BAC Information

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BAC

Clone NameB6Ng01-068N02
Chromosome12 (Build37)
Map Location 89,127,516 - 89,283,691
singlet/doubletdoublet
Overlap geneLOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039191, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129
Upstream geneLOC100042650, 6430527G18Rik, 2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042
Downstream geneLOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068N02.bB6Ng01-068N02.g
ACCDH887297DH887298
length1,1231,065
definitionDH887297|Mus musculus domesticus DNA, BAC clone: B6Ng01-068N02, 5' end.DH887298|Mus musculus domesticus DNA, BAC clone: B6Ng01-068N02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,282,562 - 89,283,691)(89,127,516 - 89,128,586)
sequence
gaattcctactgaattctaagtttgttgggttcaaggattttctaggatg
ttggaacactgggggaaggcttagctatgtcagaattaaatctttaaagg
cacttctaataaaacaatacgaaaagagagcacgtggatccatacaccag
actaacgcagtgatagggtatgagtatatgggttatgagaatgccaaggt
tccaggaggttgagtttctctgaaactcttcttggtgagagcgtccaggg
ctcccagcctgtcaagcaggcttcaatggagtgtgcatagcagggaagaa
cttgaagggttatataatcccactgcatatatggctggcttctgatgaaa
gacttcacatgtgtcatataagtgaaaatcttgacaaactggctgaagca
ctttccattgctgatcagaaggttggtcttttacagtttgccgaatgttc
tttcaatctgtgagcctacatcagattacctcaggtccagagggacacta
acatgtgtgtgtatggtgatggcagaagggtctaggtgcagcgaaagagg
tgtgaggaggtgaagcagctgaagcagcataaggagttccagggcttaga
ggaagtgacagagaagagtaccagagtagccctgggtcatcaggaaaagt
tgaaagctgaccatggggtgagagcccagattctcaacctataggtagga
gtggcagagtagcactgagtgaagcaggcagagcaggaacagattcagaa
ggaggaaggccaggtccatttgcaccacctaaaccccctgcaagaggagg
tcctgcagctcaacatgcacctggatgcctccagtcagtacaaagatctg
ctgaatgtgcatcttctaagaggaggagtgagacagataagacgattctt
tctttctcagtttttctgtgtagccctggatgccctagaactccttctat
acaccaggctgtctagatcagatacccacttgcctctgcttcccaattca
aaggcagaagagaagtgctgtggctcacatttggcagagcttgaaaaatt
tatatatacttatcatatatttcctcaaacctcacttccaaagggactaa
ctcctccaacaagggcacacctc
gaattcctctttgcatatgcatgtgtacacatgtgatgtgtatttgtgtg
tgcttgtgtgtgcaggtgcacatgttggaggtgctcttctccacaagtgt
ccatactctgttctttctacccatctttcaaggaagggatgactttgtag
gattctcaagggatgcttggctaccaagtgatggattccaaggttgaaca
aaagtacaactttctaaaacccatatttgggatgatctctttctatgctg
ccaccagccagctccagtggccctatagataccagcagaaggctcatgct
catggcttaagtgatggctggcacagatcttaaacatggagcctctctca
gatgtgacgtccactctcctgtttgacttcttggagttgtgtgggaatgc
cctcatgaagcagtaccaagtccagttctggaaaatcatgcttctcatcc
ccgaggactacttgcccagaattgaagccatcacgagctcagggtccttc
atacctctcaagcagttcttggagaaatgtctgcatggcagtgaggttcc
tgtccccagagcctttctgatgtccaccgtctgcccctcttgatgccctt
catcctactgtgtggcagaaggggcagtagtaaagccactgagaaagaga
atttggaagaatcatgtaagattgagaaatttgttagtgtgtttttatat
atctgtaccttgtgaatgagtcttttagggctggttacatggctcagtgt
tgagcaataatgaatcttccagagttcttgagttcaattcccagcaaaca
cagggtggctcacaaccatctataatgggatcctatgcactgtctcatga
gtatctgaaaacaactgcagtgtacaattagaaataaaaataataaatct
ttttttttttaaatgaggcttttgtacttcacagcccttggtaggtctgt
tcaagtttggtagttctacagtgtcacagacaatacaaacctgtctttct
aatttcacaagctacaggaagggtaagaaataaaactcctgggccatata
gcttaacaatagctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89282562_89283691
seq2: B6Ng01-068N02.b_45_1167 (reverse)

seq1  GAGGTGTGGCCTTGTTGGAGGAGTTATGTCCCTGTGGAGTCGAGGTTTTG  50
      |||||||| ||||||||||||||||| |||||| ||||   |||| ||||
seq2  GAGGTGTGCCCTTGTTGGAGGAGTTA-GTCCCTTTGGAAGTGAGG-TTTG  48

seq1  AGGAAATATATGTATATGTATATATATATTTTTTCAAGCTCTGCCAAATG  100
      |||||||||||| ||| ||||||||| | |||||||||||||||||||||
seq2  AGGAAATATATG-ATAAGTATATATA-AATTTTTCAAGCTCTGCCAAATG  96

