BAC Information

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BAC

Clone NameB6Ng01-074A24
Chromosome12 (Build37)
Map Location 80,265,747 - 80,406,507
singlet/doubletdoublet
Overlap geneVti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
Upstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2
Downstream geneLOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074A24.bB6Ng01-074A24.g
ACCDH891015DH891016
length1,1631,058
definitionDH891015|Mus musculus domesticus DNA, BAC clone: B6Ng01-074A24, 5' end.DH891016|Mus musculus domesticus DNA, BAC clone: B6Ng01-074A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,405,357 - 80,406,507)(80,265,747 - 80,267,155)
sequence
gaattcaaacagaattagcaaaatgacaaggtgtggggcagagagggggg
aaatacatgcattggctacccttctttagattaattttttttctgtgtaa
gtaaatttacaactccattaatattacaatccttaattgacctgatccag
cctcatctcaaaaatgattgtagaaaaatttaattctggcaccatctggt
ggcaacgcatgacaacaacagcccttcaattagcttatccattcttcaac
tatttatttaataggcatctactagacatagcagtctttaaatctctcta
ggaatataagaaataaaatattccctaagacagggttcctatctttaaga
aaaaaatcatttaaattatgattatgagaactgtaagaaactgctggaat
atagctcagtgaaccagacattgcataaaatgcttgaagccatgggttca
aaacccagcacctcatgacgcatgtgccgtgtgcatgtgcacacacactc
acacacacactcacactcactaacatgcaacatgtctgctcctagaactt
tgcttccaaacttttctggcaaggaattcttacaggcttccatacacacc
atacacaccaatatacaccatacacaccaatatacaccatacacaccaat
atacaccatatacaccaatgcagctttcaaagtaaagagccacagtgctc
ttgaaacatcattcagaaggcacagcctaattttcccttccctgaccgtg
agcttggtggggctcacttacaatgaagagaacctgtcataagcagtggt
atgatcgccaaggacatcaccacgtccactgacagaagcgaacaaggaca
tcatgataagatacaggcagactgtgaagaccccagttaggggggaaaaa
ataccataaaacagcaccagtctgccagctgcgagggtaagcctccctag
gagttagcgtctctgggtttcttacaccgtggctgactgcaggcattgcc
aacatggcttaggctcagacactccagaagacacggagagtcagtgttta
ttgttgctttaaggccgcttagccttggaggatagcttcactgtacaact
acttagaaataacacagttaagtattcggctttctagaatcaaggcttat
ccaaatagcaggg
gaattctaggcacatagttagacagattggagtttaaaagcagcaagtag
agtggagaatggcaactagaggcaggaaagaggccaagagtaagaaaaca
gaaacccgagacttcaatatacattgacaacataaaccctctagttcttg
taccacaggcccgtaaggaaggagcagctaacacttaccaaatgctcgtt
ctccaaggtatacgtgccatacttcaggtctcctcggcctccaggagcgg
ctgtcagaggtgtacttctcacctcacggtggagtttagcaaggtccttc
cggtagtttctcagcttagacatcatggggttacggaaagtcaggggtgc
atatcgtagttcttcctccatctctgccaactaggaaagccaaaagggat
aagtagacagcctttttttcccctaacctgggcataggtatccaaaataa
caagtatgtttttgtggcagaggccacaaacgccacatccacttgaagtg
cctgacatagtttctagcagacattcactcacgaaagcatgtggtgggct
ggagagacaggaaggtgcttgccctgcaaatgtgaggacctaaattcaat
gtccagaaccatgcagataacactggggatggcagcgtgtgcttatagtc
ccagtgctggctggcaagttccagggcaatgacaaaaccggttttaaaga
ctaaagagaaagaaaaggcaaggtggatggaatttgaagaaggagatcac
atgcatgtgcagccacacaagacacatgcactttcacaacaaacacaagt
atttgatgaatgcaccagtggtagcaagcatgcataaaagacctaggctc
tatacctaacaatgcaaataagagcatgtacatagatgcatgctccgtga
aattatatatcttctgtgtcagtaagtttaaccaaagtcagttactgatc
tcagtgggcagcttcagcaaaggtacgggaaatgcccctactactcatac
tcggaatgtgtcagccaaaggctttgtactttcagaaatcctttcaaacc
tttaccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_80405357_80406507
seq2: B6Ng01-074A24.b_40_1202 (reverse)

