BAC Information

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BAC

Clone NameB6Ng01-073B06
Chromosome12 (Build37)
Map Location 10,133,205 - 10,288,292
singlet/doubletdoublet
Overlap geneLOC382567
Upstream geneLOC633030, LOC100042238, Osr1
Downstream geneNt5c1b, Rdh14, LOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-073B06.bB6Ng01-073B06.g
ACCDH890313DH890314
length8331,140
definitionDH890313|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B06, 5' end.DH890314|Mus musculus domesticus DNA, BAC clone: B6Ng01-073B06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,133,205 - 10,134,037)(10,287,142 - 10,288,292)
sequence
gaattccaatacgggagcaaatgattatcacaacagggttgagagaaact
tactcaggatcttatcagtttgtgtgagcccatttcagtaacatttatct
aaggtctaaaaattctgcagctaaaattaaaagatgacttttggatcttt
acattcgttttgctctaagaagtagcctgggacttaagactgtttctcaa
agtccatttaacaaatgcatagttactatatagttcagatacatgtttag
gttttactcagaattaataacattttctttttctcatagaagttaattat
aattttaattattcaagtttttcttgtttttactgtgatgtctcttaaaa
caaacaaaactgagtcataatttctgctagttaaataaatgaattctgct
aaagtttaaattatcatcaatcttagccaaagaacaatctattatattag
cagtcactgagtgattagttatttattctcttaaagggaactaaaggaga
ttaatattctggtaagtttgtcactaattactgaggtgtgcctagctttc
tttcatcgtataatgtgtgagacatgaattccattataattacaattagt
gttaatgccttttaaattatatttaatggaaaggtcattattttaagtac
aaataatttttttccacattttaaatgcatagattaatgttgagcaaaga
accattattcaatcaaagcgacatagaggagagcaagatgatgtgttttg
cttctctttcaggcggacttatactttcttttactcaagttctgacaata
ttaggtagctctgggggaagggggtaagggagg
gaattcttcatgggagattagacaaatctatagatcacatttccccacat
taaaggaggcctgttgcaggacgttttccagctgggtaatgagagtaaag
atgaaaaaagatggttctggtgggcctgagaaagatgttgagaatagagg
ccatacaggtaggattgggctgagaagacgaactggtatattggtatcag
aatattggtatgtatcaatagttgaagagctaattctatttttttctatc
ctgtccctaatttataacagatggtatctgtgctgtaaaatagaagaata
atgaggttgaggaaattatttctcactaaatatggggaagtcagtttctt
ccctatacagcataatatgcaccatcagtcccgttactagtaagaactac
tgttgttatgtgagtgcagccatttcatctgagcctttcaggtctcaact
tacacactgaactgtatgcatgaagatagaaaagtatttaaagtttactt
catttattttaattttcttggtcttcattatctcatgtgcatgtgaaatt
aaatataacagatttttaaacaatccctatgtaagtttaagtgcatgttt
aatctgaggaaagccaaaggaacagggtcccttcctggtgttacaaacca
tgtattgtacactaagcattgtgctacccaacttcttaaaaccattcgtt
ttattctcataataaatatgtggctaataatcatgtggcataaacaaaca
aggtattgcctacttttgagggaagaaagaaaaatgtcttaacatatatt
aaagaagaataagaaacaaacactttcaggatagcatttgaaatgtaaat
gaagaaaatacctaataaaacttgggaaaaaatcaatttctcacacagtc
tctatactggccatgcgcagcaagcatggggacttttgcttactctgcta
cttagctgctttcctatcttttaaattttaaccctccaattactataaac
agactaatatctcccaaatgttccctacacattctttatgcagtggtagt
ggatgggggcacgtcggttcagaaacttatttctcctctggaacatcatg
gtggtacacatgtgtggcatgatgacaacagtaactagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_10133205_10134037
seq2: B6Ng01-073B06.b_45_877

seq1  GAATTCCAATACGGGAGCAAATGATTATCACAACAGGGTTGAGAGAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATACGGGAGCAAATGATTATCACAACAGGGTTGAGAGAAACT  50

seq1  TACTCAGGATCTTATCAGTTTGTGTGAGCCCATTTCAGTAACATTTATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGGATCTTATCAGTTTGTGTGAGCCCATTTCAGTAACATTTATCT  100

seq1  AAGGTCTAAAAATTCTGCAGCTAAAATTAAAAGATGACTTTTGGATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTAAAAATTCTGCAGCTAAAATTAAAAGATGACTTTTGGATCTTT  150

