BAC Information

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BAC

Clone NameB6Ng01-070M24
Chromosome12 (Build37)
Map Location 46,771,076 - 46,891,952
singlet/doubletdoublet
Overlap genenone
Upstream geneStxbp6
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070M24.bB6Ng01-070M24.g
ACCDH888692DH888693
length1,1211,152
definitionDH888692|Mus musculus domesticus DNA, BAC clone: B6Ng01-070M24, 5' end.DH888693|Mus musculus domesticus DNA, BAC clone: B6Ng01-070M24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,890,805 - 46,891,952)(46,771,076 - 46,772,239)
sequence
gaattctaagatttcactttgaaaaagtgaagcatgaagacagacttctt
tactttgatacttacaagtcttgaaattctactggaaaacaggacacagg
aagcatttggaaaaccagagggtggctttcagatattacagagtagaact
attaacaaactctagaggaaccttatcttgtgaatctttgccttacattc
tacagcttaaactatcaacatgacacaaaattcctttccctgatcttgga
atctcatatgtaagcaaactgatggatgagaatggctgattttgtgcctg
ttaaatagagtcatgttttcccagatattgacttgtaaacatgtacacat
ttcatatgatccagagagatgctaaagtgaaaagtcctttaatttagata
aattttttaaaatcacacaattgtcatttgaaatgaaaatttctaaaatt
tctaaaataagaatctataggagataataagttcaaatgaaaggatgcaa
ctgataaccttattattttctctttcatccactttaatgttggtgcaata
aaggtaattttttggttatgtattatttttactgataatattcaccttat
ttcatacctacaggataaacaggagagattaaagtgaggtctaaatgctg
gagtcccagtctttcctttccatatgatcttcgtaaaatagatattgcat
aagttacattgatctatgccaaactttattcagcacagaaatatgcttct
aatactatgaaaattaaagctaaacagaaaaaaatctggtgatgattata
gttaatttgatttttcattgacgggaatgaaacttctctatattcacaag
ctgttaaaaagaggagtttataaattccagcttcaaaccgtcctctttta
aaaatgaaaattatgtgtttttgagtgctctttcttttttatatatatat
cttattacattgcaatgctatctgaagttcctataccttccccaccctgc
tccctaccacccactccacttctggccctggcattcccctgtactggggc
atatcacgttgcaatacaggggcctctcgtgccaggattgcgctagcatt
tctactacatatgcagctaga
gaattctctttagcagcaaacagagtaacaaaacagtcgagggggagtga
tcgtgattaaaaagaaatagagtcagggaaacggcactacattatatttt
cctctaaatctaaggcactatacctgaataggagcagagagcagagaagc
aggtatgtagaaagcactcgtccatcctaatatccaaacacactggatgt
aagaaagcaccagctacatgccataagatctaattacccagaattgcctt
tcctgccccacagcaatcattttgatgacaggcttctctgcactgtaaaa
caaaatggggaacctgtgctgtataaactgcctcctgcttttctccttcc
tctgctatcagactctctatctcatttattttccacacattaatggtagc
agtcaccttgagctggtgatgcagagtaattttcacagaaaccttgatca
gaaaccataaatcagcctgatgtgcttttatggtctaataacattccgtt
tgctcctacaggtctgtatgtaaaactgcattgcagtgagtcctctggat
atatttttcccccttttcgcacagctcactcttgctctcatgcacttacc
ctccctccctcctttatccttctccctctcgcctctgtagcgcgatgttt
cctagacatacacaggcacatgcacaccagcaagccacatcagtatactt
aatgtctcacaaaactgcatttaactggtgctacatggatgccaaggtag
cagggatgcaaattctttcagaagggcaaaatgatatgtgtgttagcttc
gcagtggttgttcttaacaatgaagtatctctgaccaaaaatgtggcatt
gaaaggagtcattgggtgtttgtaaatgatttagctccttgtgcttttgt
gaaagcgaatgacgcagctgcacagactgtgccgtggcttggttaacgac
acatgaggttttcctctgtgtgcccatcttctgcagtgtactggttgaaa
gagcctagcacttctcgccccactccctcagaatggtgtgatgtggagtg
gagtggaggctaccacaatggcagaggaaacctgtgtatctcaaagccaa
agggaacttgagtcagtagtgcgaatgaggagaaagtagaactactgggt
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_46890805_46891952
seq2: B6Ng01-070M24.b_43_1163 (reverse)

