BAC Information

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BAC

Clone NameB6Ng01-074C22
Chromosome12 (Build37)
Map Location 55,374,282 - 55,559,079
singlet/doubletdoublet
Overlap geneEG665239, EG665251, LOC665256
Upstream geneNpas3, Egln3
Downstream geneLOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074C22.bB6Ng01-074C22.g
ACCDH891104DH891105
length4681,036
definitionDH891104|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C22, 5' end.DH891105|Mus musculus domesticus DNA, BAC clone: B6Ng01-074C22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,374,282 - 55,374,516)(55,558,314 - 55,559,079)
sequence
gaattctaggccagagagaaacaactttttcaagacaacaataataacaa
tgataatccagaagtgtgagttttgctggtatgtgcctgggatcctagca
ctcaggaggcagaggcaaaaggactccaagttcaaggctagtctgaactc
catggattcaaggctatccaaggctaggtgataagattctgaacttaaga
ataaaggaaaggaaaggagaggagaggagaggggatgatgctggtagagg
attttaagaaggacactagtaactctcttaaagaaatacaggagaacact
gctaaacaggtagaagtcctttaagaggaaccacacacacacacaaaaaa
cctaaagaattacaggaaaacacaacaaaacaggtgatggaattgaacaa
aaccatccaagatctagaaatggaagtagaaacaataaagaaaacccaaa
gggagacaactctggaga
gaattctgtaagaaggacgtttccagcctggaagacctcactgagattcg
tctgactggatgggaattggcccacgtggaggctacctcgtgatgagatt
ttagaatattgagaacggagtttctattctagaaactgaacgggagacca
caagaaggagtagcctcagaatggcactggtttcccacatttcaaattct
agggagatatggtggttagccttgaccttaacagccattcaaaataccga
aaggacgtaagggaagagcaagcataccaaatgcttaaaaccacttcctt
tccagaaagttcttaggaaacagcaggtacatgtgtcccaggtataaggg
tattaaaccaagaaagggagagttttaagacacagaaatctggaagcaaa
aggagtcttcagaagggcaggtgaagggagacaccaggaaggaagcctag
ctggagtggaacaggccagaagctgcgagatgctcccacaagcccaggaa
gatggaactgagggcgtgtcctatgtatcaaatgtcctgagagatttaca
gggcggtcagagttaggcattcaattaatgataaacacacatagaaaatt
tttaaatgaaagcaagggcacagttttttttttttttcagagagactaaa
aaacattgtgagggaaaggcaaatgttattacctggctcatctgtgacta
acatttaaatagaaatactattacaaatccaaatactggtctatttaaaa
ctgtgattaagatgtacatggggtaaagtagcatagatataaaaataaaa
atactaggttttatgggaaagaagttaagtaaatattatttggcttcaaa
ctaaaaggaccaactcattttttttttaaagcaagtggtagaacatgaaa
ttgccatgtagaccaccaaagagattgatcagatatagtgacaaggttga
aagtacctccacaatggagagaggctgcgagaagaccagggactgccacc
tttaataattaaccatatagaatatctgacctatta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_55374282_55374516
seq2: B6Ng01-074C22.b_46_280

seq1  GAATTCTAGGCCAGAGAGAAACAACTTTTTCAAGACAACAATAATAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCCAGAGAGAAACAACTTTTTCAAGACAACAATAATAACAA  50

seq1  TGATAATCCAGAAGTGTGAGTTTTGCTGGTATGTGCCTGGGATCCTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATCCAGAAGTGTGAGTTTTGCTGGTATGTGCCTGGGATCCTAGCA  100

seq1  CTCAGGAGGCAGAGGCAAAAGGACTCCAAGTTCAAGGCTAGTCTGAACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGCAGAGGCAAAAGGACTCCAAGTTCAAGGCTAGTCTGAACTC  150

seq1  CATGGATTCAAGGCTATCCAAGGCTAGGTGATAAGATTCTGAACTTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATTCAAGGCTATCCAAGGCTAGGTGATAAGATTCTGAACTTAAGA  200

seq1  ATAAAGGAAAGGAAAGGAGAGGAGAGGAGAGGGGA  235
      |||||||||||||||||||||||||||||||||||
seq2  ATAAAGGAAAGGAAAGGAGAGGAGAGGAGAGGGGA  235

