BAC Information

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BAC

Clone NameB6Ng01-068I16
Chromosome12 (Build37)
Map Location 62,622,908 - 62,623,992
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677, Nanog-ps2
Downstream geneLrfn5, LOC665699, LOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068I16.bB6Ng01-068I16.g
ACCDH887097DH887098
length1,0671,163
definitionDH887097|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I16, 5' end.DH887098|Mus musculus domesticus DNA, BAC clone: B6Ng01-068I16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
caaggcaagggtaaagcctcagggtctactgggagcaaaattccagagca
tcctattctgggaggaacagtatggtgcaaataggcaaggaagtgctcct
tgatagccagtatccccctacccaccccccctcaattcttccatgcaggt
ttggttcaggttggtgtttgaacttagagggaggcacagaaaccaaaaat
caagtgctcatcaactctatcctgaaaggactagcttcaaaccactccac
atactgtctttagggggtttctgtgagcttggctggggtctgagactggg
gattaactgagaacctgggaatcttggcaggattccaagagtaaagccag
ggagggccctacccaatgtttccccaagaggctctttttttttttttttt
tttttttttttttttcctttcctctgtaccacacctctctctggctccac
atccttcccccagtgcaggtgacctcggtggccaggcctttctgaggact
actcaggtcccataaagctctgtgcactaaaatgtggttagcttcatcac
ttcttcatgcctggtacctactgggcagattctgcaaagtaaatgttcat
tttggaatccgcttccatctgattcataagcaaccccccccccacacaca
cacacacacacacactcacacacagactagggaacactggaagtcggcct
tcagtgcctgggagtttcagcgagaagctcttaggctgggattttttccg
ccaggttggagctaatcacttgtcacagtgcctaatgacacagcctggct
gggtgacaccttttttttttttttaatttttattatttttttttaaattt
aaaatcattattcccttattcacaggtcagtgggcgactagatcaggcag
ttcatttccaacagaggatgccccaaaagttagctttctcccttcaggtt
tcaccgcttcccctcccccttcctgcacgccccgcgcctctctgctaggg
attggaggcacggactacctctccttgccccccgaaatcgtttctgaaca
ttcagccgaagtctcaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatatatgatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
aggacccagatgtagctgtctctgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccatgagctaaagggatcttcaactcta
taggtggaacaacattatgactaaccagtacccttgagctctgactctag
ctgcatatgtatcaaaggatgcctagtcgccatcactggaaagaaggcca
tgaccgcgactttggtgctcgtcaaggtacgcaagccaagggggggagag
tggctggtacatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62622908_62623992
seq2: B6Ng01-068I16.b_56_1122

seq1  CAAGGCAAGGGTAAAGCCTCAGGGTCTACTGGGAGCAAAATTCCAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAGGGTAAAGCCTCAGGGTCTACTGGGAGCAAAATTCCAGAGCA  50

seq1  TCCTATTCTGGGAGGAACAGTATGGTGCAAATAGGCAAGGAAGTGCTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTCTGGGAGGAACAGTATGGTGCAAATAGGCAAGGAAGTGCTCCT  100

seq1  TGATAGCCAGTATCCCCCTACCCACCCCCCCTCAATTCTTCCATGCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGCCAGTATCCCCCTACCCACCCCCCCTCAATTCTTCCATGCAGGT  150

seq1  TTGGTTCAGGTTGGTGTTTGAACTTAGAGGGAGGCACAGAAACCAAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCAGGTTGGTGTTTGAACTTAGAGGGAGGCACAGAAACCAAAAAT  200

seq1  CAAGTGCTCATCAACTCTATCCTGAAAGGACTAGCTTCAAACCACTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTCATCAACTCTATCCTGAAAGGACTAGCTTCAAACCACTCCAC  250

seq1  ATACTGTCTTTAGGGGGTTTCTGTGAGCTTGGCTGGGGTCTGAGACTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTCTTTAGGGGGTTTCTGTGAGCTTGGCTGGGGTCTGAGACTGGG  300

