BAC Information

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BAC

Clone NameB6Ng01-070I15
Chromosome12 (Build37)
Map Location 78,861,335 - 79,036,640
singlet/doubletdoublet
Overlap geneLOC666659
Upstream geneChurc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8, LOC230765
Downstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070I15.bB6Ng01-070I15.g
ACCDH888514DH888515
length1,0171,181
definitionDH888514|Mus musculus domesticus DNA, BAC clone: B6Ng01-070I15, 5' end.DH888515|Mus musculus domesticus DNA, BAC clone: B6Ng01-070I15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,035,621 - 79,036,640)(78,861,335 - 78,862,534)
sequence
gaattcaacccaaactgaaaacgtaaaacctctctctattcttccttgtg
ttgaacagtaactgaacctttgactcttctctcttttctgtctgtctctt
tctccctctccctccctcccctccccctcctcttcctccttcttcctctc
tctgtgtccctgtctctctctttctgtttctttgtctctcaatctctgtc
tctctctctcaatctctgtctctctcaacctctctctgtctctctcttgc
ttgctcactctccccagctgagcagcttaaagtctgctgtgttcacaccg
agttctgaggggcagccaaggacgagatggagctcattttcagagcacag
agaccgacttttctggtacacttccttgatgttcttctcatgtttgccca
gtactgtgagaaatctgagcctatagggctggagtgtctattagaatttt
gactccctgcttggtaaagaatgggacttgttttcaatctagaaggcgag
ggaaggagaaacgagccagcaatttcaaatgtcatctattctctggtctc
cagatgtctaaggcacttagtaggaagctattcactcactcactcactca
ctcactcactcactcactcactcagtcacccacttcattcattcattcat
tcattcaattcattcattcattcattttaagtttttcactcaggattata
gtagccctgggggaaggctggtctgacaggctttgattagaactggtttc
ttcggcagtttcttctttggttttgctagctttgattctcccattacttt
tcttcattttcatcttttattaaatataaatgattatctagggtttaaca
gaagtctgcagagcctccaatgtagaagaatacagaaaaataatacaaac
ctttaaaatggggaaagttaggggggtttgtggtgtagtgggaagtgtca
aatgaatggaaatacgctagattgggccatggcaaaagtaattcctgtga
ggatatcctatataaaa
gaattcttaacaaacatcttccacaaagaaggtcatgaggaagaggcccc
tttctcatctgagttttaccatgtgcctggcttattagcgggtgctaaga
attgtttctggcccttgaccagctgagctatctctccagctctcatgatt
attttcaatgttttaatgcatgaatatgagaagcaaagttaatttgcaaa
tccaagatgttcctctggttgaatgatgacagtatgggtggtcaagcata
tcggggagtcaggaatgagggggcacctctcaggaggtcaaatagcctca
ccttggggtcaggagaagtttaggggaagaagaaatacttaaagagagag
ccgagggggaaagagaagcatgtagataatccgcaggatgggaactagtg
aggggctgggaagaggaagtgtgtgctgcaggcaaggggaccagctttgt
aaaatctggaagaaaagttcaagcaaattgtcaaagtaaatagatttcgg
tatagcaggggtagcatgtgactattggtgtgaaaggtcagaggtcagga
caatgtctcagggtaaaatgattcatctgatgtggggatccaggcattat
tggtctccgtgtccctgacagccatactcttgccctggctccatagtcag
acaagtgtgctcctctagctcttgactctgggccaggccacactgtttgt
cttggtcattggcgagtatgtagaagtaaccatgtgccacccgaagccca
gcttaagagattttgagtatttccatttgtccctgcacctctgcatttgc
catgagaacaacaggcctcagccaacatgctgagcacagtaggaagattg
gaaacaaatggaacagagccaccccagctgtgcagcctgaagcagagccc
agctgctcccaaaccataagggagaacgagatgttttggtttggatgcct
ctgtgatgtgagtctgcagcatctacatgttatgtagccatggctaactg
aagagacagccaccactagaaagagatgagcagaggactgctgtgattga
acgagatcagactcagaagttccaggacaccgagagccttgctagaagta
aaatgcctgtggtgtcctaatggataccctcttcactgaatgggaaacat
aggagagtatcgtttgtggggtctgaggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79035621_79036640
seq2: B6Ng01-070I15.b_45_1061 (reverse)

seq1  TTTTAT---GGATATCCTCACAGAGAACTACATTTTGCACCTGGCCCTAC  47
      ||||||   |||||||||||||| ||| ||| |||||| | |||||| | 
seq2  TTTTATATAGGATATCCTCACAG-GAATTAC-TTTTGC-CATGGCCC-AA  46

seq1  TCTTGCAGTATCTCCATTTCATTTGAACACCTCCCACTACA-CACACACC  96
      ||| || |||| |||| |||||||| |||| |||||||||| |||| |||
seq2  TCTAGC-GTATTTCCA-TTCATTTG-ACACTTCCCACTACACCACAAACC  93

seq1  CCCCTAACTTTCCCCATTTTAAAGGTTTGTATTATTTTTCTGTATTCTTC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAACTTTCCCCATTTTAAAGGTTTGTATTATTTTTCTGTATTCTTC  143

