgatactctggattcaattgtgatactctgc
ttcaaaaaaaaaaaaaaaaagatagaggacaattaaggaagattcccaac
ataagccttggacttccatgtctcacacacaccacacacacatgaataca
catgtgcagcatatatacatacacataaaagaagatgagagaacgctgct
aaaagaaactaaagacccggggaaataaaaagacacgtgtagtcagtcat
gggttgaaagtcttaattaatactggtgctagagagttggctcagacatt
aagagcaccgttattcctgcagaggacccaggttcaattcccagcaccca
catggcagctcacaccatctatacctctagtcccaagtaatcctatgccc
tcttctggcctctgagggcactgcatgctcatggtgaccatacatacaat
acactcaggccaaacacttatacacataaaacaattcaataaagtaaatc
taaattttgtaagacttaatattgttagaaggcaataaccttcagtttga
tatctaggacaatgtcatccttatttagatcccagtaacaagaagaaaga
aagaaagaaagaaagaagaagaagaaagaagaagaaggaggaggaaggag
gagaagaaggaggagaggaggaagagaggagagaggaagagattgaacga
cagctgatcttaactgtgcatgagcagcacgacgccgcacaccta
gaattctttgaggcagagtcttctgaatgtctgaggtcttaataaacaga
ataataacaatacatacattaagaatcttatatggttttttcccttggaa
aaaaacataaaatttagagggcaagattctctgtaggtagtaactttttt
tttttttttttttttaaagatttatttatttattatatgtaagtacactg
tagctgtcttcagacactccagaagagggcgtcagatcttgttacagatg
gttgtgagccaccatgtggttgctgggatttgaactcctgaccttcggaa
gagcagtcaggtgctcttacccactgagccatctcaccagccccgtagta
actttttctctggacttttagggtctgggaggggcaagtttctgatgctt
cagaacttgggacaactatcattcaatttctatggcagctttccttgatc
tttcaagactggagcgagttggtccggtttctgtggttaactgggcagtg
ctatagcctgggtaaattataaggcaaaaggcccctggctctggaggttt
aagaataagaggtacatttgatgatggttttctagtcccaagagagcaca
agacatcacatggcaagagaaaggaaaacacacacacacacacacacaca
cacacacacacacacacacacgtatgtatatgtacatgtatgagtgtgtg
tatatcttttagtttttctctttcacaaagccaccagtaattcaagcatt
actctactctgatgacatttatctaatcctattcaccacccagaagcccc
ttatagctggtatatagtcataccttcttattccttacaacggtcattat
atttcaaaacctaactcctggggaaagatggagggaaaatgccccattcc
gcaggtatcatataatactagaagttgtgtttagcttcaagctacatccg
tgaagttcgatgttgctgtggatgaaaaatgagctatgagcttctttgcc
ttctcctctttctctctccccccactc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8361330_8362401
seq2: B6Ng01-068D13.b_47_1083

seq1  GAATTCCATGGAGCCAAAGGGTATAACAAAAACATACAAATCTGTCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGAGCCAAAGGGTATAACAAAAACATACAAATCTGTCATAT  50

seq1  GTGGAAAGCAAGTTAAGAAAGCAATCCCAAATAAAATACTCAGAAATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGCAAGTTAAGAAAGCAATCCCAAATAAAATACTCAGAAATGAA  100

seq1  TTAACCAAGAAAGTTAAAGACTTATCCACTGAAGACCATTAAACATCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCAAGAAAGTTAAAGACTTATCCACTGAAGACCATTAAACATCATT  150

seq1  GATGGGACTGGGAACATGATGAGTCAACAGCGAAGGCCAGAGTTAAGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACTGGGAACATGATGAGTCAACAGCGAAGGCCAGAGTTAAGATC  200

seq1  CCAAACACCCACTGTGTTTGTGGGCATGATGACCCACCTGCAATTCTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACACCCACTGTGTTTGTGGGCATGATGACCCACCTGCAATTCTAGC  250

seq1  CTTGGAAGGCAGAGACAAGGCATCCCCAGGTGAGCTGGCCAGGGACAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGGCAGAGACAAGGCATCCCCAGGTGAGCTGGCCAGGGACAATA  300

