BAC Information

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BAC

Clone NameB6Ng01-069A21
Chromosome11 (Build37)12 (Build37)
Map Location 44,336,447 - 44,337,49377,754,726 - 77,755,251
singlet/doubletsingletsinglet
Overlap gene3732413I11Rik
Upstream geneCcnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b, Il12b, Ublcp1
Downstream geneEbf1, LOC382510
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069A21.bB6Ng01-069A21.g
ACCDH887470DH887471
length1,0421,002
definitionDH887470|Mus musculus domesticus DNA, BAC clone: B6Ng01-069A21, 5' end.DH887471|Mus musculus domesticus DNA, BAC clone: B6Ng01-069A21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,336,447 - 44,337,493)(77,754,726 - 77,755,251)
sequence
gaattctgctgagaaagctaaatacatttctagctttggcagtaatttca
gacattacaggagaagtgaaaacatttatttgtgaggaaattatagtgac
agattgctgtgctagttaagtgtttgtcagtgttccgtccgactctggga
cagtggaactccctagctctgatactttaaactaaaaggaacccggctta
gcacaccattgagaggatattaatggctctctttaatcattcccataatg
ggaatgttgttatatatgtaaacatgctgacaataatacactatggttgt
tttatagataaagcctgtaattccgatgacttgaaatgagagcttttaat
cattttcctatacacaaaaatataccgtgggactaggacagagcaactct
atcctaaggaaaaagctatcacaaagaataacatctctataacctgacat
gactgtaagccacaaagtggagaaacatcaacttaggggacgctcttgct
actcgagccagccctgggtgtccacagggtatctgtgcagtcaataatct
cgcctgaaaatattaaaatgtttgttccaaatacgttcagaccttttctc
gtcactgatccctaaataatacagtataaaaactacctacctagttcaaa
cctagtattaggtgttgtaagtaatctagagatggtttggacatggggtg
ggtgcagctgagatggccctcagcatgtaagagtgccagcagccaagcct
ggaaacccgagtttgatccctagaagctacatggtggaaggaaagaacaa
actcacacaagctgtccagggtcccacccgcaggctgctactgaatgaca
attaatataatttaataaaggcaggcagaaagctctatgccatttatgaa
agggaccttgggtcttgcaggtttgggtatctagagatgtcccacgccct
agagagaacagaagaagcactgcggccttatatatattatatacatatat
acttttatatatacacacatatatatatgttatatatatata
gaattcagaactcttcagctggggaatggtggtaatgaagtgttcccaca
acacagactgttgagaaggattcaactgcgtgaattcagaactcttcagc
tggggaacagggtacccgtaagtatagctttacaaggtaagtctggcctt
gaactttctaatgaaattcaagacagtctatcagaagtaaagtgggaaat
agctttacaaggtatgtttggccttgaactttttctagcgttaggagcct
ttttgttccttttcacatgttatcaagcggttaaggcagggctgaaaatt
ctggatgaaattcaagacaatctatcagaagtaaagcggggagagagagt
aggagcaaagaggaaatatggtacacaaaataagtatacaggcctttcca
cgggtcttgaacccgaggaaaagttaaggtcaggtaagaatacctgggga
gagattggaaggaaggagaaggaaaaagaaaagaaaaaagatcaatcagc
ggaggtttctaggagaaggagcctatactcatcactagatgagctcaagg
agccagttcttaatagttctgaatcagatgaaaaggctattagggcctgg
aaggcgctctcccgagcaggtgaagccactggacaactaacaaagatcgt
ccagggacctcaggagtcgttctcagattttgtggccagaatgacagagg
cagcagagcgtatttttgcagatttggagcaagccgtacctctggtagaa
tagctcatttatgagcaagccaggcaggaatgcagagcggccatagcccc
aagaaagaaaaaaggtttacaagactggctcagggtttgtcgggagcttg
ggggacctctcattatgcgttacttccattcagtatgagaaatttactag
ggcagctaatttgtcaaaaagtctttctcatatatgttacagaattggat
ggctgatttgaacagacacttcgggaattgagaattgcatcattcagtca
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_44336447_44337493
seq2: B6Ng01-069A21.b_46_1087 (reverse)

seq1  TATATATATATATACATATATATATGTGTGTATATATATATGTATATATG  50
      |||||||||||| ||||||||||||||||||||||||| | |||||||||
seq2  TATATATATATA-ACATATATATATGTGTGTATATATAAAAGTATATATG  49

seq1  TATATAATATTATATTAAGGCCGCAGTGCTTCTTCTGTTTCTCTCTAGGG  100
      ||||||||| |||| |||||||||||||||||||||| ||||||||||||
seq2  TATATAATA-TATA-TAAGGCCGCAGTGCTTCTTCTG-TTCTCTCTAGGG  96

seq1  CGTGGGACATCTCTTAGATACCCAAACCTGCAAGACCCAAGGTCCCTTTC  150
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CGTGGGACATCTC-TAGATACCCAAACCTGCAAGACCCAAGGTCCCTTTC  145

seq1  ATAAATGGCATAGAGCTTTCTGCCTGCCTTTATTAAATTATATTAATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGGCATAGAGCTTTCTGCCTGCCTTTATTAAATTATATTAATTGT  195

seq1  CATTCAGTAGCAGCCTGCGGGTGGGACCCTGGACAGCTTGTGTGAGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGTAGCAGCCTGCGGGTGGGACCCTGGACAGCTTGTGTGAGTTTG  245