seq1  TACATTGGAGGCTCTGCAGACTTCTGTTAAACCCTAGATAATCATTTATA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGAGGCTCTGCAGACTTCTGTTAAACCCTAGATAATCATTTATA  193

seq1  TTTAATAAAAGATGAAAATGAAGAAAAGTAATGGGAGAATCAAAGCTAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAAGATGAAAATGAAGAAAAGTAATGGGAGAATCAAAGCTAGC  243

seq1  AAAACCAAAGAAGAAACTGCCGAAGAAACCAGTTCTAATCAAAGCCTGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCAAAGAAGAAACTGCCGAAGAAACCAGTTCTAATCAAAGCCTGTC  293

seq1  AGACCAGCCTTCCCCCAGGGCTACTATAATCCTGAGTGAAAAACTTAAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGCCTTCCCCCAGGGCTACTATAATCCTGAGTGAAAAACTTAAAA  343

seq1  TGAATGAATGAATGAATTGAATGAATGAATGAATGAATGAAGTGGGTGAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGAATGAATTGAATGAATGAATGAATGAATGAAGTGGGTGAC  393

seq1  TGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAATAGCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAGTGAATAGCTT  443

seq1  CCTACTAAGTGCCTTAGACATCTGGAGACCAGAGAATAGATGACATTTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTAAGTGCCTTAGACATCTGGAGACCAGAGAATAGATGACATTTGA  493

seq1  AATTGCTGGCTCGTTTCTCCTTCCCTCGCCTTCTAGATTGAAAACAAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGGCTCGTTTCTCCTTCCCTCGCCTTCTAGATTGAAAACAAGTC  543

seq1  CCATTCTTTACCAAGCAGGGAGTCAAAATTCTAATAGACACTCCAGCCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTTTACCAAGCAGGGAGTCAAAATTCTAATAGACACTCCAGCCCT  593

seq1  ATAGGCTCAGATTTCTCACAGTACTGGGCAAACATGAGAAGAACATCAAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTCAGATTTCTCACAGTACTGGGCAAACATGAGAAGAACATCAAG  643

seq1  GAAGTGTACCAGAAAAGTCGGTCTCTGTGCTCTGAAAATGAGCTCCATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTACCAGAAAAGTCGGTCTCTGTGCTCTGAAAATGAGCTCCATCT  693

seq1  CGTCCTTGGCTGCCCCTCAGAACTCGGTGTGAACACAGCAGACTTTAAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTTGGCTGCCCCTCAGAACTCGGTGTGAACACAGCAGACTTTAAGC  743

seq1  TGCTCAGCTGGGGAGAGTGAGCAAGCAAGAGAGAGACAGAGAGAGGTTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCTGGGGAGAGTGAGCAAGCAAGAGAGAGACAGAGAGAGGTTGA  793

seq1  GAGAGACAGAGATTGAGAGAGAGAGACAGAGATTGAGAGACAAAGAAACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAGATTGAGAGAGAGAGACAGAGATTGAGAGACAAAGAAACA  843

seq1  GAAAGAGAGAGACAGGGACACAGAGAGAGGAAGAAGGAGGAAGAGGAGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGAGACAGGGACACAGAGAGAGGAAGAAGGAGGAAGAGGAGGG  893

seq1  GGAGGGGAGGGAGGGAGAGGGAGAAAGAGACAGACAGAAAAGAGAGAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGAGGGAGGGAGAGGGAGAAAGAGACAGACAGAAAAGAGAGAAGA  943

seq1  GTCAAAGGTTCAGTTACTGTTCAACACAAGGAAGAATAGAGAGAGGTTTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGGTTCAGTTACTGTTCAACACAAGGAAGAATAGAGAGAGGTTTT  993

seq1  ACGTTTTCAGTTTGGGTTGAATTC  1020
      ||||||||||||||||||||||||
seq2  ACGTTTTCAGTTTGGGTTGAATTC  1017

seq1: chr12_78861335_78862534
seq2: B6Ng01-070I15.g_66_1246

seq1  GAATTCTTAACAAACATCTTCCACAAAGAAGGTCATGAGGAAGAGGCCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACAAACATCTTCCACAAAGAAGGTCATGAGGAAGAGGCCCC  50

seq1  TTTCTCATCTGAGTTTTACCATGTGCCTGGCTTATTAGCGGGTGCTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATCTGAGTTTTACCATGTGCCTGGCTTATTAGCGGGTGCTAAGA  100

seq1  ATTGTTTCTGGCCCTTGACCAGCTGAGCTATCTCTCCAGCTCTCATGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTCTGGCCCTTGACCAGCTGAGCTATCTCTCCAGCTCTCATGATT  150

seq1  ATTTTCAATGTTTTAATGCATGAATATGAGAAGCAAAGTTAATTTGCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATGTTTTAATGCATGAATATGAGAAGCAAAGTTAATTTGCAAA  200

