BAC Information

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BAC

Clone NameB6Ng01-072B11
Chromosome12 (Build37)
Map Location 112,779,453 - 112,912,476
singlet/doubletdoublet
Overlap geneEif5, Mark3, Ckb
Upstream genePpp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266
Downstream gene6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072B11.bB6Ng01-072B11.g
ACCDH889604DH889605
length8261,149
definitionDH889604|Mus musculus domesticus DNA, BAC clone: B6Ng01-072B11, 5' end.DH889605|Mus musculus domesticus DNA, BAC clone: B6Ng01-072B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,779,453 - 112,780,277)(112,911,326 - 112,912,476)
sequence
gaattcttagggtgtttttttcaagacagggtttttctatgtaatatccc
tagctggcctggaactcactttgtagaccaagctggcctcaaactcagaa
ataactgctgctgcctcccaagtgctggaatggaaggcatttttttgtgt
ggatgttctgtgtacatgtatgtctgtaccacatgcatgcagtgccctgg
aggccagaggggagggcattggattccctgggaccagagttgtgaaccac
catatggttgctgagaatctgaatgaacaacttttgcaagaataagtcct
tagttgctaaccaaccacgccattcagaattctaaatgtcgttttgtttt
aatcatgttggctttttcttcagagagagaactatgataggtgagacggt
aggatttcagtctgatagtgatacatgaaccatagggctaaattaactct
tcatttccctgtagagaatagtgacattggtacaggaaagaaagaaaagg
aaaagaaaaatagaaagggcaaggacaaggaaaatggctctgtatctacc
agtgagacaccaccacctccaccaccaaatgaaattagtcctccacatgc
tgtggtgagtataatgctattaaaatagtgtgaaaaacctggtattaaag
taaaaaattcctttttaacttaatatacaacgcttaattaaaacagtgtg
ctatttattgggtggtgggggggttgagttgaactaaactgactattttt
ggaatccattttccctgtttagcattttgatttgtttttgtttgcactaa
tgtgaaaggtaacattttgagagttt
gaattcctgtcatacctcacacagttcgctcctccaggcagcctgcctcc
acagaaaggcagggtccctgtgcctcctgtgcactttttgttgcacgttc
cttgcatctagcacctcatgtgtggctggaggctcagggggagcagtctc
cctcaaagccatcttcagcttcttttcctctggggcgtaagtgtgccatt
agttctctgaagctaggctttggactgcaatccctcagagcaggatggag
catgcctttaagtccacaagtggataaacagaggcaggcagagctctgag
acctgcttggtctacaaagtgagttccaaggctagagagagaaactgtca
aagacaaatgactgaagatattctgtcaaacatgcaaggatgaaggcttc
tcttgttcttgctttattagcccaggagtgagtgagtggctgtgagtgaa
cattaaatatgaaagcacagatactgatttttttttgagacagggctgtt
ctggactctctttttagaggaaggatctgcctgagggatctcacagagat
ctgcttgtctctgccttcctcgtgcttggattgaaagggtgtgctgcagc
tggacgtggtggcccatgcctttaatcccagcacttgtgaggcagaggca
ggcgaatttctgagttcgaggccagcctggtctacagagtgagttccagg
acagccagggctacacagagaaaccctgtcttaaacaaacaaacaaacca
aaaaagaaaaagaaaaaaagaaagggtgtgccgccacgcaggacctcacc
tctctatttgtatcaactgcaccatctaccacacttttctacccacgacc
attccctaatgagcatcagatcgaatccaaactttctccctctacacgtt
tcctgatctgtttgtagagaagggacaccgtctttctgtaggctgcattc
ctagaagggggaatgctaggtataggagcaatttaaaattttttacaaaa
tactggccaattactttccagaaaaaattgaagctgttggcagcttgcag
caggcaaggtgcggacgcctactttccacattcaattcacactgggactg
gctgtgtgggcaatttcaaggtttccttgtgtgtgtgtgtggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112779453_112780277
seq2: B6Ng01-072B11.b_45_870

seq1  GAATTCTTAGGGTGTTTTTTTCAAGACAGGGTTTTTCTATGTAATATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGGTGTTTTTTTCAAGACAGGGTTTTTCTATGTAATATCCC  50

seq1  TAGCTGGCCTGGAACTCACTTTGTAGACCAAGCTGGCCTCAAACTCAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGCCTGGAACTCACTTTGTAGACCAAGCTGGCCTCAAACTCAGAA  100

