BAC Information

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BAC

Clone NameB6Ng01-071J02
Chromosome12 (Build37)
Map Location 75,997,804 - 76,116,633
singlet/doubletdoublet
Overlap geneKcnh5
Upstream geneHif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071J02.bB6Ng01-071J02.g
ACCDH889230DH889231
length1,154843
definitionDH889230|Mus musculus domesticus DNA, BAC clone: B6Ng01-071J02, 5' end.DH889231|Mus musculus domesticus DNA, BAC clone: B6Ng01-071J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,115,467 - 76,116,633)(75,997,804 - 75,998,648)
sequence
gaattcttgtttctaattaaaatctttttttctacttctttctaactcac
tcttccttctatctctgatataacattagtaaagggtaagtgcaggttta
cgactttcttcttaactttagaggcatcttagtgatatagagaccaatgc
cggttactaggacaattttggtgaagttggttgttataataaagacaaga
tcagctctaggctagtgaaatctctccaaccttatgctaaaatttgatat
ggaatagaatgacctctcttctatcccagtttctcttacaagtggacctt
gcattcaaatagtttttcatcagcttatattaccttattgaattcctttc
tcaaaattccagtatctctgaaggttttaaatacttttcgataggcggca
cacaacacaaagtatttaatgagagtcacttctaagacacaagaggtaca
gtgcagattctggctagcatggagcatagactaaatgaagactagagaaa
gacaatgtctggctcacatgtgaaggtctggagaggtcctatgttaatgg
ttcattgaaaagatgatccaaggaaaacagggacctttagaggtgaggtg
ggaggagagccattctggcaccagagacttctgaagaagaaccttcgtgt
tgtatcaaagtgcagccactacagttgctctaatggaccacacaaaaccc
acacacatcactgatgagtctcattctttaacctctgaaatatcatcaat
aaaggtgggcttcggggaatttaataggaagcaaataatggttaaaccat
gatccccagaattggctttccatgtcagtattttaggtaactccgtctaa
ggtcagaggtcacatctaagactcataaatggaaggtaattagaaaaaaa
tcacggtttgatgtttgttgcgaatagcacaaaggtgtccataaagaaaa
gattgttattaagaatttagtgagtgctgcttgacctaaggaacaaacaa
atggatgaatgcagaatgtatttgtcccgaaccttccctgacatcatgac
tttatctgctgcattagcaactcactaagtggagctctgcagttaattgc
tcgaatatagaatttttgtctctacatatcagtctgaaataaactactga
tcat
gaattctttacataagagctaatgatgactatctaatacaatgctaaaga
ggagaggtctcattgagtggagatgcagttcatgcacaaaacccatagca
ataagttctcaatatccaacagtggcatcagatgtaggcaacgaaatagt
catctcaatggagcacacattgcctgtagggaagaggaacctaacactaa
gttacagaaaagtccctatggcatgagactgtaaagtggtctgacagctt
cagaagccgaaccctcccttgacattaatctataattttaactaaacaga
agtgaagaaatgacagctcaatatactcagcctgagatcaagtttgtcat
ggcaacattggcaggttggaccctgattcttcaaagattacattgcctta
gttaacaaaattcatactttttttttattacagaatagagattataaata
aatgtaaagtgtgcatgcagtcaactgcataatgtacaagcaatatctat
gttttgaataattgtctttggcaggccagaatccagctggacatgcagta
tgtacatatcaaaatccatattgtgttcatcatattgaaagcaagtgaaa
atatatatgtatatactatatatacacacttatgtatatagatgtatata
ctgttttaaatatattaacaaatatatatgtatatatatattaaaagttg
atttcgtctttgtcagattcgggtgactcaggccttgagacactaaaaat
atcctgacatggtatttggggaggtacttggagtggaatttggggttttg
gagaagatgtctgggtacgcttttctccgaaagtattttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_76115467_76116633
seq2: B6Ng01-071J02.b_44_1197 (reverse)

seq1  ATGATCAGTAGTTTATTTTTCAGAACTGAATAATTTGTAGAGGAAAGAAA  50
      |||||||||||||||  |||||| ||||    || |||||||  |  |||
seq2  ATGATCAGTAGTTTA--TTTCAG-ACTG----ATATGTAGAG--ACAAAA  41

seq1  AATCTATATTCGAGCAATTAACTGCAGAGGCCTCCAC-TAGTGAGTTGCT  99
      | |||||||||||||||||||||||||||  |||||| ||||||||||||
seq2  ATTCTATATTCGAGCAATTAACTGCAGAG--CTCCACTTAGTGAGTTGCT  89

