BAC Information

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BAC

Clone NameB6Ng01-071K16
Chromosome12 (Build37)
Map Location 14,650,518 - 14,651,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC238091, EG633789, LOC668481, AW125753, LOC100043256
Downstream geneMap1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071K16.bB6Ng01-071K16.g
ACCDH889301DH889302
length1,2371,201
definitionDH889301|Mus musculus domesticus DNA, BAC clone: B6Ng01-071K16, 5' end.DH889302|Mus musculus domesticus DNA, BAC clone: B6Ng01-071K16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggggatataaattggaaagtatgaagtcaaaatatcactatt
tgcagatgatatggtaatatatataagtcaccctaagaattccagcatag
aatttctcacactgatcaacagcttcagtgaagtagctggatataaaata
aagtcaaacaaatcaatggcctttcattacacaaagaataaacaggctga
gaaagaacttagggaaataatattcttcacaatagtcacaaataatataa
aataccttcgtgtgactctatctaagtaagtgaaagatctgtatgataag
aattcaagcctcttaagaaagaaataaaggaagatctcagaagatggaaa
gatctcccacgctcttggaatgacagtatcaaaatagtaaaaatggcaat
cttgccaaagcaatctacagattcaatgcaatacccatcaaaattccaac
tcaattcttcaactaattagaaagggcagtttgaaaattcatctggaata
acaaaaagcctaggatagcagaaactcttctaaatgataaaataatcttt
ggtggaatcaccatgcctgacctagagttgtactacagaacaattgtgat
aaaaactgcatggtacttatatagcgacagacaggtagaccaatagaata
aaactgaagacctagaaatgaacccacacacctatggtcacttgatcttt
gacaagggagctaaaaccatccagtggaaaaaagacagcattttcaacaa
atggtgctggcacagctggtggttatcatgtagaagaatgtgaattgatc
cattcttatctccttgtaccaaggtcatgtctaagtggattaaggaactc
tatataaaacaagagacactgaaacctgtagaagagaaagtggggaaaag
ccttgaaaatatgggcacaggggaaaattcctgaatagaacagcaattgt
tgtgctgtaagattgagaactgaaagatgggacctcataaattgcaaatc
ttctataatgcaaaagacaccgtcataagacaaaaaggctacgacgattg
ggaaaggatcttacatcctaaatcagatagactatatgcatataatataa
agaacctcagaaaatagacctcgaaatcaataacctcatttaaaatggcc
agctaacaaagaattccactgagaattggaatggctgagaacctgagaaa
tgttccacacttctttatcactccggaaagttccatc
gaattcttcatgtggaggcctgtttcctactgagaacacctgcctttcca
tggagtgaaattgcagggcttccaaaagaaatatgttctacactagattg
aatttctccatcactgggtagatatttaactgatgccttcactgagatgg
taagtggaataccaaatgctattcactgagctagaagattattcccttgg
gaaatgccaaatgccagggctatagtccagggaaatgtaatgagaagttc
acacacacaaacatacacacatacacacacacacacgaggagacagacag
atagaacccattcccaggtagataaccagatgaatgatactatgttattg
cacagacatataaagtggcaatgtaaaataattaaagccatggtattcac
agaataaggtcttgaaatgacagtggtgctcaaaggagttgtagcatttg
aactaaaatggagtgaataaacagatacattacggaaatatccctccggg
cagtggtggtgcatgcctgtaatcccagcacttgaaaggcagaggcagat
agatttctgagttcgacactagcctggtctacagagtgagttccaagaca
gccagggctacacagagaaaccctgtctcgaaaaaaaaaaaaaaaaattc
ctgttttcttttgtttttaaactatgttcaagagtgttttgcctgctggt
atatcagtgcataatttgtgttctcaatcccaatgaatgccataagaagg
tggtggatgctccagaaatggagtggcaataattgtaagctgacatatct
gggcctgaaatcaaactgtccttgtaatcactgagcatctccccagccct
agagaaggttttcaagagggacaagaatattcgcaaaggaaggcagaagt
ctaatgttaacttttatgtagcatgtgaacaggtaataagatagaagttt
ttttgtgactagaattttgtttaaaaaaaaacatatgatctgggctgaaa
gtacttagatgatgtacttggatactgtctggcacatgaggatgtgatct
agctcaaatcacgtaacaagacagccagtagcaatgatttatattctcag
caggagaggtgaaattgggttcaatcccagcctgcagtgacaactctggc
tactggttggctgcatcatgacagagacttgacctttttgcagcttttat
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_14650518_14651761
seq2: B6Ng01-071K16.g_69_1269 (reverse)

seq1  AATAAAAAGTGGAAAAAAAGTCAAGGTCTCTGTCATTGATGTGCAGCCCA  50
      ||| |||||  | ||||| ||||| |||||||||| |||  ||||||| |
seq2  AAT-AAAAGCTGCAAAAAGGTCAA-GTCTCTGTCA-TGA--TGCAGCCAA  45

seq1  CCAAGTAAGCCAGGAAGGTTGTGTGCCATGCCAAGCCTGAGATTTGTACC  100
      || ||| ||||||    |||||   |  |||  || ||| || ||| |||
seq2  CC-AGT-AGCCAG---AGTTGT---CACTGC--AGGCTGGGA-TTGAACC  84

