BAC Information

Click to search

BAC

Clone NameB6Ng01-069D10
Chromosome12 (Build37)
Map Location 89,279,052 - 89,280,176
singlet/doubletsinglet
Overlap geneLOC100039191
Upstream gene2310044G17Rik, Zdhhc22, Tmem63c, Ngb, Pomt2, Gstz1, EG625237, Tmed8, Gm263, 4933437F05Rik, AI413782, Ahsa1, Thsd3, Sptlc2, LOC667287, Nrp, 1810035L17Rik, Snw1, LOC100042747, EG544883, EG666806, EG633031, Oog1, LOC100042776, LOC100042778, LOC100042239, LOC100042786, BB287469, LOC100038964, LOC673658, LOC100038992, LOC100038982, LOC674027, LOC100039042, LOC100039052, LOC100039076, LOC100039087, LOC100039100, LOC100039203, LOC627873, LOC100039162, LOC627881, LOC100039129
Downstream geneLOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915, Nrxn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069D10.bB6Ng01-069D10.g
ACCDH887588DH887589
length8111,105
definitionDH887588|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D10, 5' end.DH887589|Mus musculus domesticus DNA, BAC clone: B6Ng01-069D10, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaatacagaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagagaaatgcaaatcaaaacaacactgagat
tccatctcacacaagtaagaaaggctaagataaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagaggatcactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacataatactaccggaggatcctgcaatacctctcctggga
atatatccagaagatgtcccaaccagaaagtaggactcatgttccactat
gttcagagcagtcttatttataatagccagaagctggaaagaacccagat
gccccgcaacagaggaatggatacaaaaaatgtggtacatttacacattg
gagtactactcaactattaaaaagaatgagtttatgaaattcctagggaa
atggatggacctagagggcatcatcctgagtgaggaacacaatcacaaaa
gaactcaaatgatatgttctttttttttttttttttctcttttttttttt
tttcatttttaatccatttttatttttgtttctttcttgagtacagtttt
ttttccattttttattaggtattttagctcatttacatttccaatgctat
accaaaagtcccccttacccacccacccccactcccctacccacccactc
cccccctttgggtctgggtttttccctgttccttgggattcaaaatcctg
cgggtccaatg
gaattctttctgagtcatgatttcagagtattcagtcagagcttgcttgg
ccccacattcttgcaatagggtgggatgaaaccccatgtggaaaaaaaaa
atgaagaggccagtgaaagggatggaatccatcatgacaggcaaaaagag
aggcagcaggaccagaaaccttcctttcttttttatttttttggtttaaa
ccattttttattagatattttttcatttacaattcaaatgctatcctcaa
agcccactataacctccccactccctgctccccaacccacccactcccac
ttcctggctctggcattcccctgtactggggatataatctttgcaagacc
aagggcctctcctcccaatgatggccgattagtccatcttctgttacata
tgcaggtagagacatgagatcggtgttctggttagtttatattgctgttc
ctcctatagggttacagaccccttcagctccttgggtactttctctagtt
cctctattcaaggaggggtctgtgtaccatccaatagatgtctgtgagca
tccacttctgtatttgccaggcactggcatagcctcataagagacagcta
tatcagggtcatgtcagcaaaatcttgctggaatatacaatagtatctgc
gtttggtgactgattatggtatggatccccaggtggggaagtctctggat
ggtccttccttctgtctcagctccaaactttgtctctgtaactccttaca
tggtattttgttccccattctaaggagggacgaagcatccatactttggt
cttccttctccttgagcagcaccctttttagggcagtgcatgagaggaag
tcaaaaccacagagaaatgaaaatagagatatcaattaagtcattgctct
tactgtgcccaatcctcaaacttcgaatgaaatgcagtatggccaaaggc
tcttcacatccaagagtatggaaagtggatttgcagtggagaagacaaat
acatgtttatgatcagctggagaggtggtaaagatgtgctagagtatctt
cagccagaaaaattagaacatgatgactgtaaaatatgtatcttgattac
tcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_89279052_89280176
seq2: B6Ng01-069D10.g_69_1173

seq1  GAATTCTTTCTGAGTCATGATTTCAGAGTATTCAGTCAGAGCTTGCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGAGTCATGATTTCAGAGTATTCAGTCAGAGCTTGCTTGG  50

seq1  CCCCACATTCTTGCAATAGGGTGGGATGAAACCCCATGTGGAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACATTCTTGCAATAGGGTGGGATGAAACCCCATGTGGAAAAAAAAA  100

