BAC Information

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BAC

Clone NameB6Ng01-068I14
Chromosome12 (Build37)
Map Location 61,638,386 - 61,764,937
singlet/doubletdoublet
Overlap genePpia-ps12_475.1
Upstream geneLOC665644, EG622488, LOC665665
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068I14.bB6Ng01-068I14.g
ACCDH887095DH887096
length1,1151,146
definitionDH887095|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I14, 5' end.DH887096|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,638,386 - 61,639,196)(61,763,773 - 61,764,937)
sequence
gaattgtttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgggtaggggcattcttgaggaagaattatctgagggagaa
atacgattgtcttgagggtgaaaggatggtatcattcagagtcggaagct
gcataaacagatgtgagaggtaaaaatctgttcatttttctctgttcact
tttggttcttctggcaattgcagtctgtgttcctactgctaccccattcc
ttctttgacatattaatatttcttttggctttcagtggtagcggaagaac
agtgctttccccacagttataaaccatcatgccgaatagaatggtgagaa
atcggctcatgtcta
gaattccactcttaaaaagtagagctagatgaaatattaaagaaatatcc
agtataaaaactatatacgggtttattgattaaatgtaactaatgcaaaa
ttaaatgaatgtgtagcctgccaaacttctatcgttcttagcaaatgatc
tctacaacatttctcacgcatgtaaagaaatagggactgtcaggaaagag
agtgataattaaagatctcattatgatgaatgcattttgagaattttatc
aattatgggtttcacacttcccatgaatcattgtataactatgaactatg
taaagtaaggctgaagactaaatttagtcattctctttaactgtatcacc
aaaacaattagcattctggtccatccataataaaggaatagtaagaagcc
tgtatttaagtcctgttatagttaacaccagtagctcttgctgctcctta
gaattaccacattgctttatcattttagttgtataactttgccttcatac
acatcttactccatattaattaacattgtttcttgtttcttgtggatggt
gtttatgactcttaacatgtttggtctctggcagattgtcctataaatgt
agtatgtttatttaaggctcacagacacactgcctttcctcttggtgtga
ttgcactaaatgctggaaacacaagcacagattgctctcaaggatccaca
cttaccaaatgatattctccagggaaaggttactgtccttttttttctct
ttagaacatggttacaaattgttccttctggagaacatctggtatacatg
gccctcatcgaaccctattttaatgttactcttttggatttcttccaata
ctccatctgctttgtctttatgttcatgaaatagagtattatgtgacata
ccagaaaagctcttatgagacatattctcataaagccatgtctctctctc
agtgcaacagcatactatagcatctcttagtgctgatatgtgcatttcta
tgaatcaacagtaggcatcttactatttttgaaaatcatgagatgcactg
aaatcaattggtgtggtaaaagtagtctagttatcagtcctatcatctaa
agctaaaaacttgtttcgggactcactacctagagagaaacatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61638386_61639196
seq2: B6Ng01-068I14.b_355_1156

seq1  AGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTT  50

seq1  GACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATG  100

seq1  ATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTC  150

seq1  CACTGGATGGTTTTGGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATGGTTTTGGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTG  200

seq1  TGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCCACTTGTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCCACTTGTCTGT  250

seq1  CTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGC  300

seq1  TTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAGAAG  350

seq1  AGTTTTTGCTATCCTCGGTTTTTTGTTATTCCAGATGAATTTGCAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGCTATCCTCGGTTTTTTGTTATTCCAGATGAATTTGCAAATTG  400

seq1  CTCCTTCTAATTCGTTGAAGAATTGAGTTGGAATTTTAATGGGGATTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTAATTCGTTGAAGAATTGAGTTGGAATTTTAATGGGGATTGCA  450

seq1  TTGAATCTGTAGATTGCTTTTGGCAAGATAGCCATTTTTACAATGTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTGTAGATTGCTTTTGGCAAGATAGCCATTTTTACAATGTTGGG  500

seq1  TAGGGGCATTCTTGAGGAAGAATTATCTGAGGGAGAAATACGATTGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGCATTCTTGAGGAAGAATTATCTGAGGGAGAAATACGATTGTCTT  550

seq1  GAGGGTGAAAGGATGGTATCATTCAGAGTCGGAAGCTGCATAAACAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGAAAGGATGGTATCATTCAGAGTCGGAAGCTGCATAAACAGATG  600

seq1  TGAGAGGTTAAAAATCTGTTCATTTTTCTCTGTTCACTTTTGGTTCTTCT  650
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGG-TAAAAATCTGTTCATTTTTCTCTGTTCACTTTTGGTTCTTCT  649

seq1  GGCAATTGCAGTCTGTGTTCCTACTGCTACCCCATTCCTTCTTTGACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTGCAGTCTGTGTTCCTACTGCTACCCCATTCCTTCTTTGACATA  699

seq1  TTAATATTTCTTTTGGCTTTTCAGTGTGTAGC-GAAGACCAGTGGCTTTC  749
      ||||||||||||||||| |||||||| ||||| ||||| |||| ||||||
seq2  TTAATATTTCTTTTGGC-TTTCAGTG-GTAGCGGAAGAACAGT-GCTTTC  746

seq1  CCCACAGTTTATAAACCATCAGTGCCAGATTAGTATTGTTGAGAAATCGG  799
      ||||||| ||||||||||||| |||| || ||| | || |||||||||||
seq2  CCCACAG-TTATAAACCATCA-TGCC-GAATAG-AATGGTGAGAAATCGG  792

seq1  TCTCATGGTCTA  811
       ||||| |||||
seq2  -CTCAT-GTCTA  802

seq1: chr12_61763773_61764937
seq2: B6Ng01-068I14.g_69_1214 (reverse)

