BAC Information

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BAC

Clone NameB6Ng01-071A02
Chromosome12 (Build37)
Map Location 91,787,885 - 91,946,879
singlet/doubletdoublet
Overlap geneLOC100039287
Upstream geneNrxn3, LOC100039498
Downstream geneDio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, Ston2, EG666955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071A02.bB6Ng01-071A02.g
ACCDH888828DH888829
length1,0161,106
definitionDH888828|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A02, 5' end.DH888829|Mus musculus domesticus DNA, BAC clone: B6Ng01-071A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,787,885 - 91,788,686)(91,945,751 - 91,946,879)
sequence
gaattcagcttcattcagacacaaaggatgaagttctatcattttcagga
aaatggatgaaatgggatatcatcatactaaacaaaataagccagaaaga
caaatatttcatgctttctgtcatatgcaaaatacatattataggtaata
tatgtatattatatattacatgaaagtagaggagaaagtattattgtggg
tgggagcatatagaataaaggaagggaaagaacagggaagtcaaggaaaa
tctgcaacctgtatgtgtgcccttagactgaaacctactgtttcatatct
cattgtggtgtttgaataagaatgatcctcatatatgtgaatgattggtc
atcagggaatggcagtacttaggatggataaagaactatgaccgtttcgg
aggaagtatgtccctgaatgtgaggtttgagattttggaaacccatacca
ggcctagaggctcactctcttcctgctaccagtggatttggatgtagaat
gctcaactacttcctcagcaccatgtctgactgcctgtcaaccatgtttc
ctgccatgatgagaatgactaaacctctgaaactaaaagcaagtcccaca
gacaggagtctagcatagctgttctctgagaggctctacccagctgctga
ctcagacagatgcagacacccatagtctagtagtggattgagcttgggga
cacttatggaaaaacagaagggaagattgcaggccctaaggggataggaa
cttcacaggaggaccaacagagtcaactaacctggacttctggggctctc
agagactggaagcatcaaccaaagaatatacatgggccggacttaggtct
cctctcacatgtgtagtagaacaatagcttgggtcccaaacactggagtg
ggggctatcccaaaagctgttgcctgtgcatgcaatatgtctacttgggc
tgccttgcctggctttagtgggagagatgcacctagcctcacagagactt
ctgtgccaggtggggg
gaattcattgtaatggtctagacaggaaacacatcttggcagcagacata
ggaaagagaagagatgtgatagagaaaaacagtagaggggacttggggac
agtagaggggacagcctttggtatcaatgaatagaacaatagaagctaaa
tagacatggaaccaaattatttccatagaacagtactttaaccagtactg
ggcaggtgaataatattttaaatatgttacatttttgctactatagtgat
atcatatctttgaaggtttcatggaacactggctacagatctgaatttta
cattttaactggaaccacctagaaatccctccaatggacttgtgatgatg
tcattgattgattccacacttcctttagagcataaggtagaaaaacacat
agtcccacatagcaatggcctacagaatggctctttccttgtcaagagac
tgaaaacatagctattgacactgtctagatcactgagttcctgggtgggt
taggacatttccagtcaggaccagtcttagattatagacacagaagtgcc
atccctggcctcatcaattcgggagcttggcatttcccacagcagagtct
tagggtagagtggttcccttatcccagatctatccccatttttatgatga
tctggagtctaaagccagtgtttagttaggacttgatgagccttcttcac
tggcctatgttcccaagaaaaagctatgctgctcccatgtttctcttgac
ccacatggaggctgaacagtgactgttttagggtaggaatagagactgag
gtcattcttgtggcctattgtattagcttaaggttttttaaaaaaatttt
ttattagatgttttctttatttacattcaaatgttatcccctttcctggt
ttaatctccccaaccccctatctccttcccctctcctgctcaccaaccca
cccactcccacttcctggccctggcattccctacactggggcatagagct
tcacagaccagggctttcctccatgatatgtagttggagcagtacagaaa
agatggcacccaagaattgagacttctggtgaccctgtcatgagtcacaa
agtcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_91787885_91788686
seq2: B6Ng01-071A02.b_45_846

seq1  GAATTCAGCTTCATTCAGACACAAAGGATGAAGTTCTATCATTTTCAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCTTCATTCAGACACAAAGGATGAAGTTCTATCATTTTCAGGA  50

