BAC Information

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BAC

Clone NameB6Ng01-069P04
Chromosome12 (Build37)
Map Location 35,659,572 - 35,660,618
singlet/doubletsinglet
Overlap genenone
Upstream geneHdac9, 4921508M14Rik
Downstream genePrps1l1, Snx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069P04.bB6Ng01-069P04.g
ACCDH888098DH888099
length1,0411,017
definitionDH888098|Mus musculus domesticus DNA, BAC clone: B6Ng01-069P04, 5' end.DH888099|Mus musculus domesticus DNA, BAC clone: B6Ng01-069P04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttacccactcacagaccctctttttctcatgtctacagaaag
agtaaagcagattgacaccaataagctgtttcttgtttttttcattgtag
tttatttgaaacaggagctcatgaattgaattgataagaagtaaattaac
atataaggatatgaagcagaatgtatttacacaaaaagtgactgttggta
aagtaaactgctaaagtcaacaacagtcacaaagtaacatttattgtaaa
gatgaatttacagaaggtggtgtatacagcatacatttattgtatgcatt
cagtatgttagtgtagggcaggagaataaagtacatctaattgtaactct
cgtttccaaggggctatcagtcagaaagtttaaattggaatgtagatgtc
cttttcattatcatagaacaaaattataatccctatttatgatgtttagt
tttatgccaactttacacaagctagagtcgtcagagcggcaagagcacca
acggaggcaatgcctccataagacctggctgtagacaagactgtagggta
tattatttttcattagtgattggtgggagagggcccagcccattgtgagt
aatgccatctctgggttggcggttctctataagaaagcaggctgagcaag
ccatagttggcagaccagtaagcagtactcttccatggcctctgcatcac
cagcctcaaagtccctgatcttagttcctgtcctgacttccttcagtgat
aaacagagagtataaattaaataagcccttttctccctaacttgatcttg
gttctgatatttgatcacagcaatagtaacccgaaggaagacactatcct
aaacccatctcatcactgtgagcactttctattagttctcagactattga
tttctattatttctattaacaagatcccgagattgatccattgacagcct
ctactgccagttatcctcagatggcttttcaccaaggacactggtacttc
acatttcgggaggaatatggagggttagctcaagctgactg
gaattctctgtttagttctatactccaatttttgattggattgtttggtt
tctttgtggttagcttcttgagttctttatatatcttggatattagccct
ctatcagatgtggggttagtgaagatcttttccccatctataggttcctg
atttgtcctattgactgtgtcctttgccttacagctttccagtttcaaca
cagacacaaaaccgtagacatgcaatttgtcctgcctatgagatgtgcaa
agtgaaagatggaatagaatttgagagaaggcccaaaaactgtttggccc
agcttgagactgtgtcataagagggagcacattcctgacactagtaatga
tattcttctacacttatagacagaagcccagcactcccagcatcagagag
gcttcattgatggaaacagatgcacaaacccacagccaaacaatgggcag
agtttggggaatcctgtggaagagggggaggaagaattgaaggagccaga
ggggacatggacaacacaagaaaacctacagaatcaactaacctaggcca
acaggggctcagagactgaatcagaaagcatgcatggaactgacctaggc
cctctgcacatatgtaacagttgtgcagctgggtttttatatggggttcc
taaagtaggagcagggtctgtctctgactatactgcctgccttttgagtc
cctttcccctagctggggctgaactgtctagccttagcagaagactgttg
tgtatggccctgttatgtgatggacctaatctgactgcaacttgttatgc
caagtttggttgaatatccttgagaaagtaactcaatttgtgatatgtag
agagtatcttagttacttttctattgtgccaaaacaccacagtcaagcca
gcttattagcagaaagtgattaattggggcttagggtttcagagggtaga
gtccatgatgcataactaaggtaggtgtcgaaacagcttcaaactttttc
tggaaccaggagcagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35659572_35660618
seq2: B6Ng01-069P04.b_49_1089

seq1  GAATTCACTTACCCACTCACAGACCCTCTTTTTCTCATGTCTACAGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTACCCACTCACAGACCCTCTTTTTCTCATGTCTACAGAAAG  50

seq1  AGTAAAGCAGATTGACACCAATAAGCTGTTTCTTGTTTTTTTCATTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCAGATTGACACCAATAAGCTGTTTCTTGTTTTTTTCATTGTAG  100

