BAC Information

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BAC

Clone NameB6Ng01-071P09
Chromosome12 (Build37)
Map Location 77,522,859 - 77,523,334
singlet/doubletsinglet
Overlap geneGm70
Upstream genePpp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2
Downstream geneLOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071P09.bB6Ng01-071P09.g
ACCDH889513DH889514
length1841,107
definitionDH889513|Mus musculus domesticus DNA, BAC clone: B6Ng01-071P09, 5' end.DH889514|Mus musculus domesticus DNA, BAC clone: B6Ng01-071P09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
tcttcctgtgcttttcaataataaagacaaagtgctaaaagttgacttta
tcaaatgaacttctagaagaagaaggaggaagaggaagaaggaggaggag
gaggaaggaggagaaggagaaaggaagaggaggaggacagatgaggatga
tgaagttgctttccttcttttttttttttttttt
gaattccacagcaaggctgacctttgtactcttgcttaactaatttctca
tgcttgcaccttcaggttcacacacatctctacaatggagttctgtctta
ggttttgctgctttgataaaacactgtgaccaacagcaaatacaggagga
aagccttcagtttgtcttacacctcttaagtacacactctttacctgaag
gaagacaagacagaagcctagggacaggaactagagcatggatgaacact
gcttactagaattcagtttgctggtattttattgagactgtttcccttta
tgctcatcagacttattgtctcttaactgtctttgtttttgttccaaact
gcttttgttattgaagtaatgaaggcattgttgaacactttttggttgca
atctctatatacataatttatgaaggtctggttgaactttgctgtaaatc
catctaggactagatttgggtgcatgttttagacgtctcttggaaggtct
tggtcaaaaactcacaagagattcttgtgtcaatattgagattttaggtg
atcttcagctcttggaggaagcactgtcagcccagataatatatatattt
atatttaaaagcctatatacacatatatattaggatatatatatatatgt
atatatatatatatcgcactatatatgtagtaggattttttattttaagt
aaacagttaatattatgattccttgtgggctttttaaaagcatcgttatt
gtaaatttacatacttcccacatttctcttgtatttcaccctccctgcac
catccataaagaatacactttttgtttgggcacggagtcagcagacaccc
ccaaagtccccctagagggactctccccgcaatcttaggaccccctgtga
gtggaacacaacttctgtcccaattcattcttgcgggaactgtgacacat
tagagaagaggaacctggcttgaccagggtcacaagttcctttcctgtag
caccagtatttggtccctgggctaaaagagttggaacccctaagggtcct
aaagacatttctgagacaacccatttttggctccaaatatctggcccttt
tctgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_77522859_77523334
seq2: B6Ng01-071P09.b_130_235 (reverse)

seq1  AAAAAAAAAAAAAAAAAGATTTATTTATTTTATGTATGTGAGTACGCCAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTTCCTTCAGACACATCAGAAGAGGGCATCAGATCCCATTTCAGATGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTGAGCCACCGTGTGGTTGCTGGGATTTGAACCCAGAACCTCTGGAAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGCAGTCGGTGCTCCTAACTGCTAAGCCATCTCTCCAGTCTCTTCTTTTC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTCTTTTCTTTTCTTTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTCCTTC  350
                                                        
seq2  --------------------------------------------------  0

seq1  TCCTTCTCCTCTCCTTCTCCTT--------------------------CT  374
                                                      | 
seq2  ----------------------AAAAAAAAAAAAAAAAAGAAGGAAAGCA  28

seq1  CCTTC-TCCTTCTCCT-TCTCCTTCTCCTCCTTCTCCGTCTCAGTCTCCT  422
       |||| || | ||| | | |||| |||||| | ||              |
seq2  ACTTCATCATCCTCATCTGTCCTCCTCCTCTTCCT--------------T  64

seq1  TCTCCTTCTCCTCCTTCATCTTTTCCTTCTCCTCCTCCTCCTTCTTCCTT  472
      |||||||||||||||||           |||||||||||||||||||| |
seq2  TCTCCTTCTCCTCCTTC-----------CTCCTCCTCCTCCTTCTTCC-T  102

seq1  CTTC  476
      ||||
seq2  CTTC  106