seq1  TGAGCCACAGCACTCTCCTTTCTGCCTTTGAATTGGGAAGCAGAGGCAAG  150
      |||||||||||||| ||  |||||||||||||||||||||||||||||||
seq2  TGAGCCACAGCACT-TCTCTTCTGCCTTTGAATTGGGAAGCAGAGGCAAG  145

seq1  TGGGTATCTGATCTAGGACAGCCTGGTGTATAGAAGGAGTTCTAGGGCAT  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGGTATCTGATCTA-GACAGCCTGGTGTATAGAAGGAGTTCTAGGGCAT  194

seq1  CCAGGGCTACACAGAAAAACTGAGAAAGAAAGAATCGTCTTATCTGTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACACAGAAAAACTGAGAAAGAAAGAATCGTCTTATCTGTCTC  244

seq1  ACTCCTCCTTCTTAGAAGATGCACATTCAGCAGATCTTTGTACTGACTGG  300
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCC-TCTTAGAAGATGCACATTCAGCAGATCTTTGTACTGACTGG  293

seq1  AGGCATCCAGGTGCATGTTGAGCTGCAGGACCTCCTCTTGCAGGGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCAGGTGCATGTTGAGCTGCAGGACCTCCTCTTGCAGGGGGTTT  343

seq1  AGGTGGTGCAAATGGACCTGGCCTTCCTCCTTCTGAATCTGTTCCTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTGCAAATGGACCTGGCCTTCCTCCTTCTGAATCTGTTCCTGCTC  393

seq1  TGCCTGCTTCACTCAGTGCTACTCTGCCACTCCTACCTATAGGTTGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTTCACTCAGTGCTACTCTGCCACTCCTACCTATAGGTTGAGAA  443

seq1  TCTGGGCTCTCACCCCATGGTCAGCTTTCAACTTTTCCTGATGACCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTCTCACCCCATGGTCAGCTTTCAACTTTTCCTGATGACCCAGG  493

seq1  GCTACTCTGGTACTCTTCTCTGTCACTTCCTCTAAGCCCTGGAACTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCTGGTACTCTTCTCTGTCACTTCCTCTAAGCCCTGGAACTCCTT  543

seq1  ATGCTGCTTCAGCTGCTTCACCTCCTCACACCTCTTTCGCTGCACCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGCTTCAGCTGCTTCACCTCCTCACACCTCTTTCGCTGCACCTAGA  593

seq1  CCCTTCTGCCATCACCATACACACACATGTTAGTGTCCCTCTGGACCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTGCCATCACCATACACACACATGTTAGTGTCCCTCTGGACCTGA  643

seq1  GGTAATCTGATGTAGGCTCACAGATTGAAAGAACATTCGGCAAACTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCTGATGTAGGCTCACAGATTGAAAGAACATTCGGCAAACTGTAA  693

seq1  AAGACCAACCTTCTGATCAGCAATGGAAAGTGCTTCAGCCAGTTTGTCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAACCTTCTGATCAGCAATGGAAAGTGCTTCAGCCAGTTTGTCAA  743

seq1  GATTTTCACTTATATGACACATGTGAAGTCTTTCATCAGAAGCCAGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCACTTATATGACACATGTGAAGTCTTTCATCAGAAGCCAGCCAT  793

seq1  ATATGCAGTGGGATTATATAACCCTTCAAGTTCTTCCCTGCTATGCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAGTGGGATTATATAACCCTTCAAGTTCTTCCCTGCTATGCACAC  843

seq1  TCCATTGAAGCCTGCTTGACAGGCTGGGAGCCCTGGACGCTCTCACCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTGAAGCCTGCTTGACAGGCTGGGAGCCCTGGACGCTCTCACCAAG  893

seq1  AAGAGTTTCAGAGAAACTCAACCTCCTGGAACCTTGGCATTCTCATAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTCAGAGAAACTCAACCTCCTGGAACCTTGGCATTCTCATAACC  943

seq1  CATATACTCATACCCTATCACTGCGTTAGTCTGGTGTATGGATCCACGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACTCATACCCTATCACTGCGTTAGTCTGGTGTATGGATCCACGTG  993

seq1  CTCTCTTTTCGTATTGTTTTATTAGAAGTGCCTTTAAAGATTTAATTCTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTTCGTATTGTTTTATTAGAAGTGCCTTTAAAGATTTAATTCTG  1043

seq1  ACATAGCTAAGCCTTCCCCCAGTGTTCCAACATCCTAGAAAATCCTTGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTAAGCCTTCCCCCAGTGTTCCAACATCCTAGAAAATCCTTGAA  1093

seq1  CCCAACAAACTTAGAATTCAGTAGGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  CCCAACAAACTTAGAATTCAGTAGGAATTC  1123

seq1: chr12_89127516_89128586
seq2: B6Ng01-068N02.g_68_1132

seq1  GAATTCCTCTGTGCATATGCATGTGTACACATGTGATGTGTATTTGTGTG  50
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTTGCATATGCATGTGTACACATGTGATGTGTATTTGTGTG  50