seq1  TTTATTTGAAACAGGAGCTCATGAATTGAATTGATAAGAAGTAAATTAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGAAACAGGAGCTCATGAATTGAATTGATAAGAAGTAAATTAAC  150

seq1  ATATAAGGATATGAAGCAGAATGTATTTACACAAAAAGTGACTGTTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGATATGAAGCAGAATGTATTTACACAAAAAGTGACTGTTGGTA  200

seq1  AAGTAAACTGCTAAAGTCAACAACAGTCACAAAGTAACATTTATTGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACTGCTAAAGTCAACAACAGTCACAAAGTAACATTTATTGTAAA  250

seq1  GATGAATTTACAGAAGGTGGTGTATACAGCATACATTTATTGTATGCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTTACAGAAGGTGGTGTATACAGCATACATTTATTGTATGCATT  300

seq1  CAGTATGTTAGTGTAGGGCAGGAGAATAAAGTACATCTAATTGTAACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATGTTAGTGTAGGGCAGGAGAATAAAGTACATCTAATTGTAACTCT  350

seq1  CGTTTCCAAGGGGCTATCAGTCAGAAAGTTTAAATTGGAATGTAGATGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCAAGGGGCTATCAGTCAGAAAGTTTAAATTGGAATGTAGATGTC  400

seq1  CTTTTCATTATCATAGAACAAAATTATAATCCCTATTTATGATGTTTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATTATCATAGAACAAAATTATAATCCCTATTTATGATGTTTAGT  450

seq1  TTTATGCCAACTTTACACAAGCTAGAGTCGTCAGAGCGGCAAGAGCACCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCCAACTTTACACAAGCTAGAGTCGTCAGAGCGGCAAGAGCACCA  500

seq1  ACGGAGGCAATGCCTCCATAAGACCTGGCTGTAGACAAGACTGTAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGCAATGCCTCCATAAGACCTGGCTGTAGACAAGACTGTAGGGTA  550

seq1  TATTATTTTTCATTAGTGATTGGTGGGAGAGGGCCCAGCCCATTGTGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTTCATTAGTGATTGGTGGGAGAGGGCCCAGCCCATTGTGAGT  600

seq1  AATGCCATCTCTGGGTTGGCGGTTCTCTATAAGAAAGCAGGCTGAGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCATCTCTGGGTTGGCGGTTCTCTATAAGAAAGCAGGCTGAGCAAG  650

seq1  CCATAGTTGGCAGACCAGTAAGCAGTACTCTTCCATGGCCTCTGCATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGTTGGCAGACCAGTAAGCAGTACTCTTCCATGGCCTCTGCATCAC  700

seq1  CAGCCTCAAAGTCCCTGATCTTAGTTCCTGTCCTGACTTCCTTCAGTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAAAGTCCCTGATCTTAGTTCCTGTCCTGACTTCCTTCAGTGAT  750

seq1  AAACAGAGAGTATAAATTAAATAAGCCCTTTTCTCCCTAACTTGATCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGAGTATAAATTAAATAAGCCCTTTTCTCCCTAACTTGATCTTG  800

seq1  GTTCTGATATTTGATCACAGCAATAGTAACCCGAAGGAAGACACTAATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTTCTGATATTTGATCACAGCAATAGTAACCCGAAGGAAGACACT-ATCC  849

seq1  TAAAACCCATCTCATCACTGTGAGCACTTTCTAGTAGTTTCTCAGACTAT  900
      | ||||||||||||||||||||||||||||||| ||| ||||||||||||
seq2  T-AAACCCATCTCATCACTGTGAGCACTTTCTATTAG-TTCTCAGACTAT  897

seq1  TGATTTCTATTATTTCTATTAACAAGATCCCGAAGATTGATCCATTGACA  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGATTTCTATTATTTCTATTAACAAGATCCCG-AGATTGATCCATTGACA  946

seq1  GCCTCTACTGCCAGTTATCACTCAAGATGGCTTTTCACCAAGGACACTGG  1000
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  GCCTCTACTGCCAGTTATC-CTC-AGATGGCTTTTCACCAAGGACACTGG  994

seq1  TACTTCACCATTCGGGAGGAGATAT-GAGGGTTGGCTCATGCTGACTG  1047
      ||||||||  |||||||||| |||| ||||||| ||||| ||||||||
seq2  TACTTCACATTTCGGGAGGA-ATATGGAGGGTTAGCTCAAGCTGACTG  1041