seq1  TCTAGCTGCATATGTAGTAGAAGATGGCCTAGTTGGCCATCTTTGGGAAG  50
      |||||||||||||||||||||| |||  ||||   || |||  ||| | |
seq2  TCTAGCTGCATATGTAGTAGAA-ATG--CTAG--CGCAATC-CTGGCACG  44

seq1  AGAGGCCCCTTGGTATTGCAAACTTTATATGCCCCAGTACAGGGGAATGC  100
      ||||||||||  ||||||| ||| | ||||||||||||||||||||||||
seq2  AGAGGCCCCT--GTATTGC-AACGTGATATGCCCCAGTACAGGGGAATGC  91

seq1  CAGGGCCAAGAAGTGGGAGTGGGTGGGTAGGGGAGCAGGGTGGGGGAAGG  150
      ||||||| |||||| ||||||||| |||| |||||||||||||||  | |
seq2  CAGGGCC-AGAAGT-GGAGTGGGT-GGTA-GGGAGCAGGGTGGGG--AAG  135

seq1  GTATAGGGAACTTTCAGGATAGCATTTGCAATGTAAATAAAGAATATATA  200
      ||||| ||||| |||| ||||||| ||||||||| |||||   |||||||
seq2  GTATA-GGAAC-TTCA-GATAGCA-TTGCAATGT-AATAAGATATATATA  180

seq1  TAATAAAAAAAGAAAAGAGCACTCAAAAAACACATAATTTTCATTTTTTA  250
      |    ||||||| ||||||||||| |||||||||||||||||| ||||||
seq2  T----AAAAAAG-AAAGAGCACTC-AAAAACACATAATTTTCA-TTTTTA  223

seq1  AAAGAGGACGGTTTGAAGCTGGAATTTATAAACTCCTCTTTTTAACAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGACGGTTTGAAGCTGGAATTTATAAACTCCTCTTTTTAACAGCT  273

seq1  TGTGAATATAGAGAAGTTTCATTCCCGTCAATGAAAAATCAAATTAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATATAGAGAAGTTTCATTCCCGTCAATGAAAAATCAAATTAACTA  323

seq1  TAATCATCACCAGATTTTTTTCTGTTTAGCTTTAATTTTCATAGTATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATCACCAGATTTTTTTCTGTTTAGCTTTAATTTTCATAGTATTAG  373

seq1  AAGCATATTTCTGTGCTGAATAAAGTTTGGCATAGATCAATGTAACTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATTTCTGTGCTGAATAAAGTTTGGCATAGATCAATGTAACTTAT  423

seq1  GCAATATCTATTTTATGAAGATCATATGGAAAGGAAAGACTGGGACTCCA  500
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCAATATCTATTTTACGAAGATCATATGGAAAGGAAAGACTGGGACTCCA  473

seq1  GCATTTAGACCTCACTTTAATCTCTCCTGTTTATCCTGTAGGTATGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTAGACCTCACTTTAATCTCTCCTGTTTATCCTGTAGGTATGAAAT  523

seq1  AAGGTGAATATTATCAGTAAAAATAATACATAACCAAAAAATTACCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGAATATTATCAGTAAAAATAATACATAACCAAAAAATTACCTTTA  573

seq1  TTGCACCAACATTAAAGTGGATGAAAGAGAAAATAATAAGGTTATCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACCAACATTAAAGTGGATGAAAGAGAAAATAATAAGGTTATCAGTT  623