seq1  AATGGCAGCAGATAAAGTCATGATGTCAGGGAAGGTTCGGAACAAAATAC  149
      ||| |||||||||||||||||||||||||||||||||||| || ||||||
seq2  AAT-GCAGCAGATAAAGTCATGATGTCAGGGAAGGTTCGGGAC-AAATAC  137

seq1  ATTCTGCATTCATTCCATTTTGTTTGTT-CTTAGGTCAAGCAGCACTCAC  198
      |||||||||||| |||| |||||||||| |||||||||||||||||||||
seq2  ATTCTGCATTCA-TCCA-TTTGTTTGTTCCTTAGGTCAAGCAGCACTCAC  185

seq1  TAAATTCTTAATAACAATCTTTTCTTTATGGACACCTTTGTGCTTATTCG  248
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAAATTCTTAATAACAATCTTTTCTTTATGGACACCTTTGTGC-TATTCG  234

seq1  CAACAAACATC-AACCCTGATTTTTTTCTAATTACCTTCCATTTATGAGT  297
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  CAACAAACATCAAACCGTGATTTTTTTCTAATTACCTTCCATTTATGAGT  284

seq1  CTTAGATGTGACCTCTGACCTTAGACGGAGTTACCTAAAATACTGACATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATGTGACCTCTGACCTTAGACGGAGTTACCTAAAATACTGACATG  334

seq1  GAAAGCCAATTCTGGGGATCATGGTTTAACCATTATTTGCTTCCTATTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCAATTCTGGGGATCATGGTTTAACCATTATTTGCTTCCTATTAA  384

seq1  ATTCCCCGAAGCCCACCTTTATTGATGATATTTCAGAGGTTAAAGAATGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCCGAAGCCCACCTTTATTGATGATATTTCAGAGGTTAAAGAATGA  434

seq1  GACTCATCAGTGATGTGTGTGGGTTTTGTGTGGTCCATTAGAGCAACTGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCAGTGATGTGTGTGGGTTTTGTGTGGTCCATTAGAGCAACTGT  484

seq1  AGTGGCTGCACTTTGATACAACACGAAGGTTCTTCTTCAGAAGTCTCTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGCACTTTGATACAACACGAAGGTTCTTCTTCAGAAGTCTCTGG  534

seq1  TGCCAGAATGGCTCTCCTCCCACCTCACCTCTAAAGGTCCCTGTTTTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAATGGCTCTCCTCCCACCTCACCTCTAAAGGTCCCTGTTTTCCT  584

seq1  TGGATCATCTTTTCAATGAACCATTAACATAGGACCTCTCCAGACCTTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCATCTTTTCAATGAACCATTAACATAGGACCTCTCCAGACCTTCA  634

seq1  CATGTGAGCCAGACATTGTCTTTCTCTAGTCTTCATTTAGTCTATGCTCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAGCCAGACATTGTCTTTCTCTAGTCTTCATTTAGTCTATGCTCC  684

seq1  ATGCTAGCCAGAATCTGCACTGTACCTCTTGTGTCTTAGAAGTGACTCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGCCAGAATCTGCACTGTACCTCTTGTGTCTTAGAAGTGACTCTC  734

seq1  ATTAAATACTTTGTGTTGTGTGCCGCCTATCGAAAAGTATTTAAAACCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATACTTTGTGTTGTGTGCCGCCTATCGAAAAGTATTTAAAACCTT  784

seq1  CAGAGATACTGGAATTTTGAGAAAGGAATTCAATAAGGTAATATAAGCTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATACTGGAATTTTGAGAAAGGAATTCAATAAGGTAATATAAGCTG  834

seq1  ATGAAAAACTATTTGAATGCAAGGTCCACTTGTAAGAGAAACTGGGATAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAACTATTTGAATGCAAGGTCCACTTGTAAGAGAAACTGGGATAG  884

seq1  AAGAGAGGTCATTCTATTCCATATCAAATTTTAGCATAAGGTTGGAGAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGTCATTCTATTCCATATCAAATTTTAGCATAAGGTTGGAGAGA  934

seq1  TTTCACTAGCCTAGAGCTGATCTTGTCTTTATTATAACAACCAACTTCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTAGCCTAGAGCTGATCTTGTCTTTATTATAACAACCAACTTCAC  984

seq1  CAAAATTGTCCTAGTAACCGGCATTGGTCTCTATATCACTAAGATGCCTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGTCCTAGTAACCGGCATTGGTCTCTATATCACTAAGATGCCTC  1034