seq1  TGCTTGTGTGTGCAGGTGCACATGTTGGAGGTGCTCTTCTCCACAAGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTGTGTGCAGGTGCACATGTTGGAGGTGCTCTTCTCCACAAGTGT  100

seq1  CCATACTCTGTTCTTTCTACCCATCTTTCAAGGAAGGGATGACTTTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTCTGTTCTTTCTACCCATCTTTCAAGGAAGGGATGACTTTGTAG  150

seq1  GATTCTCAAGGGATGCTTGGCTACCAAGTGATGGATTCCAAGGTTGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCAAGGGATGCTTGGCTACCAAGTGATGGATTCCAAGGTTGAACA  200

seq1  AAAGTACAACTTTCTAAAACCCATATTTGGGATGATCTCTTTCTATGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACAACTTTCTAAAACCCATATTTGGGATGATCTCTTTCTATGCTG  250

seq1  CCACCAGCCAGCTCCAGTGGCCCTATAGATACCAGCAGAAGGCTCATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCCAGCTCCAGTGGCCCTATAGATACCAGCAGAAGGCTCATGCT  300

seq1  CATGGCTTAAGTGATGGCTGGCACAGATCTTAAACATGGAGCCTCTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTTAAGTGATGGCTGGCACAGATCTTAAACATGGAGCCTCTCTCA  350

seq1  GATGTGACGTCCACTCTCCTGTTTGACTTCTTGGAGTTGTGTGGGAATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGACGTCCACTCTCCTGTTTGACTTCTTGGAGTTGTGTGGGAATGC  400

seq1  CCTCATGAAGCAGTACCAAGTCCAGTTCTGGAAAATCATGCTTCTCATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGAAGCAGTACCAAGTCCAGTTCTGGAAAATCATGCTTCTCATCC  450

seq1  CCGAGGACTACTTGCCCAGAATTGAAGCCATCACGAGCTCAGGGTCCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGACTACTTGCCCAGAATTGAAGCCATCACGAGCTCAGGGTCCTTC  500

seq1  ATACCTCTCAAGCAGTTCTTGGAGAAATGTCTGCATGGCAGTGAGGTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTCAAGCAGTTCTTGGAGAAATGTCTGCATGGCAGTGAGGTTCC  550

seq1  TGTCCCCAGAGCCTTTCTGATGTCCACCGTCTGCCCCTCTTGATGCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCAGAGCCTTTCTGATGTCCACCGTCTGCCCCTCTTGATGCCCTT  600

seq1  CATCCTACTGTGTGGCAGAAGGGGCAGTAGTAAAGCCACTGAGAAAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTACTGTGTGGCAGAAGGGGCAGTAGTAAAGCCACTGAGAAAGAGA  650

seq1  ATTTGGAAGAATCATGTAAGATTGAGAAATTTGTTAGTGTGTTTTTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAGAATCATGTAAGATTGAGAAATTTGTTAGTGTGTTTTTATAT  700

seq1  ATCTGTACCTTGTGAATGAGTCTTTTAGGGCTGGTTACATGGCTCAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTACCTTGTGAATGAGTCTTTTAGGGCTGGTTACATGGCTCAGTGT  750

seq1  TGAGCAATAATGAATCTTCCAGAGTTCTTGAGTTCAATTCCCAGCAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAATAATGAATCTTCCAGAGTTCTTGAGTTCAATTCCCAGCAAACA  800

seq1  CAGGGTGGCTCACAACCATCTATAATGGGATCCTATGCACTGTTCTCATG  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGGGTGGCTCACAACCATCTATAATGGGATCCTATGCACTG-TCTCATG  849

seq1  AGTATCTGAAAACAACTGCAGTGTACAATTAGAAATAAAAATAAATAAAT  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTATCTGAAAACAACTGCAGTGTACAATTAGAAATAAAAAT-AATAAAT  898

seq1  C-TTTTTTTTTTAAATGAGGCTTTTGTACTTCACAGCCCTTTGTAGGTCT  949
      | ||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTTTTTTTTTTAAATGAGGCTTTTGTACTTCACAGCCCTTGGTAGGTCT  948

seq1  GTTTCAGGTTTGGTAGTTCTACAGGTGTCACAGACAAATACAAACCTGGC  999
      | |||| |||||||||||||||| ||||||||||| ||||||||||| | 
seq2  G-TTCAAGTTTGGTAGTTCTACA-GTGTCACAGAC-AATACAAACCT-GT  994

seq1  CTTTCTAATTTTCACAAGTCACAAGGAAGGGTAAGAAAATAACACTCCTG  1049
      |||||||| |||||||||  || |||||||||||| |||||| |||||||
seq2  CTTTCTAA-TTTCACAAGCTAC-AGGAAGGGTAAG-AAATAAAACTCCTG  1041

seq1  GG-CATATAGCTAGAC-ATAGCTC  1071
      || |||||||||  || |||||||
seq2  GGCCATATAGCTTAACAATAGCTC  1065