seq1  GCTTTATTGAATTCAATTGTGATACTCTGGATTCAATTGTGATACTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTATTGAATTCAATTGTGATACTCTGGATTCAATTGTGATACTCTGC  350

seq1  TTCAAAAAAAAAAAAAAAAAGATAGAGGACAATTAAGGAAGATTCCCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAAAAAAAAAAAAAGATAGAGGACAATTAAGGAAGATTCCCAAC  400

seq1  ATAAGCCTTGGACTTCCATGTCTCACACACACCACACACACATGAATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCTTGGACTTCCATGTCTCACACACACCACACACACATGAATACA  450

seq1  CATGTGCAGCATATATACATACACATAAAAGAAGATGAGAGAACGCTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAGCATATATACATACACATAAAAGAAGATGAGAGAACGCTGCT  500

seq1  AAAAGAAACTAAAGACCCGGGGAAATAAAAAGACACGTGTAGTCAGTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAACTAAAGACCCGGGGAAATAAAAAGACACGTGTAGTCAGTCAT  550

seq1  GGGTTGAAAGTCTTAATTAATACTGGTGCTAGAGAGTTGGCTCAGACATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGAAAGTCTTAATTAATACTGGTGCTAGAGAGTTGGCTCAGACATT  600

seq1  AAGAGCACCGTTATTCCTGCAGAGGACCCAGGTTCAATTCCCAGCACCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCACCGTTATTCCTGCAGAGGACCCAGGTTCAATTCCCAGCACCCA  650

seq1  CATGGCAGCTCACACCATCTATACCTCTAGTCCCAAGTAATCCTATGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAGCTCACACCATCTATACCTCTAGTCCCAAGTAATCCTATGCCC  700

seq1  TCTTCTGGCCTCTGAGGGCACTGCATGCTCATGGTGACCATACATACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGCCTCTGAGGGCACTGCATGCTCATGGTGACCATACATACAAT  750

seq1  ACACTCAGGCCAAACACTTATACACATAAAACAATTCAATAAAGTAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGGCCAAACACTTATACACATAAAACAATTCAATAAAGTAAATC  800

seq1  TAAATTTTGTAAGACTTAATATTGTTAGAAGGCAATAACCTTCAGTTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTTGTAAGACTTAATATTGTTAGAAGGCAATAACCTTCAGTTTGA  850

seq1  TATCTAGGACAATGTCATCCTTATTTAGATCCCAGTAACAAAGAAAGAAA  900
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  TATCTAGGACAATGTCATCCTTATTTAGATCCCAGTAACAA--GAAGAAA  898

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGG  950
      ||||||||||||||||| |||||   ||||||| |||||  ||||||  |
seq2  GAAAGAAAGAAAGAAAG-AAGAA--GAAGAAAG-AAGAA--GAAGGA--G  940

seq1  AAGGAAGGAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAA  1000
       |||||||| ||           ||| ||||| ||||  | ||||||  |
seq2  GAGGAAGGAGGA-----------GAA-GAAGG-AGGAGAGGAGGAAGAGA  977

seq1  GGAAGAAGGAAAGGAAGGAATAGAAACAGACAAGCTGATCTTAAACTGTG  1050
      |||     || ||||||  || |||   ||| |||||||||| |||||||
seq2  GGA-----GAGAGGAAGAGATTGAA--CGAC-AGCTGATCTT-AACTGTG  1018

seq1  CATGGAGCCAGGCACGACGCCG  1072
      ||| ||||   |||||||||||
seq2  CAT-GAGC--AGCACGACGCCG  1037

seq1: chr12_8492338_8493382
seq2: B6Ng01-068D13.g_69_1095 (reverse)

seq1  GAGTGGGGGGAGAGAGAAGAGGAGGAGAAGGCAGATGAAGGCTACAATAG  50
      |||||||||||||||||  | |||||||||||| | ||| |||   ||||
seq2  GAGTGGGGGGAGAGAGA--AAGAGGAGAAGGCA-AAGAA-GCT--CATAG  44