seq1  TCCAAGATGTTCCTCTGGTTGAATGATGACAGTATGGGTGGTCAAGCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATGTTCCTCTGGTTGAATGATGACAGTATGGGTGGTCAAGCATA  250

seq1  TCGGGGAGTCAGGAATGAGGGGGCACCTCTCAGGAGGTCAAATAGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGAGTCAGGAATGAGGGGGCACCTCTCAGGAGGTCAAATAGCCTCA  300

seq1  CCTTGGGGTCAGGAGAAGTTTAGGGGAAGAAGAAATACTTAAAGAGAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGGTCAGGAGAAGTTTAGGGGAAGAAGAAATACTTAAAGAGAGAG  350

seq1  CCGAGGGGGAAAGAGAAGCATGTAGATAATCCGCAGGATGGGAACTAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGGGAAAGAGAAGCATGTAGATAATCCGCAGGATGGGAACTAGTG  400

seq1  AGGGGCTGGGAAGAGGAAGTGTGTGCTGCAGGCAAGGGGACCAGCTTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGGAAGAGGAAGTGTGTGCTGCAGGCAAGGGGACCAGCTTTGT  450

seq1  AAAATCTGGAAGAAAAGTTCAAGCAAATTGTCAAAGTAAATAGATTTCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTGGAAGAAAAGTTCAAGCAAATTGTCAAAGTAAATAGATTTCGG  500

seq1  TATAGCAGGGGTAGCATGTGACTATTGGTGTGAAAGGTCAGAGGTCAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAGGGGTAGCATGTGACTATTGGTGTGAAAGGTCAGAGGTCAGGA  550

seq1  CAATGTCTCAGGGTAAAATGATTCATCTGATGTGGGGATCCAGGCATTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTCAGGGTAAAATGATTCATCTGATGTGGGGATCCAGGCATTAT  600

seq1  TGGTCTCCGTGTCCCTGACAGCCATACTCTTGCCCTGGCTCCATAGTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCGTGTCCCTGACAGCCATACTCTTGCCCTGGCTCCATAGTCAG  650

seq1  ACAAGTGTGCTCCTCTAGCTCTTGACTCTGGGCCAGGCCACACTGTTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTGCTCCTCTAGCTCTTGACTCTGGGCCAGGCCACACTGTTTGT  700

seq1  CTTGGTCATTGGCGAGTATGTAGAAGTAACCATGTGCCACCCGAAGCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCATTGGCGAGTATGTAGAAGTAACCATGTGCCACCCGAAGCCCA  750

seq1  GCTTAAGAGATTTTGAGTATTTCCATTTGTTCCCTGCACCTCTGCATTTG  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTTAAGAGATTTTGAGTATTTCCATTTG-TCCCTGCACCTCTGCATTTG  799

seq1  CCATGAGAACAACAGGCCTCAGCCAACATGCTGAGCACAGTAGGAAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGAACAACAGGCCTCAGCCAACATGCTGAGCACAGTAGGAAGATT  849

seq1  GGAAACAAATGGAACAGAGCCACCCCAGCTGTGCAGCCTGAAGCAGAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAAATGGAACAGAGCCACCCCAGCTGTGCAGCCTGAAGCAGAGCC  899

seq1  CAGCTGCTCCCAAAACCATAAGGGAGAACGAGATGTTTTGGTTTGGATGC  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGCTCCC-AAACCATAAGGGAGAACGAGATGTTTTGGTTTGGATGC  948

seq1  CTCTGTGATGTTGAGTTCTGCAGCATCTACATGTTATTGTAGCCATGGCT  1000
      |||||||||| |||| |||||||||||||||||||| |||||||||||||
seq2  CTCTGTGATG-TGAG-TCTGCAGCATCTACATGTTA-TGTAGCCATGGCT  995

seq1  AACTGAAGAGACAGCCA-CACTAGAAAGAGAATGAGCAAGAGACTGCTGT  1049
      ||||||||||||||||| |||||||||||| |||||||   |||||||||
seq2  AACTGAAGAGACAGCCACCACTAGAAAGAG-ATGAGCAGAGGACTGCTGT  1044

seq1  GATTGACAGAGATCCAGAACTCAGAAGTATCAGGACACCGAAGAAGCTTG  1099
      ||||||  ||||| ||| ||||||||||  |||||||||| |||  ||||
seq2  GATTGAACGAGAT-CAG-ACTCAGAAGTTCCAGGACACCG-AGAGCCTTG  1091

seq1  CTAAGAAGTTAAGAATGCCTGTGGGTGTCTTAATTGGATA-CCTCTTCAC  1148
      || ||||||  | ||||||||| |||||| ||| |||||| |||||||||
seq2  CT-AGAAGT--AAAATGCCTGT-GGTGTCCTAA-TGGATACCCTCTTCAC  1136

seq1  TGAAATGGGGAACATGAGGAAAAGATGTACTGTTGTGTTGGGTCTGAGGC  1198
      || |||||| ||||| |||| |    |||  ||| ||| |||||||||||
seq2  TG-AATGGGAAACAT-AGGAGA----GTATCGTT-TGTGGGGTCTGAGGC  1179

seq1  CT  1200
      ||
seq2  CT  1181