seq1  CCCTGCTATT--GATAGCCTTTGATTCTAGGAAG-CGATAACTT-ACTGT  46
      ||||||||||  ||||  | |||||||||| ||| |||  |||| |||||
seq2  CCCTGCTATTTGGATAAGCCTTGATTCTAGAAAGCCGAATACTTAACTGT  50

seq1  GTTATCT-TATGTAGTTGTACAGTG-AGCTATCCTC--AAGCTAAGCGG-  91
      ||||| | || |||||||||||||| ||||||||||  | ||||||||| 
seq2  GTTATTTCTAAGTAGTTGTACAGTGAAGCTATCCTCCAAGGCTAAGCGGC  100

seq1  CTTAAAGCAACAATAAACACTGACTTCTCCGTGTCTTCTGGAGTGTCTGA  141
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTAAAGCAACAATAAACACTGAC-TCTCCGTGTCTTCTGGAGTGTCTGA  149

seq1  G-CTTAGCCATGTTGGCAATGCCTGCAGTCAGCCACGGTGTAAGAAACCC  190
      | || |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGCCATGTTGGCAATGCCTGCAGTCAGCCACGGTGTAAGAAACCC  199

seq1  AGAGACGCTAACTCCTA-GGAGGCTTACCCTCGCAGCTGGCAGACTGGTG  239
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGACGCTAACTCCTAGGGAGGCTTACCCTCGCAGCTGGCAGACTGGTG  249

seq1  CTGTTTTATGGTATTTTTT-CCCCCTAACTGGGGTCTTCACAGTCTGCCT  288
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGTTTTATGGTATTTTTTCCCCCCTAACTGGGGTCTTCACAGTCTGCCT  299

seq1  GTATCTTATCATGATGTCCTTGTTCGCTTCTGTCAGTGGACGTGGTGATG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTATCATGATGTCCTTGTTCGCTTCTGTCAGTGGACGTGGTGATG  349

seq1  TCCTTGGCGATCATACCACTGCTTATGACAGGTTCTCTTCATTGTAAGTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGCGATCATACCACTGCTTATGACAGGTTCTCTTCATTGTAAGTG  399

seq1  AGCCCCACCAAGCTCACGGTCAGGGAAGGGAAAATTAGGCTGTGCCTTCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCACCAAGCTCACGGTCAGGGAAGGGAAAATTAGGCTGTGCCTTCT  449

seq1  GAATGATGTTTCAAGAGCACTGTGGCTCTTTACTTTGAAAGCTGCATTGG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATGTTTCAAGAGCACTGTGGCTCTTTACTTTGAAAGCTGCATTGG  499

seq1  TGTATATGGTGTATATTGGTGTGTATGGTGTATATTGGTGTGTATGGTGT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGGTGTATATTGGTGTGTATGGTGTATATTGGTGTGTATGGTGT  549

seq1  ATATTGGTGTGTATGGTGTGTATGGAAGCCTGTAAGAATTCCTTGCCAGA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGTGTGTATGGTGTGTATGGAAGCCTGTAAGAATTCCTTGCCAGA  599

seq1  AAAGTTTGGAAGCAAAGTTCTAGGAGCAGACATGTTGCATGTTAGTGAGT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGGAAGCAAAGTTCTAGGAGCAGACATGTTGCATGTTAGTGAGT  649

seq1  GTGAGTGTGTGTGTGAGTGTGTGTGCACATGCACACGGCACATGCGTCAT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGTGTGTGAGTGTGTGTGCACATGCACACGGCACATGCGTCAT  699

seq1  GAGGTGCTGGGTTTTGAACCCATGGCTTCAAGCATTTTATGCAATGTCTG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTGGGTTTTGAACCCATGGCTTCAAGCATTTTATGCAATGTCTG  749