seq1  AAATGGATGAAATGGGATATCATCATACTAAACAAAATAAGCCAGAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATGAAATGGGATATCATCATACTAAACAAAATAAGCCAGAAAGA  100

seq1  CAAATATTTCATGCTTTCTGTCATATGCAAAATACATATTATAGGTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTCATGCTTTCTGTCATATGCAAAATACATATTATAGGTAATA  150

seq1  TATGTATATTATATATTACATGAAAGTAGAGGAGAAAGTATTATTGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATTATATATTACATGAAAGTAGAGGAGAAAGTATTATTGTGGG  200

seq1  TGGGAGCATATAGAATAAAGGAAGGGAAAGAACAGGGAAGTCAAGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCATATAGAATAAAGGAAGGGAAAGAACAGGGAAGTCAAGGAAAA  250

seq1  TCTGCAACCTGTATGTGTGCCCTTAGACTGAAACCTACTGTTTCATATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAACCTGTATGTGTGCCCTTAGACTGAAACCTACTGTTTCATATCT  300

seq1  CATTGTGGTGTTTGAATAAGAATGATCCTCATATATGTGAATGATTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGTGTTTGAATAAGAATGATCCTCATATATGTGAATGATTGGTC  350

seq1  ATCAGGGAATGGCAGTACTTAGGATGGATAAAGAACTATGACCGTTTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGAATGGCAGTACTTAGGATGGATAAAGAACTATGACCGTTTCGG  400

seq1  AGGAAGTATGTCCCTGAATGTGAGGTTTGAGATTTTGGAAACCCATACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTATGTCCCTGAATGTGAGGTTTGAGATTTTGGAAACCCATACCA  450

seq1  GGCCTAGAGGCTCACTCTCTTCCTGCTACCAGTGGATTTGGATGTAGAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGAGGCTCACTCTCTTCCTGCTACCAGTGGATTTGGATGTAGAAT  500

seq1  GCTCAACTACTTCCTCAGCACCATGTCTGACTGCCTGTCAACCATGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACTACTTCCTCAGCACCATGTCTGACTGCCTGTCAACCATGTTTC  550

seq1  CTGCCATGATGAGAATGACTAAACCTCTGAAACTAAAAGCAAGTCCCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCATGATGAGAATGACTAAACCTCTGAAACTAAAAGCAAGTCCCACA  600

seq1  GACAGGAGTCTAGCATAGCTGTTCTCTGAGAGGCTCTACCCAGCTGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGAGTCTAGCATAGCTGTTCTCTGAGAGGCTCTACCCAGCTGCTGA  650

seq1  CTCAGACAGATGCAGACACCCATAGTCTAGTAGTGGATTGAGCTTGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGACAGATGCAGACACCCATAGTCTAGTAGTGGATTGAGCTTGGGGA  700

seq1  CACTTATGGAAAAACAGAAGGGAAGATTGCAGGCCCTAAGGGGATAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATGGAAAAACAGAAGGGAAGATTGCAGGCCCTAAGGGGATAGGAA  750

seq1  CTTCACAGGAGGACCAACAGAGTCAACTAACCTGGACTTCTGGGGCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGGAGGACCAACAGAGTCAACTAACCTGGACTTCTGGGGCTCTC  800

seq1  AG  802
      ||
seq2  AG  802

seq1: chr12_91945751_91946879
seq2: B6Ng01-071A02.g_68_1173 (reverse)

seq1  TGGACTTTGTGTGACTCATGACAGGTGTTCACCCAGAGGTCTC-ATTCTA  49
      |||||||  |||||||||||||||  | ||| ||||| ||||| ||||| 
seq2  TGGACTT--TGTGACTCATGACAG--GGTCA-CCAGAAGTCTCAATTCT-  44

seq1  TGGGCTCGCCATCTTTTTCTGTACTTGCCTCCAACTACCATAATCAATGG  99
      ||||   |||||| |||||||||||   ||||||||| ||| ||||   |
seq2  TGGG--TGCCATC-TTTTCTGTACT--GCTCCAACTA-CAT-ATCA--TG  85

seq1  GAGGAAAGGCCCTTGGTCCTGTGAAGGCTCTATGCCCCAGTGTAGGGGAA  149
      ||||||||  || |||| ||||||| |||||||||||||||||| |||||
seq2  GAGGAAAG--CCCTGGT-CTGTGAA-GCTCTATGCCCCAGTGTA-GGGAA  130

