BAC Information

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BAC

Clone NameB6Ng01-071L23
Chromosome12 (Build37)13 (Build37)
Map Location 95,599,124 - 95,600,31328,577,217 - 28,577,460
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071L23.bB6Ng01-071L23.g
ACCDH889357DH889358
length1,1591,080
definitionDH889357|Mus musculus domesticus DNA, BAC clone: B6Ng01-071L23, 5' end.DH889358|Mus musculus domesticus DNA, BAC clone: B6Ng01-071L23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,599,124 - 95,600,313)(28,577,217 - 28,577,460)
sequence
gaattcacaaatactgtatgaatacaaggagggaagatgacggacatgct
tgtcgcaaagagctgaacggtccaacttttatcatgctactcagagtgat
gcattacttagaactgctaaatattttatttctgggatttttcatttact
tttgctagatttcatttcaatgatggtgattgaacaggtgggaagaaaga
gtgcaccagaaggaaaagctattcaggtagcctagacagtcatctttgaa
gggcctcagcattcggtttattaaacaaaggatgggtttctatggaaaca
caatgaggcaatttagttttcaagttttcactttacactttctctttcac
tggttaacccccagttttaagatgtttagaggatggtcttatttaaatta
gtcattggatattctccattattaggaactgttcacagtttcatgcaagt
attctgtttcacaggctgcatcttttacttaacttctttccagtaattgt
catgataacttttctacaatccacaaggagaaaacaattaactattacca
tgctgcccagataaaacccttctagcttcaataaagaagacttggtacaa
ggtttctatacatgaattagaagttaatagtggtctcagcttgaggttca
ccactttataaacgtttgaatttttttcttctctgaaaatctagaggcat
aggaagcctcagcaaaagacaaagaaaatgaaaatatctctgtgtttgat
tttcaaggcagaagctggtttctgaaaataaccacatttgcttgtaatga
gtgattgtttggatatatcagtcaaaccacgcaattagtatacaattcaa
aataaatcaaggatggcacttgcaatagtcaaatctgattacttctggcc
ctgaaatattggagcttgatgctttcaaaaagctatgttagttctttgta
gttccgtctctttatccgtaaatgcagtagcatattcaaaagcagatttc
agctctagctccaggcaggaaatgacagtttccatgccctcagtctggat
gtttgacatacacatactttatcaaaatcaggcttgtctccagtcagcct
catgaggggtgctcttctttactgacactcaatctacaagtctgacaaaa
aaacatttt
gaattcaacctgttctggaagaaaatgcaaatcaaaactataggcattga
cacagacatcatatgaacaaaatcataatctgtgctcagttccattatta
aaatattataaatttcatattttaattaggaggcattagctacctatgat
agatatcagatgcatgctttccaatttttgtgatgtgtgtattggaattc
agtagtagttcaagcctgatgctagactaaattgaaagatgtttttgaga
cctctaagcaattgcaaatggaggctgaggttcaaattcaaacttcttaa
atatatgctcagtcagttcaggagagagcttcaagtttaatgcttttctg
gaaagcagtctggcggtttctcagaaaattggacatggttataccggagg
atccctcaatacctctcctgggcatatatccagaagatgttataactagt
aaggaagaaacatgctccactatgttcatagcagccttatttataatagc
cagaagctggaaagaacccagatgcccctcaacagaggaatggatacaaa
aaaatgtggtacatttgcacaatggagtactactcagctatttaaaagaa
tgaatttatgaaattcctaggcaaatggttggtcctggagggcattatcc
tgagtgaggtaacccaatcataaaagaactcaaatgatatgtactcactg
ataagtggatattagcccagaaacttagaatacccaagatataagttaca
atttgcaaaacacatgaaactcaagaagaacgaagaccaaagtgtgcaca
ctttgtcccttcttaaaattgggaacaaaacacccatgggaggagttaca
gagacaaagtctggagctgagacaaaaggatggaccatctagagactgcc
atatccagggatccatcccataatcagcctccaaacgctgacaccattgc
atacactagcagattgtgctgataggaccctgatatagctgtctcgagtg
agactacaccgggcctagcaaacacaaagtagatgctcacagtcagctat
tggatggatcacagaccccatggaggagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_95599124_95600313
seq2: B6Ng01-071L23.b_42_1200