seq1  GTTCACTGAGCTATATTCCAGCAGTTTCTTACAGTTCTCATAATCATAAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTGAGCTATATTCCAGCAGTTTCTTACAGTTCTCATAATCATAAT  799

seq1  TTAAATGATTTTTTTCTTAAAGATAGGAACCCTGTCTTAGGGAATATTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGATTTTTTTCTTAAAGATAGGAACCCTGTCTTAGGGAATATTTT  849

seq1  ATTTCTTATATTCCTAGAGAGATTTAAAGACTGCTATGTCTAGTAGATGC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATATTCCTAGAGAGATTTAAAGACTGCTATGTCTAGTAGATGC  899

seq1  CTATTAAATAAATAGTTGAAGAATGGATAAGCTAATTGAAGGGCTGTTGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAATAAATAGTTGAAGAATGGATAAGCTAATTGAAGGGCTGTTGT  949

seq1  TGTCATGCGTTGCCACCAGATGGTGCCAGAATTAAATTTTTCTACAATCA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATGCGTTGCCACCAGATGGTGCCAGAATTAAATTTTTCTACAATCA  999

seq1  TTTTTGAGATGAGGCTGGATCAGGTCAATTAAGGATTGTAATATTAATGG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAGATGAGGCTGGATCAGGTCAATTAAGGATTGTAATATTAATGG  1049

seq1  AGTTGTAAATTTACTTACACAGAAAAAAAATTAATCTAAAGAAGGGTAGC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAAATTTACTTACACAGAAAAAAAATTAATCTAAAGAAGGGTAGC  1099

seq1  CAATGCATGTATTTCCCCCCTCTCTGCCCC-CACCTTGTCATTTTGCTAA  1137
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAATGCATGTATTTCCCCCCTCTCTGCCCCACACCTTGTCATTTTGCTAA  1149

seq1  TTCTGTTTGAATTC  1151
      ||||||||||||||
seq2  TTCTGTTTGAATTC  1163

seq1: chr12_80265747_80267155
seq2: B6Ng01-074A24.g_66_1110

seq1  GAATTCTAGGCACATAGTTAGACAGATTGGAGTTTAAAAGCAGCAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCACATAGTTAGACAGATTGGAGTTTAAAAGCAGCAAGTAG  50

seq1  AGTGGAGAATGGCAACTAGAGGCAGGAAAGAGGCCAAGAGTAAGAAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAGAATGGCAACTAGAGGCAGGAAAGAGGCCAAGAGTAAGAAAACA  100

seq1  GAAACCCGAGACTTCAATATACATTGACAACATAAACCCTCTAGTTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCGAGACTTCAATATACATTGACAACATAAACCCTCTAGTTCTTG  150

seq1  TACCACAGGCCCGTAAGGAAGGAGCAGCTAACACTTACCAAATGCTCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGGCCCGTAAGGAAGGAGCAGCTAACACTTACCAAATGCTCGTT  200

seq1  CTCCAAGGTATACGTGCCATACTTCAGGTCTCCTCGGCCTCCAGGAGCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGTATACGTGCCATACTTCAGGTCTCCTCGGCCTCCAGGAGCGG  250

seq1  CTGTCAGAGGTGTACTTCTCACCTCACGGTGGAGTTTAGCAAGGTCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGAGGTGTACTTCTCACCTCACGGTGGAGTTTAGCAAGGTCCTTC  300

seq1  CGGTAGTTTCTCAGCTTAGACATCATGGGGTTACGGAAAGTCAGGGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGTTTCTCAGCTTAGACATCATGGGGTTACGGAAAGTCAGGGGTGC  350

seq1  ATATCGTAGTTCTTCCTCCATCTCTGCCAACTAGGAAAGCCAAAAGGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGTAGTTCTTCCTCCATCTCTGCCAACTAGGAAAGCCAAAAGGGAT  400

seq1  AAGTAGACAGCCTTTTTTTCCCCTAACCTGGGCATAGGTATCCAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGACAGCCTTTTTTTCCCCTAACCTGGGCATAGGTATCCAAAATAA  450

seq1  CAAGTATGTTTTTGTGGCAGAGGCCACAAACGCCACATCCACTTGAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGTTTTTGTGGCAGAGGCCACAAACGCCACATCCACTTGAAGTG  500