seq1  CACATTGTTTCTCTTCTAGGTAGGTGAGTGTCAGGAAACAAGTCTGTGAG  50
      |||| |||||||| |||||||| ||||  |||  ||||||||| | | ||
seq2  CACA-TGTTTCTC-TCTAGGTA-GTGA--GTCCCGAAACAAGT-TTTTAG  44

seq1  CTTTAGATGATAATGTAACTGATAACTAGACTACTTTTACCACA-CAATT  99
      ||||||||||||     ||||||||||||||||||||||||||| |||||
seq2  CTTTAGATGATA---GGACTGATAACTAGACTACTTTTACCACACCAATT  91

seq1  GATTTTCAGTGCCATCTCATGATTTCTCAGAAAATAGTAAAGATGCCTTA  149
      || |||||||| ||||||||||||| ||| |||||||| |||||||| ||
seq2  GA-TTTCAGTG-CATCTCATGATTT-TCA-AAAATAGT-AAGATGCC-TA  135

seq1  CTGTTGAATTTCATAGGAATTGCACATATCAGCACTAAGAGATGGCTATA  199
      |||||||  |||||| ||| ||||||||||||||||||||||| ||||||
seq2  CTGTTGA--TTCATA-GAAATGCACATATCAGCACTAAGAGAT-GCTATA  181

seq1  GTATGCTGTTGCACTGAGAGAGAGAACATGGCTTTATGAGAATATGTCTC  249
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTATGCTGTTGCACTGAGAGAGAG-ACATGGCTTTATGAGAATATGTCTC  230

seq1  ATAAGAGCTTTTCTGGTATGTCACATAATACTCTATTTCATGAACATAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGCTTTTCTGGTATGTCACATAATACTCTATTTCATGAACATAAA  280

seq1  GACAAAGCAGATGGAGTATTGGAAGAAATCCAAAAGAGTAACATTAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGCAGATGGAGTATTGGAAGAAATCCAAAAGAGTAACATTAAAAT  330

seq1  AGGGTTCGATGAGGGCCATGTATACCAGATGTTCTCCAGAAGGAACAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCGATGAGGGCCATGTATACCAGATGTTCTCCAGAAGGAACAATT  380

seq1  TGTAACCATGTTCTAAAGAGAAAAAAAAGGACAGTAACCTTTCCCTGGAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCATGTTCTAAAGAGAAAAAAAAGGACAGTAACCTTTCCCTGGAG  430

seq1  AATATCATTTGGTAAGTGTGGATCCTTGAGAGCAATCTGTGCTTGTGTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATTTGGTAAGTGTGGATCCTTGAGAGCAATCTGTGCTTGTGTTT  480

seq1  CCAGCATTTAGTGCAATCACACCAAGAGGAAAGGCAGTGTGTCTGTGAGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATTTAGTGCAATCACACCAAGAGGAAAGGCAGTGTGTCTGTGAGC  530

seq1  CTTAAATAAACATACTACATTTATAGGACAATCTGCCAGAGACCAAACAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATAAACATACTACATTTATAGGACAATCTGCCAGAGACCAAACAT  580

seq1  GTTAAGAGTCATAAACACCATCCACAAGAAACAAGAAACAATGTTAATTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGTCATAAACACCATCCACAAGAAACAAGAAACAATGTTAATTA  630

seq1  ATATGGAGTAAGATGTGTATGAAGGCAAAGTTATACAACTAAAATGATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGTAAGATGTGTATGAAGGCAAAGTTATACAACTAAAATGATAA  680

seq1  AGCAATGTGGTAATTCTAAGGAGCAGCAAGAGCTACTGGTGTTAACTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATGTGGTAATTCTAAGGAGCAGCAAGAGCTACTGGTGTTAACTATA  730

seq1  ACAGGACTTAAATACAGGCTTCTTACTATTCCTTTATTATGGATGGACCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTTAAATACAGGCTTCTTACTATTCCTTTATTATGGATGGACCA  780

seq1  GAATGCTAATTGTTTTGGTGATACAGTTAAAGAGAATGACTAAATTTAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTAATTGTTTTGGTGATACAGTTAAAGAGAATGACTAAATTTAGT  830

seq1  CTTCAGCCTTACTTTACATAGTTCATAGTTATACAATGATTCATGGGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCTTACTTTACATAGTTCATAGTTATACAATGATTCATGGGAAG  880

seq1  TGTGAAACCCATAATTGATAAAATTCTCAAAATGCATTCATCATAATGAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAACCCATAATTGATAAAATTCTCAAAATGCATTCATCATAATGAG  930

seq1  ATCTTTAATTATCACTCTCTTTCCTGACAGTCCCTATTTCTTTACATGCG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAATTATCACTCTCTTTCCTGACAGTCCCTATTTCTTTACATGCG  980

seq1  TGAGAAATGTTGTAGAGATCATTTGCTAAGAACGATAGAAGTTTGGCAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATGTTGTAGAGATCATTTGCTAAGAACGATAGAAGTTTGGCAGG  1030

seq1  CTACACATTCATTTAATTTTGCATTAGTTACATTTAATCAATAAACCCGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACATTCATTTAATTTTGCATTAGTTACATTTAATCAATAAACCCGT  1080

seq1  ATATAGTTTTTATACTGGATATTTCTTTAATATTTCATCTAGCTCTACTT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTTTTTATACTGGATATTTCTTTAATATTTCATCTAGCTCTACTT  1130

seq1  TTTAAGAGTGGAATTC  1165
      ||||||||||||||||
seq2  TTTAAGAGTGGAATTC  1146