seq1  TGCCAGGGCCAGGAAGTGGGAGTGGGTGGGTTGGTGAGCAGGGAGAGGGG  199
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  TGCCAGGGCCAGGAAGTGGGAGTGGGTGGGTTGGTGAGCA-GGAGA-GGG  178

seq1  GAAGGAGATAGGGGGTTTGGGGAGATTAAACCAGGAAAGGGGATAACATT  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAAGGAGATAGGGGG-TTGGGGAGATTAAACCAGGAAAGGGGATAACATT  227

seq1  TGAAATGTAAATAAAGAAAACATCTAATAAAAAATTTTTTTAAAAAACCT  299
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-AATGTAAATAAAGAAAACATCTAATAAAAAATTTTTTTAAAAAACCT  276

seq1  TAAGCTAATACAATAGGCCACAAGAATGACCTCAGTCTCTATTCCTACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTAATACAATAGGCCACAAGAATGACCTCAGTCTCTATTCCTACCC  326

seq1  TAAAACAGTCACTGTTCAGCCTCCATGTGGGTCAAGAGAAACATGGGAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGTCACTGTTCAGCCTCCATGTGGGTCAAGAGAAACATGGGAGC  376

seq1  AGCATAGCTTTTTCTTGGGAACATAGGCCAGTGAAGAAGGCTCATCAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGCTTTTTCTTGGGAACATAGGCCAGTGAAGAAGGCTCATCAAGT  426

seq1  CCTAACTAAACACTGGCTTTAGACTCCAGATCATCATAAAAATGGGGATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTAAACACTGGCTTTAGACTCCAGATCATCATAAAAATGGGGATA  476

seq1  GATCTGGGATAAGGGAACCACTCTACCCTAAGACTCTGCTGTGGGAAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGGGATAAGGGAACCACTCTACCCTAAGACTCTGCTGTGGGAAATG  526

seq1  CCAAGCTCCCGAATTGATGAGGCCAGGGATGGCACTTCTGTGTCTATAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTCCCGAATTGATGAGGCCAGGGATGGCACTTCTGTGTCTATAAT  576

seq1  CTAAGACTGGTCCTGACTGGAAATGTCCTAACCCACCCAGGAACTCAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGACTGGTCCTGACTGGAAATGTCCTAACCCACCCAGGAACTCAGTG  626

seq1  ATCTAGACAGTGTCAATAGCTATGTTTTCAGTCTCTTGACAAGGAAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGACAGTGTCAATAGCTATGTTTTCAGTCTCTTGACAAGGAAAGAG  676

seq1  CCATTCTGTAGGCCATTGCTATGTGGGACTATGTGTTTTTCTACCTTATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTGTAGGCCATTGCTATGTGGGACTATGTGTTTTTCTACCTTATG  726

seq1  CTCTAAAGGAAGTGTGGAATCAATCAATGACATCATCACAAGTCCATTGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAAAGGAAGTGTGGAATCAATCAATGACATCATCACAAGTCCATTGG  776

seq1  AGGGATTTCTAGGTGGTTCCAGTTAAAATGTAAAATTCAGATCTGTAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTTCTAGGTGGTTCCAGTTAAAATGTAAAATTCAGATCTGTAGCC  826

seq1  AGTGTTCCATGAAACCTTCAAAGATATGATATCACTATAGTAGCAAAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCCATGAAACCTTCAAAGATATGATATCACTATAGTAGCAAAAAT  876

seq1  GTAACATATTTAAAATATTATTCACCTGCCCAGTACTGGTTAAAGTACTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATATTTAAAATATTATTCACCTGCCCAGTACTGGTTAAAGTACTG  926

seq1  TTCTATGGAAATAATTTGGTTCCATGTCTATTTAGCTTCTATTGTTCTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGGAAATAATTTGGTTCCATGTCTATTTAGCTTCTATTGTTCTAT  976

seq1  TCATTGATACCAAAGGCTGTCCCCTCTACTGTCCCCAAGTCCCCTCTACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGATACCAAAGGCTGTCCCCTCTACTGTCCCCAAGTCCCCTCTACT  1026

seq1  GTTTTTCTCTATCACATCTCTTCTCTTTCCTATGTCTGCTGCCAAGATGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTCTATCACATCTCTTCTCTTTCCTATGTCTGCTGCCAAGATGT  1076

seq1  GTTTCCTGTCTAGACCATTACAATGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  GTTTCCTGTCTAGACCATTACAATGAATTC  1106