seq1  ATGAAGAGGCCAGTGAAAGGGATGGAATCCATCATGACAGGCAAAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAGGCCAGTGAAAGGGATGGAATCCATCATGACAGGCAAAAAGAG  150

seq1  AGGCAGCAGGACCAGAAACCTTCCTTTCTTTTTTATTTTTTTGGTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCAGGACCAGAAACCTTCCTTTCTTTTTTATTTTTTTGGTTTAAA  200

seq1  CCATTTTTTATTAGATATTTTTTCATTTACAATTCAAATGCTATCCTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTTATTAGATATTTTTTCATTTACAATTCAAATGCTATCCTCAA  250

seq1  AGCCCACTATAACCTCCCCACTCCCTGCTCCCCAACCCACCCACTCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCACTATAACCTCCCCACTCCCTGCTCCCCAACCCACCCACTCCCAC  300

seq1  TTCCTGGCTCTGGCATTCCCCTGTACTGGGGATATAATCTTTGCAAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCTCTGGCATTCCCCTGTACTGGGGATATAATCTTTGCAAGACC  350

seq1  AAGGGCCTCTCCTCCCAATGATGGCCGATTAGTCCATCTTCTGTTACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCTCTCCTCCCAATGATGGCCGATTAGTCCATCTTCTGTTACATA  400

seq1  TGCAGGTAGAGACATGAGATCGGTGTTCTGGTTAGTTTATATTGCTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTAGAGACATGAGATCGGTGTTCTGGTTAGTTTATATTGCTGTTC  450

seq1  CTCCTATAGGGTTACAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATAGGGTTACAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGTT  500

seq1  CCTCTATTCAAGGAGGGGTCTGTGTACCATCCAATAGATGTCTGTGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATTCAAGGAGGGGTCTGTGTACCATCCAATAGATGTCTGTGAGCA  550

seq1  TCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCATAAGAGACAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCTGTATTTGCCAGGCACTGGCATAGCCTCATAAGAGACAGCTA  600

seq1  TATCAGGGTCATGTCAGCAAAATCTTGCTGGAATATACAATAGTATCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGTCATGTCAGCAAAATCTTGCTGGAATATACAATAGTATCTGC  650

seq1  GTTTGGTGACTGATTATGGTATGGATCCCCAGGTGGGGAAGTCTCTGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGTGACTGATTATGGTATGGATCCCCAGGTGGGGAAGTCTCTGGAT  700

seq1  GGTCCTTCCTTCTGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTCCTTCTGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTACA  750

seq1  TGGTATTTTGTTCCCCATTCTAAGGAGGGACGAAGCATCCATACTTTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTTTGTTCCCCATTCTAAGGAGGGACGAAGCATCCATACTTTGGT  800

seq1  CTTCCTTCTCCTTGAGCAGCAACCTTTTTAGGGCAGTGCATGAGAGGAAG  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTTCCTTCTCCTTGAGCAGCACCCTTTTTAGGGCAGTGCATGAGAGGAAG  850

seq1  TCAAAACCACAGAGAAATGAAAATAGAGATATCAATTAAGTCATTGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCACAGAGAAATGAAAATAGAGATATCAATTAAGTCATTGCTCT  900

seq1  TACTGTGCCCAATCCTCAAACTTCGAATGAAATGCAGTATGGCCAAAGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGCCCAATCCTCAAACTTCGAATGAAATGCAGTATGGCCAAAGGC  950

seq1  TCTTCAACCAATCCAAGAGTATGGACAGTGGATTTGCAGGTGGAGAAGAC  1000
      ||||||    ||||||||||||||| |||||||||||| |||||||||||
seq2  TCTTCA---CATCCAAGAGTATGGAAAGTGGATTTGCA-GTGGAGAAGAC  996

seq1  AAAAATTACAATGTTTATGATCAGGCCTGGAGAGGTGGTAAAGATGTGGC  1050
      |||   ||| ||||||||||||||  ||||||||||||||||||||| ||
seq2  AAA---TAC-ATGTTTATGATCAG--CTGGAGAGGTGGTAAAGATGT-GC  1039

seq1  TCAGAGTATCTACAGGCCCAGTAAAAATCTAGACCATGATGACCTTGTAA  1100
      | ||||||||| |||  |||| |||||| |||| |||||||||  ||| |
seq2  T-AGAGTATCTTCAG--CCAG-AAAAAT-TAGAACATGATGAC--TGT-A  1081

seq1  AAATATGTATCTTGATTATCTCAAA  1125
      |||||||||||||||||| ||||||
seq2  AAATATGTATCTTGATTA-CTCAAA  1105