seq1  TAAAGTTAAGAAGAAAGTCGTAAACCTGCACTTACCCTTTACTAATGTTA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTTAAGAAGAAAGTCGTAAACCTGCACTTACCCTTTACTAATGTTA  1084

seq1  TATCAGAGATAGAAGGAAGAGTGAGTTAGAAAGAAGTAGAAAAAAAGATT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGAGATAGAAGGAAGAGTGAGTTAGAAAGAAGTAGAAAAAAAGATT  1134

seq1  TTAATTAGAAACAAGAATTC  1167
      ||||||||||||||||||||
seq2  TTAATTAGAAACAAGAATTC  1154

seq1: chr12_75997804_75998648
seq2: B6Ng01-071J02.g_65_907

seq1  GAATTCTTTACATAAGAGCTAATGATGACTATCTAATACAATGCTAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACATAAGAGCTAATGATGACTATCTAATACAATGCTAAAGA  50

seq1  GGAGAGGTCTCATTGAGTGGAGATGCAGTTCATGCACAAAACCCATAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGGTCTCATTGAGTGGAGATGCAGTTCATGCACAAAACCCATAGCA  100

seq1  ATAAGTTCTCAATATCCAACAGTGGCATCAGATGTAGGCAACGAAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTCTCAATATCCAACAGTGGCATCAGATGTAGGCAACGAAATAGT  150

seq1  CATCTCAATGGAGCACACATTGCCTGTAGGGAAGAGGAACCTAACACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCAATGGAGCACACATTGCCTGTAGGGAAGAGGAACCTAACACTAA  200

seq1  GTTACAGAAAAGTCCCTATGGCATGAGACTGTAAAGTGGTCTGACAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGAAAAGTCCCTATGGCATGAGACTGTAAAGTGGTCTGACAGCTT  250

seq1  CAGAAGCCGAACCCTCCCTTGACATTAATCTATAATTTTAACTAAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCGAACCCTCCCTTGACATTAATCTATAATTTTAACTAAACAGA  300

seq1  AGTGAAGAAATGACAGCTCAATATACTCAGCCTGAGATCAAGTTTGTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAAATGACAGCTCAATATACTCAGCCTGAGATCAAGTTTGTCAT  350

seq1  GGCAACATTGGCAGGTTGGACCCTGATTCTTCAAAGATTACATTGCCTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACATTGGCAGGTTGGACCCTGATTCTTCAAAGATTACATTGCCTTA  400

seq1  GTTAACAAAATTCATACTTTTTTTTTATTACAGAATAGAGATTATAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAACAAAATTCATACTTTTTTTTTATTACAGAATAGAGATTATAAATA  450

seq1  AATGTAAAGTGTGCATGCAGTCAACTGCATAATGTACAAGCAATATCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAGTGTGCATGCAGTCAACTGCATAATGTACAAGCAATATCTAT  500

seq1  GTTTTGAATAATTGTCTTTGGCAGGCCAGAATCCAGCTGGACATGCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAATAATTGTCTTTGGCAGGCCAGAATCCAGCTGGACATGCAGTA  550

seq1  TGTACATATCAAAATCCATATTGTGTTCATCATATTGAAAGCAAGTGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATATCAAAATCCATATTGTGTTCATCATATTGAAAGCAAGTGAAA  600

seq1  ATATATATGTATATACTATATATACACACTTATGTATATAGATGTATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATGTATATACTATATATACACACTTATGTATATAGATGTATATA  650

seq1  CTGTTTTAAATATATTAACAAATATATATGTATATATATATTAAAAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTAAATATATTAACAAATATATATGTATATATATATTAAAAGTTG  700

seq1  ATTTCGTCTTTGTCAGATTCGGGTGACTCAGGCCTTGAGACACTAAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCGTCTTTGTCAGATTCGGGTGACTCAGGCCTTGAGACACTAAAAAT  750

seq1  ATCCTGACATGGTATTTGGGGAGGTACTTGGAGTGGAATTTGGGGTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACATGGTATTTGGGGAGGTACTTGGAGTGGAATTTGGGGTTTTG  800

seq1  GAGAAGATGTCTGGGGTACGCTTTTCTCTGAGAGTAGTTTTAAAA  845
      |||||||||||| ||||||||||||||| || |||| ||||||||
seq2  GAGAAGATGTCT-GGGTACGCTTTTCTCCGAAAGTA-TTTTAAAA  843