seq1  GCATCCTTTCATTTGAACTTATTATCTCCTATAGATTCTTATTTTAGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTTCATTTGAACTTATTATCTCCTATAGATTCTTATTTTAGAAA  673

seq1  TTTTAGAAATTTTCATTTCAAATGACAATTGTGTGATTTTAAAAAATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAAATTTTCATTTCAAATGACAATTGTGTGATTTTAAAAAATTTA  723

seq1  TCTAAATTAAAGGACTTTTCACTTTAGCATCTCTCTGGATCATATGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTAAAGGACTTTTCACTTTAGCATCTCTCTGGATCATATGAAAT  773

seq1  GTGTACATGTTTACAAGTCAATATCTGGGAAAACATGACTCTATTTAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACATGTTTACAAGTCAATATCTGGGAAAACATGACTCTATTTAACA  823

seq1  GGCACAAAATCAGCCATTCTCATCCATCAGTTTGCTTACATATGAGATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAAAATCAGCCATTCTCATCCATCAGTTTGCTTACATATGAGATTC  873

seq1  CAAGATCAGGGAAAGGAATTTTGTGTCATGTTGATAGTTTAAGCTGTAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCAGGGAAAGGAATTTTGTGTCATGTTGATAGTTTAAGCTGTAGA  923

seq1  ATGTAAGGCAAAGATTCACAAGATAAGGTTCCTCTAGAGTTTGTTAATAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGGCAAAGATTCACAAGATAAGGTTCCTCTAGAGTTTGTTAATAG  973

seq1  TTCTACTCTGTAATATCTGAAAGCCACCCTCTGGTTTTCCAAATGCTTCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTCTGTAATATCTGAAAGCCACCCTCTGGTTTTCCAAATGCTTCC  1023

seq1  TGTGTCCTGTTTTCCAGTAGAATTTCAAGACTTGTAAGTATCAAAGTAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTGTTTTCCAGTAGAATTTCAAGACTTGTAAGTATCAAAGTAAA  1073

seq1  GAAGTCTGTCTTCATGCTTCACTTTTTCAAAGTGAAATCTTAGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTGTCTTCATGCTTCACTTTTTCAAAGTGAAATCTTAGAATTC  1121

seq1: chr12_46771076_46772239
seq2: B6Ng01-070M24.g_65_1216

seq1  GAATTCTCTTTAGCAGCAAACAGAGTAACAAAACAGTCGAGGGGGAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTAGCAGCAAACAGAGTAACAAAACAGTCGAGGGGGAGTGA  50

seq1  TCGTGATTAAAAAGAAATAGAGTCAGGGAAACGGCACTACATTATATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATTAAAAAGAAATAGAGTCAGGGAAACGGCACTACATTATATTTT  100

seq1  CCTCTAAATCTAAGGCACTATACCTGAATAGGAGCAGAGAGCAGAGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTAAATCTAAGGCACTATACCTGAATAGGAGCAGAGAGCAGAGAAGC  150

seq1  AGGTATGTAGAAAGCACTCGTCCATCCTAATATCCAAACACACTGGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGTAGAAAGCACTCGTCCATCCTAATATCCAAACACACTGGATGT  200

seq1  AAGAAAGCACCAGCTACATGCCATAAGATCTAATTACCCAGAATTGCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGCACCAGCTACATGCCATAAGATCTAATTACCCAGAATTGCCTT  250

seq1  TCCTGCCCCACAGCAATCATTTTGATGACAGGCTTCTCTGCACTGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCACAGCAATCATTTTGATGACAGGCTTCTCTGCACTGTAAAA  300

seq1  CAAAATGGGGAACCTGTGCTGTATAAACTGCCTCCTGCTTTTCTCCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGGGGAACCTGTGCTGTATAAACTGCCTCCTGCTTTTCTCCTTCC  350

seq1  TCTGCTATCAGACTCTCTATCTCATTTATTTTCCACACATTAATGGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTATCAGACTCTCTATCTCATTTATTTTCCACACATTAATGGTAGC  400