seq1  GATTAACTGAGAACCTGGGAATCTTGGCAGGATTCCAAGAGTAAAGCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAACTGAGAACCTGGGAATCTTGGCAGGATTCCAAGAGTAAAGCCAG  350

seq1  GGAGGGCCCTACCCAATGTTTCCCCAAGAGGCTCTTTTTTTTTTTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCCCTACCCAATGTTTCCCCAAGAGGCTCTTTTTTTTTTTTTTTT  400

seq1  TTTTTTTTTTTTTTTCCTTTCCTCTGTACCACACCTCTCTCTGGCTCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTCCTTTCCTCTGTACCACACCTCTCTCTGGCTCCAC  450

seq1  ATCCTTCCCCCAGTGCAGGTGACCTCGGTGGCCAGGCCTTTCTGAGGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCCCCAGTGCAGGTGACCTCGGTGGCCAGGCCTTTCTGAGGACT  500

seq1  ACTCAGGTCCCATAAAGCTCTGTGCACTAAAATGTGGTTAGCTTCATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTCCCATAAAGCTCTGTGCACTAAAATGTGGTTAGCTTCATCAC  550

seq1  TTCTTCATGCCTGGTACCTACTGGGCAGATTCTGCAAAGTAAATGTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATGCCTGGTACCTACTGGGCAGATTCTGCAAAGTAAATGTTCAT  600

seq1  TTTGGAATCCGCTTCCATCTGATTCATAAGCAA-CCCCCCCCCACACACA  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTGGAATCCGCTTCCATCTGATTCATAAGCAACCCCCCCCCCACACACA  650

seq1  CACACACACACACACTCACACACAGACTAGGGAACACTGGAAGTCGGCCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACTCACACACAGACTAGGGAACACTGGAAGTCGGCCT  700

seq1  TCAGTGCCTGGGAGTTTCAGCGAGAAGCTCTTAGGCTGGGATTTTTTCCG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCCTGGGAGTTTCAGCGAGAAGCTCTTAGGCTGGGATTTTTTCCG  750

seq1  CCAGGTTGGAGCTAATCACTTGTCACAGTGCCTAATGACACAGCCTGGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTGGAGCTAATCACTTGTCACAGTGCCTAATGACACAGCCTGGCT  800

seq1  GGGTGACACCTTTTTTTTTTTTTTAATTTTTATTATTTTTTTTTAAATTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGACACCTTTTTTTTTTTTTTAATTTTTATTATTTTTTTTTAAATTT  850

seq1  -AAATCATTATTCCCTTATTCACAGGTCAGTGGGCGACTAGATCAGGCAG  898
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTATTCCCTTATTCACAGGTCAGTGGGCGACTAGATCAGGCAG  900

seq1  TTCATTTCCAACAGAGGGATGCCCCAGAAGTTAGCTTTCTCCCTTCAGGT  948
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  TTCATTTCCAACAGA-GGATGCCCCAAAAGTTAGCTTTCTCCCTTCAGGT  949

seq1  TTTCCACCGCTTCCCCTCCCCCCTTCCTGCAACGCCCCCGCGCCTCCTCT  998
      ||  ||||||||||||| |||||||||||| ||| |||||||||| ||||
seq2  TT--CACCGCTTCCCCT-CCCCCTTCCTGC-ACG-CCCCGCGCCT-CTCT  993

seq1  GCTTAGGGATTTGTAGGCACGGCGCTAACCCTCTCCTTGCGCCCGCGGAA  1048
      || |||||| ||| ||||||||  |||  ||||||||||| ||| ||  |
seq2  GC-TAGGGA-TTGGAGGCACGG-ACTA--CCTCTCCTTGC-CCCCCG--A  1035

seq1  AATCGGTTCTCTGAACACATCCAGCCCGAAGTCTCAA  1085
      |||||  | |||||  |||| ||| ||||||||||||
seq2  AATCG--TTTCTGA--ACATTCAG-CCGAAGTCTCAA  1067