seq1  GAATTCACAAATACTGTATGAATACAAGGAGGGAAGATGACGGACATGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAATACTGTATGAATACAAGGAGGGAAGATGACGGACATGCT  50

seq1  TGTCGCAAAGAGCTGAACGGTCCAACTTTTATCATGCTACTCAGAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCAAAGAGCTGAACGGTCCAACTTTTATCATGCTACTCAGAGTGAT  100

seq1  GCATTACTTAGAACTGCTAAATATTTTATTTCTGGGATTTTTCATTTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTACTTAGAACTGCTAAATATTTTATTTCTGGGATTTTTCATTTACT  150

seq1  TTTGCTAGATTTCATTTCAATGATGGTGATTGAACAGGTGGGAAGAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAGATTTCATTTCAATGATGGTGATTGAACAGGTGGGAAGAAAGA  200

seq1  GTGCACCAGAAGGAAAAGCTATTCAGGTAGCCTAGACAGTCATCTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCAGAAGGAAAAGCTATTCAGGTAGCCTAGACAGTCATCTTTGAA  250

seq1  GGGCCTCAGCATTCGGTTTATTAAACAAAGGATGGGTTTCTATGGAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTCAGCATTCGGTTTATTAAACAAAGGATGGGTTTCTATGGAAACA  300

seq1  CAATGAGGCAATTTAGTTTTCAAGTTTTCACTTTACACTTTCTCTTTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAGGCAATTTAGTTTTCAAGTTTTCACTTTACACTTTCTCTTTCAC  350

seq1  TGGTTAACCCCCAGTTTTAAGATGTTTAGAGGATGGTCTTATTTAAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAACCCCCAGTTTTAAGATGTTTAGAGGATGGTCTTATTTAAATTA  400

seq1  GTCATTGGATATTCTCCATTATTAGGAACTGTTCACAGTTTCATGCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGGATATTCTCCATTATTAGGAACTGTTCACAGTTTCATGCAAGT  450

seq1  ATTCTGTTTCACAGGCTGCATCTTTTACTTAACTTCTTTCCAGTAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTCACAGGCTGCATCTTTTACTTAACTTCTTTCCAGTAATTGT  500

seq1  CATGATAACTTTTCTACAATCCACAAGGAGAAAACAATTAACTATTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAACTTTTCTACAATCCACAAGGAGAAAACAATTAACTATTACCA  550

seq1  TGCTGCCCAGATAAAACCCTTCTAGCTTCAATAAAGAAGACTTGGTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCCAGATAAAACCCTTCTAGCTTCAATAAAGAAGACTTGGTACAA  600

seq1  GGTTTCTATACATGAATTAGAAGTTAATAGTGGTCTCAGCTTGAGGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTATACATGAATTAGAAGTTAATAGTGGTCTCAGCTTGAGGTTCA  650

seq1  CCACTTTATAAACGTTTGAATTTTTTTCTTCTCTGAAAATCTAGAGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTATAAACGTTTGAATTTTTTTCTTCTCTGAAAATCTAGAGGCAT  700

seq1  AGGAAGCCTCAGCAAAAGACAAAGAAAATGAAAATATCTCTGTGTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCTCAGCAAAAGACAAAGAAAATGAAAATATCTCTGTGTTTGAT  750

seq1  TTTCAAGGCAGAAGCTGGTTTCTGAAAATAACCACATTTGCTTGTAATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGCAGAAGCTGGTTTCTGAAAATAACCACATTTGCTTGTAATGA  800