seq1  ATAACTGCTGCTGCCTCCCAAGTGCTGGAATGGAAGGCATTTTTTTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCTGCTGCCTCCCAAGTGCTGGAATGGAAGGCATTTTTTTGTGT  150

seq1  GGATGTTCTGTGTACATGTATGTCTGTACCACATGCATGCAGTGCCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTCTGTGTACATGTATGTCTGTACCACATGCATGCAGTGCCCTGG  200

seq1  AGGCCAGAGGGGAGGGCATTGGATTCCCTGGGACCAGAGTTGTGAACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAGGGGAGGGCATTGGATTCCCTGGGACCAGAGTTGTGAACCAC  250

seq1  CATATGGTTGCTGAGAATCTGAATGAACAACTTTTGCAAGAATAAGTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGGTTGCTGAGAATCTGAATGAACAACTTTTGCAAGAATAAGTCCT  300

seq1  TAGTTGCTAACCAACCACGCCATTCAGAATTCTAAATGTCGTTTTGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGCTAACCAACCACGCCATTCAGAATTCTAAATGTCGTTTTGTTTT  350

seq1  AATCATGTTGGCTTTTTCTTCAGAGAGAGAACTATGATAGGTGAGACGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGTTGGCTTTTTCTTCAGAGAGAGAACTATGATAGGTGAGACGGT  400

seq1  AGGATTTCAGTCTGATAGTGATACATGAACCATAGGGCTAAATTAACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCAGTCTGATAGTGATACATGAACCATAGGGCTAAATTAACTCT  450

seq1  TCATTTCCCTGTAGAGAATAGTGACATTGGTACAGGAAAGAAAGAAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCCTGTAGAGAATAGTGACATTGGTACAGGAAAGAAAGAAAAGG  500

seq1  AAAAGAAAAATAGAAAGGGCAAGGACAAGGAAAATGGCTCTGTATCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAAATAGAAAGGGCAAGGACAAGGAAAATGGCTCTGTATCTACC  550

seq1  AGTGAGACACCACCACCTCCACCACCAAATGAAATTAGTCCTCCACATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACACCACCACCTCCACCACCAAATGAAATTAGTCCTCCACATGC  600

seq1  TGTGGTGAGTATAATGCTATTAAAATAGTGTGAAAAACCTGGTATTAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGAGTATAATGCTATTAAAATAGTGTGAAAAACCTGGTATTAAAG  650

seq1  TAAAAAATTCCTTTTTAACTTAATATACAACGCTTAATTAAAACAGTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTCCTTTTTAACTTAATATACAACGCTTAATTAAAACAGTGTG  700

seq1  CTATTTATTGGGTGGT-GGGGGGTTGAGTTGAACTAAACTGACTATTTTT  749
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTATTTATTGGGTGGTGGGGGGGTTGAGTTGAACTAAACTGACTATTTTT  750

seq1  AGAATCCATTTTCCCTGTTTAGCATTTTGATTTGTTTTTGTTTGCACTAA  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCATTTTCCCTGTTTAGCATTTTGATTTGTTTTTGTTTGCACTAA  800

seq1  TGTGAAAGGTAACATTTTGTGAGTTT  825
      ||||||||||||||||||| ||||||
seq2  TGTGAAAGGTAACATTTTGAGAGTTT  826

seq1: chr12_112911326_112912476
seq2: B6Ng01-072B11.g_68_1216 (reverse)

seq1  CCCCCCCCCACACACACACACAGGGGAAACCTGGAATTTGAC--CACAGC  48
      ||||||||||||||||||||||  |||||||| ||| ||| |  ||||||
seq2  CCCCCCCCCACACACACACACA-AGGAAACCTTGAAATTGCCCACACAGC  49

seq1  CAGTGCCAGGTGTGAATTGGAATGTGTGAAGATAGGCGTTCGCACCTTGC  98
      |||| ||| ||||||||| ||||||| |||  ||||||| ||||||||||
seq2  CAGTCCCA-GTGTGAATT-GAATGTG-GAAAGTAGGCGTCCGCACCTTGC  96

seq1  CTGCTGC-AGCTGCCAGCAGCTTCATCTTTTTCTGGAAAGTAATTTGGCA  147
      ||||||| |||||||| ||||||||  |||||||||||||||||| | ||
seq2  CTGCTGCAAGCTGCCAACAGCTTCAATTTTTTCTGGAAAGTAATTGGCCA  146