seq1  ACATTCGTTTTGCTCTAAGAAGTAGCCTGGGACTTAAGACTGTTTCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCGTTTTGCTCTAAGAAGTAGCCTGGGACTTAAGACTGTTTCTCAA  200

seq1  AGTCCATTTAACAAATGCATAGTTACTATATAGTTCAGATACATGTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATTTAACAAATGCATAGTTACTATATAGTTCAGATACATGTTTAG  250

seq1  GTTTTACTCAGAATTAATAACATTTTCTTTTTCTCATAGAAGTTAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACTCAGAATTAATAACATTTTCTTTTTCTCATAGAAGTTAATTAT  300

seq1  AATTTTAATTATTCAAGTTTTTCTTGTTTTTACTGTGATGTCTCTTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATTATTCAAGTTTTTCTTGTTTTTACTGTGATGTCTCTTAAAA  350

seq1  CAAACAAAACTGAGTCATAATTTCTGCTAGTTAAATAAATGAATTCTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAACTGAGTCATAATTTCTGCTAGTTAAATAAATGAATTCTGCT  400

seq1  AAAGTTTAAATTATCATCAATCTTAGCCAAAGAACAATCTATTATATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAAATTATCATCAATCTTAGCCAAAGAACAATCTATTATATTAG  450

seq1  CAGTCACTGAGTGATTAGTTATTTATTCTCTTAAAGGGAACTAAAGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACTGAGTGATTAGTTATTTATTCTCTTAAAGGGAACTAAAGGAGA  500

seq1  TTAATATTCTGGTAAGTTTGTCACTAATTACTGAGGTGTGCCTAGCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATTCTGGTAAGTTTGTCACTAATTACTGAGGTGTGCCTAGCTTTC  550

seq1  TTTCATCGTATAATGTGTGAGACATGAATTCCATTATAATTACAATTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCGTATAATGTGTGAGACATGAATTCCATTATAATTACAATTAGT  600

seq1  GTTAATGCCTTTTAAATTATATTTAATGGAAAGGTCATTATTTTAAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGCCTTTTAAATTATATTTAATGGAAAGGTCATTATTTTAAGTAC  650

seq1  AAATAATTTTTTTCCACATTTTAAATGCATAGATTAATGTTGAGCAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTTTTCCACATTTTAAATGCATAGATTAATGTTGAGCAAAGA  700

seq1  ACCATTATTCAATCAAAGCGACATAGAGGAGAGCAAGATGATGTGTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTATTCAATCAAAGCGACATAGAGGAGAGCAAGATGATGTGTTTTG  750

seq1  CTTCTCTTTCAGGCGGACTTATACTTTCTTTTACTCAAGTTCTGACAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTTTCAGGCGGACTTATACTTTCTTTTACTCAAGTTCTGACAATA  800

seq1  TTAGGTAGCTCTGGGGGCAGGGGGTAAGGGAGG  833
      ||||||||||||||||| |||||||||||||||
seq2  TTAGGTAGCTCTGGGGGAAGGGGGTAAGGGAGG  833

seq1: chr12_10287142_10288292
seq2: B6Ng01-073B06.g_69_1208 (reverse)

seq1  CACTAGTTACATTGTTTGTCATCATG-CACACATGTGTACACACATGATG  49
      ||||||||||  || ||||||||||| |||||||||||||   |||||||
seq2  CACTAGTTAC--TG-TTGTCATCATGCCACACATGTGTACCACCATGATG  47

seq1  TTTACAGAGAAGAAATAAAGTATTCTGAACAGACGTGCTCCCATCACATA  99
       || ||||| |||||| |||| |||||||| ||||||| ||||||   ||
seq2  -TTCCAGAGGAGAAAT-AAGT-TTCTGAACCGACGTGCCCCCATCCACTA  94

seq1  CAACTGCATAAAGGAAATGTGTAGGGGAACATTTGGGAGATATTAGTCTG  149
      | |||||||||||  |||||||| ||||||||||||||||||||||||||
seq2  CCACTGCATAAAG--AATGTGTA-GGGAACATTTGGGAGATATTAGTCTG  141

seq1  TTTATAAGTAATTGGAGGGTTAAAATTTAAAAAGATAGGAAAGCAGCTAA  199
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTAT-AGTAATTGGAGGGTTAAAATTT-AAAAGATAGGAAAGCAGCTAA  189