seq1  TATTTCTACTTCTTCCCTGCTGAGATTAT-AATCATATGCTACTGCCTTG  149
       | ||  || |||  |||||||||| ||| |||||| |||||||| | ||
seq2  CAATTTCACCTCT--CCTGCTGAGAATATAAATCAT-TGCTACTGGC-TG  130

seq1  TCTTGTTTACGTGGATTTGGAAGCTTAGATTCACATCTTCATGGTTGCCA  199
      ||||| |||||| ||||||  ||| |||| ||||||| |||||  |||||
seq2  TCTTG-TTACGT-GATTTG--AGC-TAGA-TCACATCCTCATG--TGCCA  172

seq1  GACAAGTATCCAAGGTACATCATCTAAGGTAACTTTTCAGCCCAGATCAT  249
      ||| ||||||||| ||||||||||||| |||   ||||||||||||||| 
seq2  GAC-AGTATCCAA-GTACATCATCTAA-GTA--CTTTCAGCCCAGATCA-  216

seq1  TATTGTTTTTTTTTTTTTTTTAAACAAAATTCTAGTCACAAAAAAACTTC  299
              | | ||||||||||||||||||||||||||||||||||||||
seq2  --------TATGTTTTTTTTTAAACAAAATTCTAGTCACAAAAAAACTTC  258

seq1  TATCTTATTTACCTGTTCACATGCTACATAAAAGTTAACATTAGACTTCT  349
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTA-TTACCTGTTCACATGCTACATAAAAGTTAACATTAGACTTCT  307

seq1  GCCTTTCCTTTGCGAATATTCTTGTCCCTCTTGAAAACCTTCTCTAGGGC  399
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCC-TTCCTTTGCGAATATTCTTGTCCCTCTTGAAAACCTTCTCTAGGGC  356

seq1  TGGGGAGATGCTCAGTGATTACAAGGACAGTTTGATTTCAGGCCCAGATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGATGCTCAGTGATTACAAGGACAGTTTGATTTCAGGCCCAGATA  406

seq1  TGTCAGCTTACAATTATTGCCACTCCATTTCTGGAGCATCCACCACCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCTTACAATTATTGCCACTCCATTTCTGGAGCATCCACCACCTTC  456

seq1  TTATGGCATTCATTGGGATTGAGAACACAAATTATGCACTGATATACCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGCATTCATTGGGATTGAGAACACAAATTATGCACTGATATACCAG  506

seq1  CAGGCAAAACACTCTTGAACATAGTTTAAAAACAAAAGAAAACAGGAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAACACTCTTGAACATAGTTTAAAAACAAAAGAAAACAGGAATT  556

seq1  TTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCT  606

seq1  TGGAACTCACTCTGTAGACCAGGCTAGTGTCGAACTCAGAAATCTATCTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTCTGTAGACCAGGCTAGTGTCGAACTCAGAAATCTATCTG  656

seq1  CCTCTGCCTTTCAAGTGCTGGGATTACAGGCATGCACCACCACTGCCCGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCTTTCAAGTGCTGGGATTACAGGCATGCACCACCACTGCCCGG  706

seq1  AGGGATATTTCCGTAATGTATCTGTTTATTCACTCCATTTTAGTTCAAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATTTCCGTAATGTATCTGTTTATTCACTCCATTTTAGTTCAAAT  756

seq1  GCTACAACTCCTTTGAGCACCACTGTCATTTCAAGACCTTATTCTGTGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAACTCCTTTGAGCACCACTGTCATTTCAAGACCTTATTCTGTGAA  806

seq1  TACCATGGCTTTAATTATTTTACATTGCCACTTTATATGTCTGTGCAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGGCTTTAATTATTTTACATTGCCACTTTATATGTCTGTGCAATA  856

seq1  ACATAGTATCATTCATCTGGTTATCTACCTGGGAATGGGTTCTATCTGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTATCATTCATCTGGTTATCTACCTGGGAATGGGTTCTATCTGTC  906

seq1  TGTCTCCTCGTGTGTGTGTGTGTATGTGTGTATGTTTGTGTGTGTGAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCTCGTGTGTGTGTGTGTATGTGTGTATGTTTGTGTGTGTGAACT  956

seq1  TCTCATTACATTTCCCTGGACTATAGCCCTGGCATTTGGCATTTCCCAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTACATTTCCCTGGACTATAGCCCTGGCATTTGGCATTTCCCAAG  1006

seq1  GGAATAATCTTCTAGCTCAGTGAATAGCATTTGGTATTCCACTTACCATC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAATCTTCTAGCTCAGTGAATAGCATTTGGTATTCCACTTACCATC  1056

seq1  TCAGTGAAGGCATCAGTTAAATATCTACCCAGTGATGGAGAAATTCAATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAAGGCATCAGTTAAATATCTACCCAGTGATGGAGAAATTCAATC  1106

seq1  TAGTGTAGAACATATTTCTTTTGGAAGCCCTGCAATTTCACTCCATGGAA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTAGAACATATTTCTTTTGGAAGCCCTGCAATTTCACTCCATGGAA  1156

seq1  AGGCAGGTGTTCTCAGTAGGAAACAGGCCTCCACATGAAGAATTC  1244
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGTTCTCAGTAGGAAACAGGCCTCCACATGAAGAATTC  1201