seq1  TTCTTTCCTTCCACCATGTAGCTTCTAGGGATCAAACTCGGGTTTCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTTCCACCATGTAGCTTCTAGGGATCAAACTCGGGTTTCCAGG  295

seq1  CTTGGCTGCTGGCACTCTTACATGCTGAGGGCCATCTCAGCTGCACCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTGCTGGCACTCTTACATGCTGAGGGCCATCTCAGCTGCACCCAC  345

seq1  CCCATGTCCAAACCATCTCTAGATTACTTACAACACCTAATACTAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTCCAAACCATCTCTAGATTACTTACAACACCTAATACTAGGTTT  395

seq1  GAACTAGGTAGGTAGTTTTTATACTGTATTATTTAGGGATCAGTGACGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAGGTAGGTAGTTTTTATACTGTATTATTTAGGGATCAGTGACGAG  445

seq1  AAAAGGTCTGAACGTATTTGGAACAAACATTTTAATATTTTCAGGCGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCTGAACGTATTTGGAACAAACATTTTAATATTTTCAGGCGAGA  495

seq1  TTATTGACTGCACAGATACCCTGTGGACACCCAGGGCTGGCTCGAGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGACTGCACAGATACCCTGTGGACACCCAGGGCTGGCTCGAGTAGC  545

seq1  AAGAGCGTCCCCTAAGTTGATGTTTCTCCACTTTGTGGCTTACAGTCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCGTCCCCTAAGTTGATGTTTCTCCACTTTGTGGCTTACAGTCATG  595

seq1  TCAGGTTATAGAGATGTTATTCTTTGTGATAGCTTTTTCCTTAGGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTATAGAGATGTTATTCTTTGTGATAGCTTTTTCCTTAGGATAGA  645

seq1  GTTGCTCTGTCCTAGTCCCACGGTATATTTTTGTGTATAGGAAAATGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTCTGTCCTAGTCCCACGGTATATTTTTGTGTATAGGAAAATGATT  695

seq1  AAAAGCTCTCATTTCAAGTCATCGGAATTACAGGCTTTATCTATAAAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCTCATTTCAAGTCATCGGAATTACAGGCTTTATCTATAAAACA  745

seq1  ACCATAGTGTATTATTGTCAGCATGTTTACATATATAACAACATTCCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGTGTATTATTGTCAGCATGTTTACATATATAACAACATTCCCAT  795

seq1  TATGGGAATGATTAAAGAGAGCCATTAATATCCTCTCAATGGTGTGCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAATGATTAAAGAGAGCCATTAATATCCTCTCAATGGTGTGCTAA  845

seq1  GCCGGGTTCCTTTTAGTTTAAAGTATCAGAGCTAGGGAGTTCCACTGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGTTCCTTTTAGTTTAAAGTATCAGAGCTAGGGAGTTCCACTGTCC  895

seq1  CAGAGTCGGACGGAACACTGACAAACACTTAACTAGCACAGCAATCTGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCGGACGGAACACTGACAAACACTTAACTAGCACAGCAATCTGTC  945

seq1  ACTATAATTTCCTCACAAATAAATGTTTTCACTTCTCCTGTAATGTCTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAATTTCCTCACAAATAAATGTTTTCACTTCTCCTGTAATGTCTGA  995

seq1  AATTACTGCCAAAGCTAGAAATGTATTTAGCTTTCTCAGCAGAATTC  1047
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTGCCAAAGCTAGAAATGTATTTAGCTTTCTCAGCAGAATTC  1042

seq1: chr12_77754726_77755251
seq2: B6Ng01-069A21.g_66_591

seq1  GAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCGTA  50
      |||||||||||||||||||||||||||||||||||||||||||||||  |
seq2  GAATTCAGAACTCTTCAGCTGGGGAATGGTGGTAATGAAGTGTTCCCACA  50

seq1  ACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACTGTTGAGAAGGATTCAACTGCGTGAATTCAGAACTCTTCAGC  100

seq1  TGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACAGGGTACCCGTAAGTATAGCTTTACAAGGTAAGTCTGGCCTT  150

seq1  GAACTTTCTAACGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAAT  200
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCTAATGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAAT  200

seq1  AGCTTTACAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGGAGCTC  250
      |||||||||||||||||||||||||||||||| ||||| |||||||||  
seq2  AGCTTTACAAGGTATGTTTGGCCTTGAACTTTTTCTAGCGTTAGGAGCCT  250

seq1  TTTTGTTCCTTTTCACATGTTATCAAGCGGTTAAGGCAGGGCTGAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCCTTTTCACATGTTATCAAGCGGTTAAGGCAGGGCTGAAAATT  300

seq1  CTGGATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGT  350
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  CTGGATGAAATTCAAGACAATCTATCAGAAGTAAAGCGGGGAGAGAGAGT  350

seq1  AGGAGCAAAGAGGAAATATGGTTCACAAAATAAGTATACAGGCCTTTCCA  400
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGAGCAAAGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTTCCA  400

seq1  CGGGTCTTGAACCCGAGGAAAAGTTAAGGTCAGGTAAGAATACCTGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTCTTGAACCCGAGGAAAAGTTAAGGTCAGGTAAGAATACCTGGGGA  450

seq1  GAGATTGGAAGGAAGGAGAAGGAAAAAGAAAAGAAAAAAGATCAATTAGC  500
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGATTGGAAGGAAGGAGAAGGAAAAAGAAAAGAAAAAAGATCAATCAGC  500

seq1  GGAGGTCTCTAGGAGAAGGAGCCTAT  526
      |||||| |||||||||||||||||||
seq2  GGAGGTTTCTAGGAGAAGGAGCCTAT  526