seq1  GTATTTGTTAAAAAATTTTTAAATTGCT-CTATGACCTAGCATTCCCACT  196
      ||||||  ||||||| |||||||||||| |||| ||||||||||||| ||
seq2  GTATTTTGTAAAAAA-TTTTAAATTGCTCCTAT-ACCTAGCATTCCCCCT  194

seq1  TCTAGGAATGCAGCCTACAGAAAGACGGTGTCCCTTCTCTACAAACAGAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAATGCAGCCTACAGAAAGACGGTGTCCCTTCTCTACAAACAGAT  244

seq1  CAGGAAACGTGTAGAGGGAGAAAGTTTGGATTCGATCTGATGCTCATTAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAACGTGTAGAGGGAGAAAGTTTGGATTCGATCTGATGCTCATTAG  294

seq1  GGAATGGTCGTGGGTAGAAAAGTGTGGTAGATGGTGCAGTTGATACAAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGTCGTGGGTAGAAAAGTGTGGTAGATGGTGCAGTTGATACAAAT  344

seq1  AGAGAGGTGAGGTCCTGCGTGGCGGCACACCCTTTCTTTTTTTCTTTTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGTGAGGTCCTGCGTGGCGGCACACCCTTTCTTTTTTTCTTTTTC  394

seq1  TTTTTTGGTTTGTTTGTTTGTTTAAGACAGGGTTTCTCTGTGTAGCCCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGTTTGTTTGTTTGTTTAAGACAGGGTTTCTCTGTGTAGCCCTG  444

seq1  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAAT  494

seq1  TCGCCTGCCTCTGCCTCACAAGTGCTGGGATTAAAGGCATGGGCCACCAC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTGCCTCTGCCTCACAAGTGCTGGGATTAAAGGCATGGGCCACCAC  544

seq1  GTCCAGCTGCAGCACACCCTTTCAATCCAAGCACGAGGAAGGCAGAGACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCTGCAGCACACCCTTTCAATCCAAGCACGAGGAAGGCAGAGACA  594

seq1  AGCAGATCTCTGTGAGATCCCTCAGGCAGATCCTTCCTCTAAAAAGAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCTCTGTGAGATCCCTCAGGCAGATCCTTCCTCTAAAAAGAGAG  644

seq1  TCCAGAACAGCCCTGTCTCAAAAAAAAATCAGTATCTGTGCTTTCATATT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACAGCCCTGTCTCAAAAAAAAATCAGTATCTGTGCTTTCATATT  694

seq1  TAATGTTCACTCACAGCCACTCACTCACTCCTGGGCTAATAAAGCAAGAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTCACTCACAGCCACTCACTCACTCCTGGGCTAATAAAGCAAGAA  744

seq1  CAAGAGAAGCCTTCATCCTTGCATGTTTGACAGAATATCTTCAGTCATTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAGCCTTCATCCTTGCATGTTTGACAGAATATCTTCAGTCATTT  794

seq1  GTCTTTGACAGTTTCTCTCTCTAGCCTTGGAACTCACTTTGTAGACCAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGACAGTTTCTCTCTCTAGCCTTGGAACTCACTTTGTAGACCAAG  844

seq1  CAGGTCTCAGAGCTCTGCCTGCCTCTGTTTATCCACTTGTGGACTTAAAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTCAGAGCTCTGCCTGCCTCTGTTTATCCACTTGTGGACTTAAAG  894

seq1  GCATGCTCCATCCTGCTCTGAGGGATTGCAGTCCAAAGCCTAGCTTCAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTCCATCCTGCTCTGAGGGATTGCAGTCCAAAGCCTAGCTTCAGA  944

seq1  GAACTAATGGCACACTTACGCCCCAGAGGAAAAGAAGCTGAAGATGGCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAATGGCACACTTACGCCCCAGAGGAAAAGAAGCTGAAGATGGCTT  994

seq1  TGAGGGAGACTGCTCCCCCTGAGCCTCCAGCCACACATGAGGTGCTAGAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGACTGCTCCCCCTGAGCCTCCAGCCACACATGAGGTGCTAGAT  1044

seq1  GCAAGGAACGTGCAACAAAAAGTGCACAGGAGGCACAGGGACCCTGCCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAACGTGCAACAAAAAGTGCACAGGAGGCACAGGGACCCTGCCTT  1094

seq1  TCTGTGGAGGCAGGCTGCCTGGAGGAGCGAACTGTGTGAGGTATGACAGG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAGGCAGGCTGCCTGGAGGAGCGAACTGTGTGAGGTATGACAGG  1144

seq1  AATTC  1151
      |||||
seq2  AATTC  1149