seq1  GTGATTGTTTGGATATATCAGTCAAACCACGCAATTAGTATACAATTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGTTTGGATATATCAGTCAAACCACGCAATTAGTATACAATTCAA  850

seq1  AATAAATCAAGGATGGCACTTGCAATAGTCAAATCTGATTACTTCTGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATCAAGGATGGCACTTGCAATAGTCAAATCTGATTACTTCTGGCC  900

seq1  CTGAAATATTGGAGCTTGATGCTTTCAAAAAAGCTATGTTAGTTCTTTGT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTGAAATATTGGAGCTTGATGCTTTC-AAAAAGCTATGTTAGTTCTTTGT  949

seq1  AGGTTCCGTCTCTTTATCCGTAAAATGCAAGTAGCATATTCAAAAGGCAG  1000
      | ||||||||||||||||||| |||||| |||||||||||||||| ||||
seq2  A-GTTCCGTCTCTTTATCCGT-AAATGC-AGTAGCATATTCAAAA-GCAG  995

seq1  ATTTTCAGCTCTAAGCTCCCAGGGCAGGGAAATGACAAGTTTTCCATGCC  1050
      | |||||||||| ||||||   |||| ||||||||||   ||||||||||
seq2  A-TTTCAGCTCT-AGCTCC--AGGCA-GGAAATGACA--GTTTCCATGCC  1038

seq1  CTCAGTCTTGAGTGGTTTGACATACACATACTTTATCAAAAATTCCAGCC  1100
      |||||||| ||   |||||||||||||||||||||||||||    ||| |
seq2  CTCAGTCTGGA--TGTTTGACATACACATACTTTATCAAAA---TCAGGC  1083

seq1  TGGTCTCAGGTCCAGCCTCATGAGGGGTGGCTCTTCTTTACTTGACAACT  1150
      | |||||  || |||||||||||||||| |||||||||||| |||| |||
seq2  TTGTCTCCAGT-CAGCCTCATGAGGGGT-GCTCTTCTTTAC-TGAC-ACT  1129

seq1  CACATCTATCTAGTCCCTGACCAAAAAAAAAAATCATTTT  1190
      || ||||| | |||  |||||      |||||| ||||||
seq2  CA-ATCTA-CAAGT--CTGAC------AAAAAAACATTTT  1159

seq1: chr13_28577217_28577460
seq2: B6Ng01-071L23.g_910_1147 (reverse)

seq1  AGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCA  50
      |||||||||||   |||  |||||||||||||||||||||||||||||||
seq2  AGCTCCTCCAT---GGGGTCTGTGATCCATCCAATAGCTGACTGTGAGCA  47

seq1  TCCACTTCTGTGTTTGCCAGGCCCCGGGATAGTCTCACAAGAGACAGCCA  100
      || |||| ||||||||| ||| |||||  |||||||||  |||||||| |
seq2  TCTACTT-TGTGTTTGCTAGG-CCCGGTGTAGTCTCACTCGAGACAGCTA  95

seq1  TATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGT  150
      |||| ||||||| |||||| |||| |||||||||||||||||||||||| 
seq2  TATCAGGGTCCTATCAGCACAATC-TGCTAGTGTATGCAATGGTGTCAGC  144

seq1  GTTTGGAAGCCGATTATGGGATGGATCCCCGGATATGGCAGTCTCTAGAT  200
      ||||||| || |||||||||||||||||| ||||||||||||||||||||
seq2  GTTTGGAGGCTGATTATGGGATGGATCCCTGGATATGGCAGTCTCTAGAT  194

seq1  GGTCCATCCTTTCATCTCAGCTCCAAACTTTGTCTCTGTAACTC  244
      ||||||||||||  ||||||||||| ||||||||||||||||||
seq2  GGTCCATCCTTTTGTCTCAGCTCCAGACTTTGTCTCTGTAACTC  238