seq1  CTCAATTTCTTCCATTCCACAAGCAACATTCGAGCTTCACTGGATGTAGC  100
      ||||  || |||   ||||| ||||||| |||| |||||| |||||||||
seq2  CTCA--TTTTTC--ATCCAC-AGCAACA-TCGAACTTCAC-GGATGTAGC  87

seq1  TATGAAGCTAAACACAACCTTCCTAGTATTTATATGATACCTGCGTGACT  150
      | ||||||||||||||||  | |||||| |||||||||||||||| || |
seq2  T-TGAAGCTAAACACAAC--TTCTAGTA-TTATATGATACCTGCG-GAAT  132

seq1  GGGGCATCTTCCCTCCATCTTT-CCCAGGAGTTAAGGTTTTGAAATATAA  199
      ||||||| |||||||||||||| |||||||||| ||||||||||||||||
seq2  GGGGCATTTTCCCTCCATCTTTCCCCAGGAGTT-AGGTTTTGAAATATAA  181

seq1  TGACCGTTGTAAGGAATTAAGAAGGTATGACTATATACCAGCTATAAGGG  249
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGACCGTTGTAAGGAA-TAAGAAGGTATGACTATATACCAGCTATAAGGG  230

seq1  GCTTCTGGGTGGTGAATAGGATTAGAT-AATGTCATCAGAGTAGAGTAAT  298
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCTTCTGGGTGGTGAATAGGATTAGATAAATGTCATCAGAGTAGAGTAAT  280

seq1  GCTTGAATTACTGGTGGCTTTGTGAAAGAGAAAAACTAAAAGATATACAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAATTACTGGTGGCTTTGTGAAAGAGAAAAACTAAAAGATATACAC  330

seq1  ACACTCATACATGTACATATACATACGTGTGTGTGTGTGTGTGTGTGTGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCATACATGTACATATACATACGTGTGTGTGTGTGTGTGTGTGTGT  380

seq1  GTGTGTGTGTGTGTGTGTGTTTTCCTTTCTCTTGCCATGTGATGTCTTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTTTTCCTTTCTCTTGCCATGTGATGTCTTGT  430

seq1  GCTCTCTTGGGACTAGAAAACCATCATCAAATGTACCTCTTATTCTTAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTGGGACTAGAAAACCATCATCAAATGTACCTCTTATTCTTAAA  480

seq1  CCTCCAGAGCCAGGGGCCTTTTGCCTTATAATTTACCCAGGCTATAGCAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGAGCCAGGGGCCTTTTGCCTTATAATTTACCCAGGCTATAGCAC  530

seq1  TGCCCAGTTAACCACAGAAACCGGACCAACTCGCTCCAGTCTTGAAAGAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGTTAACCACAGAAACCGGACCAACTCGCTCCAGTCTTGAAAGAT  580

seq1  CAAGGAAAGCTGCCATAGAAATTGAATGATAGTTGTCCCAAGTTCTGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAGCTGCCATAGAAATTGAATGATAGTTGTCCCAAGTTCTGAAG  630

seq1  CATCAGAAACTTGCCCCTCCCAGACCCTAAAAGTCCAGAGAAAAAGTTAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGAAACTTGCCCCTCCCAGACCCTAAAAGTCCAGAGAAAAAGTTAC  680

seq1  TACGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCTGACTGCTCTTC  730

seq1  CGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGTCAGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCAT  780

seq1  CTGTAACAAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACAAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAG  830

seq1  TGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTACATATAATAAATAAATAAATCTTTAAAAAAAAAAAAAAAAAA  880

seq1  AAAGTTACTACCTACAGAGAATCTTGCCCTCTAAATTTTATGTTTTTTTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACTACCTACAGAGAATCTTGCCCTCTAAATTTTATGTTTTTTTC  930

seq1  CAAGGGAAAAAACCATATAAGATTCTTAATGTATGTATTGTTATTATTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAAAAAACCATATAAGATTCTTAATGTATGTATTGTTATTATTCT  980

seq1  GTTTATTAAGACCTCAGACATTCAGAAGACTCTGCCTCAAAGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTAAGACCTCAGACATTCAGAAGACTCTGCCTCAAAGAATTC  1027