seq1  CCTGACATAGTTTCTAGCAGACATTCACTCACGAAAGCATGTGGTGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATAGTTTCTAGCAGACATTCACTCACGAAAGCATGTGGTGGGCT  550

seq1  GGAGAGACAGGAAGGTGCTTGCCCTGCAAATGTGAGGACCTAAATTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGACAGGAAGGTGCTTGCCCTGCAAATGTGAGGACCTAAATTCAAT  600

seq1  GTCCAGAACCATGCAGATAACACTGGGGATGGCAGCGTGTGCTTATAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAACCATGCAGATAACACTGGGGATGGCAGCGTGTGCTTATAGTC  650

seq1  CCAGTGCTGGCTGGCAAGTTCCAGGGCAATGACAAAACCGGTTTTAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCTGGCTGGCAAGTTCCAGGGCAATGACAAAACCGGTTTTAAAGA  700

seq1  CTAAAGAGAAAGAAAAGGCAAGGTGGATGGAATTTGAAGAAGGAGATCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGAAAGAAAAGGCAAGGTGGATGGAATTTGAAGAAGGAGATCAC  750

seq1  ATGCATGTGCAGCCACACAAGACACATGCACTTTCACAACAAACACAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGCAGCCACACAAGACACATGCACTTTCACAACAAACACAAGT  800

seq1  ATTTGATGAATGCACCAGTGGTAGCAAGCATGCAT-AAAGACCTAGGCTC  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTGATGAATGCACCAGTGGTAGCAAGCATGCATAAAAGACCTAGGCTC  850

seq1  TATACCTAACAATGCAAATAAGAGCATGTACATAGATGCATGCTCCGTG-  898
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATACCTAACAATGCAAATAAGAGCATGTACATAGATGCATGCTCCGTGA  900

seq1  AATTATATATCTTCTGTGTCAGTAAGTTTAACCAAGGTCAGTAACTGATC  948
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  AATTATATATCTTCTGTGTCAGTAAGTTTAACCAAAGTCAGTTACTGATC  950

seq1  TCAGTGGGCAGCTTCAGCAAAGGTACGGG-AATGCCCCTACTACTCATAC  997
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCAGTGGGCAGCTTCAGCAAAGGTACGGGAAATGCCCCTACTACTCATAC  1000

seq1  TCGGAATGTGTCAG-CAAAGGC-TTGTAC-TTCAGAAATC--TTCAAACT  1042
      |||||||||||||| ||||||| |||||| ||||||||||  |||     
seq2  TCGGAATGTGTCAGCCAAAGGCTTTGTACTTTCAGAAATCCTTTC-----  1045

seq1  TTACCTATTTGTGTTGTTAAGCCAGCTCAACACCCATTCCCACAAGTTAG  1092
                                                        
seq2  --------------------------------------------------  1045

seq1  CCTCATTTAATAAGTGCAATGGTTAGTGCTGTTAACTTGATAGGATCTAG  1142
                                                        
seq2  --------------------------------------------------  1045

seq1  AATCACCTAGGAAGACAAACTTCTGGACACACCTGTTAGCCTAGGTTAGT  1192
                                                        
seq2  --------------------------------------------------  1045

seq1  CTCTGGGGGATTATCTTGACTGTATCACTCAAAAATCCAAAGGCCTCCCC  1242
                                                        
seq2  --------------------------------------------------  1045

seq1  ACTGTGGGTAGCACCATCCCCTACCTAGGATCTGGGATAGAGTGGAGACA  1292
                                                        
seq2  --------------------------------------------------  1045

seq1  GGGAGCTAAGCAGTAGCATGCATTCACCATCACTCTCTGTGATGTGATCA  1342
                                                        
seq2  --------------------------------------------------  1045

seq1  ACTGCTTCAAGTTCCTACTGCTTTGACTTCTCTACCACATGAACTGTGAG  1392
                                                        
seq2  --------------------------------------------------  1045

seq1  CCAGAACAAATCCTTTC  1409
                       
seq2  -----------------  1045