seq1  AGTCACCTTGAGCTGGTGATGCAGAGTAATTTTCACAGAAACCTTGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTTGAGCTGGTGATGCAGAGTAATTTTCACAGAAACCTTGATCA  450

seq1  GAAACCATAAATCAGCCTGATGTGCTTTTATGGTCTAATAACATTCCGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATAAATCAGCCTGATGTGCTTTTATGGTCTAATAACATTCCGTT  500

seq1  TGCTCCTACAGGTCTGTATGTAAAACTGCATTGCAGTGAGTCCTCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTACAGGTCTGTATGTAAAACTGCATTGCAGTGAGTCCTCTGGAT  550

seq1  ATATTTTTCCCCCTTTTCGCACAGCTCACTCTTGCTCTCATGCACTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTCCCCCTTTTCGCACAGCTCACTCTTGCTCTCATGCACTTACC  600

seq1  CTCCCTCCCTCCTTTATCCTTCTCCCTCTCGCCTCTGTAGCGCGATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTCCTTTATCCTTCTCCCTCTCGCCTCTGTAGCGCGATGTTT  650

seq1  CCTAGACATACACAGGCACATGCACACCAGCAAGCCACATCAGTATACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACATACACAGGCACATGCACACCAGCAAGCCACATCAGTATACTT  700

seq1  AATGTCTCACAAAACTGCATTTAACTGGTGCTACATGGATGCCAAGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTCACAAAACTGCATTTAACTGGTGCTACATGGATGCCAAGGTAG  750

seq1  CAGGGATGCAAATTCTTTCAGAAGGGCAAAATGATATGTGTGTTAGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGCAAATTCTTTCAGAAGGGCAAAATGATATGTGTGTTAGCTTC  800

seq1  GCAGTGGTTGTTCTTAACAATGAAGTATCTCTGACCAAAAATGTGGCATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGTTGTTCTTAACAATGAAGTATCTCTGACCAAAAATGTGGCATT  850

seq1  G-AAGGAGTCATTGGGTGTTTGTAAATGATTTAGCTCCTTGTGCTTTTGT  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGTCATTGGGTGTTTGTAAATGATTTAGCTCCTTGTGCTTTTGT  900

seq1  GAAAGCGAATGACGCAGCTGCACAGACTGTGCCGTGGCTTGGTTAACGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCGAATGACGCAGCTGCACAGACTGTGCCGTGGCTTGGTTAACGAC  950

seq1  ACAATGAGGTTTTCCTCTGTGTGCCCATCTTCTGCAGTGTACTGGTTGAC  999
      || |||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AC-ATGAGGTTTTCCTCTGTGTGCCCATCTTCTGCAGTGTACTGGTTGAA  999

seq1  AGAGCCTAGCAC-TCTCGCCCCACTCCCTCAGACATGGTGTGATGTGGAG  1048
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  AGAGCCTAGCACTTCTCGCCCCACTCCCTCAGA-ATGGTGTGATGTGGAG  1048

seq1  TGGAGTGGAGGCTACCACAATGGCAGGAAGGAGACCTGTG-ATCTCAGAA  1097
      ||||||||||||||||||||||||||  |||| ||||||| |||||| | 
seq2  TGGAGTGGAGGCTACCACAATGGCAG--AGGAAACCTGTGTATCTCAAAG  1096

seq1  GCAAAGGAGACTGTGAGTCCAAAGTAGGTGCAGTATGAGGAGAAAGGTAA  1147
       ||||||  ||| ||||||   |||| |||| | ||||||||||||    
seq2  CCAAAGGGAACT-TGAGTC---AGTA-GTGC-GAATGAGGAGAAAG---T  1137

seq1  AGAGACTAGCTGGGTTA  1164
      ||| |||| ||||||||
seq2  AGA-ACTA-CTGGGTTA  1152