seq1  GTAGCAGAGTAAGCAAAAGTCCCCATGCTTGCTGCGCATGGCCAGTATAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGAGTAAGCAAAAGTCCCCATGCTTGCTGCGCATGGCCAGTATAG  239

seq1  AGACTGTGTGAGAAATTGATTTTTTTCCAAGTTTTTATTAGGTATTTTCT  299
      ||||||||||||||||||||||||| ||||| ||||||||||||||||||
seq2  AGACTGTGTGAGAAATTGATTTTTTCCCAAG-TTTTATTAGGTATTTTCT  288

seq1  TCATTTACATTTCAAATGCTATCCTGAAAGTGTTTGTTTCTTATTCTTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTACATTTCAAATGCTATCCTGAAAGTGTTTGTTTCTTATTCTTCT  338

seq1  TTAATATATGTTAAGACATTTTTCTTTCTTCCCTCAAAAGTAGGCAATAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATATGTTAAGACATTTTTCTTTCTTCCCTCAAAAGTAGGCAATAC  388

seq1  CTTGTTTGTTTATGCCACATGATTATTAGCCACATATTTATTATGAGAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTGTTTATGCCACATGATTATTAGCCACATATTTATTATGAGAAT  438

seq1  AAAACGAATGGTTTTAAGAAGTTGGGTAGCACAATGCTTAGTGTACAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGAATGGTTTTAAGAAGTTGGGTAGCACAATGCTTAGTGTACAATA  488

seq1  CATGGTTTGTAACACCAGGAAGGGACCCTGTTCCTTTGGCTTTCCTCAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTGTAACACCAGGAAGGGACCCTGTTCCTTTGGCTTTCCTCAGA  538

seq1  TTAAACATGCACTTAAACTTACATAGGGATTGTTTAAAAATCTGTTATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATGCACTTAAACTTACATAGGGATTGTTTAAAAATCTGTTATAT  588

seq1  TTAATTTCACATGCACATGAGATAATGAAGACCAAGAAAATTAAAATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCACATGCACATGAGATAATGAAGACCAAGAAAATTAAAATAAA  638

seq1  TGAAGTAAACTTTAAATACTTTTCTATCTTCATGCATACAGTTCAGTGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTAAACTTTAAATACTTTTCTATCTTCATGCATACAGTTCAGTGTG  688

seq1  TAAGTTGAGACCTGAAAGGCTCAGATGAAATGGCTGCACTCACATAACAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGAGACCTGAAAGGCTCAGATGAAATGGCTGCACTCACATAACAA  738

seq1  CAGTAGTTCTTACTAGTAACGGGACTGATGGTGCATATTATGCTGTATAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTCTTACTAGTAACGGGACTGATGGTGCATATTATGCTGTATAG  788

seq1  GGAAGAAACTGACTTCCCCATATTTAGTGAGAAATAATTTCCTCAACCTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAACTGACTTCCCCATATTTAGTGAGAAATAATTTCCTCAACCTC  838

seq1  ATTATTCTTCTATTTTACAGCACAGATACCATCTGTTATAAATTAGGGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTCTATTTTACAGCACAGATACCATCTGTTATAAATTAGGGAC  888

seq1  AGGATAGAAAAAAATAGAATTAGCTCTTCAACTATTGATACATACCAATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAGAAAAAAATAGAATTAGCTCTTCAACTATTGATACATACCAATA  938

seq1  TTCTGATACCAATATACCAGTTCGTCTTCTCAGCCCAATCCTACCTGTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATACCAATATACCAGTTCGTCTTCTCAGCCCAATCCTACCTGTAT  988

seq1  GGCCTCTATTCTCAACATCTTTCTCAGGCCCACCAGAACCATCTTTTTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTATTCTCAACATCTTTCTCAGGCCCACCAGAACCATCTTTTTTC  1038

seq1  ATCTTTACTCTCATTACCCAGCTGGAAAACGTCCTGCAACAGGCCTCCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTACTCTCATTACCCAGCTGGAAAACGTCCTGCAACAGGCCTCCTT  1088

seq1  TAATGTGGGGAAATGTGATCTATAGATTTGTCTAATCTCCCATGAAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGGGGAAATGTGATCTATAGATTTGTCTAATCTCCCATGAAGAAT  1138

seq1  TC  1151
      ||
seq2  TC  1140