seq1: chr12_55558314_55559079
seq2: B6Ng01-074C22.g_329_1103 (reverse)

seq1  TAATA-GTCAGATAATTCTATATGGTTTATTATTAAAAAGGTGGCAGTCC  49
      ||||| ||||||| ||||||||||||| ||||||  ||||||||||||||
seq2  TAATAGGTCAGAT-ATTCTATATGGTTAATTATT--AAAGGTGGCAGTCC  47

seq1  CT-GTC-TCTCGCAGCCTCTTCTCCATTGT-GAGGTACTTTCAACCTTGT  96
      || ||| |||||||||||| |||||||||| |||||||||||||||||||
seq2  CTGGTCTTCTCGCAGCCTC-TCTCCATTGTGGAGGTACTTTCAACCTTGT  96

seq1  CACTAATATCTGATCAATCTC-TTGGT-GTCTACAATGGCAATTTCATGT  144
      |||| |||||||||||||||| ||||| |||||| |||||||||||||||
seq2  CACT-ATATCTGATCAATCTCTTTGGTGGTCTAC-ATGGCAATTTCATGT  144

seq1  TCTACCACTTGCTTTAAAAAAAAAATGAGTTGGTCC-TTTAGTTTG-AGC  192
      |||||||||||||||||||||||||||||||||||| ||||||||| |||
seq2  TCTACCACTTGCTTTAAAAAAAAAATGAGTTGGTCCTTTTAGTTTGAAGC  194

seq1  C-AATAATATTTAC-TAACTTC-TTCCCATAAAACCTAGTA-TTTTATTT  238
      | |||||||||||| ||||||| |||||||||||||||||| ||||||||
seq2  CAAATAATATTTACTTAACTTCTTTCCCATAAAACCTAGTATTTTTATTT  244

seq1  TTATATCTATGCTACTTTA-CCCATGTACATCTTAATCACAGTTTTAAAT  287
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTATATCTATGCTACTTTACCCCATGTACATCTTAATCACAGTTTTAAAT  294

seq1  AGACCAGTATTTGGATTTGTAATAGTATTTCTATTTAAATGTTAGTCACA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTATTTGGATTTGTAATAGTATTTCTATTTAAATGTTAGTCACA  344

seq1  GATGAGCCAGGTAATAACATTTGCCTTTCCCTCACAATGTTTTTTAGTCT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCCAGGTAATAACATTTGCCTTTCCCTCACAATGTTTTTTAGTCT  394

seq1  CTCTG-AAAAAAAAAAAAACTGTGCCCTTGCTTTCATTT-AAAATTTTCT  435
      ||||| ||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTCTGAAAAAAAAAAAAAACTGTGCCCTTGCTTTCATTTAAAAATTTTCT  444

seq1  ATGTGTGTTTATCATTAATTGAATGCCTAACTCTGACCGCCCTGTAAATC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTTTATCATTAATTGAATGCCTAACTCTGACCGCCCTGTAAATC  494

seq1  TCTCAGGACATTTGATACATAGGACACGCCCTCAGTTCCATCTTCCTGGG  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGGACATTTGATACATAGGACACGCCCTCAGTTCCATCTTCCTGGG  544

seq1  CTTGTGGGAGCATCTCGCAGCTTCTGGCCTGTTCCACTCCAGCTAGGCTT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGAGCATCTCGCAGCTTCTGGCCTGTTCCACTCCAGCTAGGCTT  594

seq1  CCTTCCTGGTGTCTCCCTTCACCTGCCCTTCTGAAGACTCCTTTTGCTTC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTGGTGTCTCCCTTCACCTGCCCTTCTGAAGACTCCTTTTGCTTC  644

seq1  CAGATTTCTGTGTCTTAAAACTCTCCCTTTCTTGGTTTAATACCCTTATA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTCTGTGTCTTAAAACTCTCCCTTTCTTGGTTTAATACCCTTATA  694

seq1  CCTGGGACACATGTACCTGCTGTTTCCTAAGAACTTTCTGGAAAGGAAGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACACATGTACCTGCTGTTTCCTAAGAACTTTCTGGAAAGGAAGT  744

seq1  GGTTTTAAGCATTTGGTATGCTTGCTCTTCC  766
      |||||||||||||||||||||||||||||||
seq2  GGTTTTAAGCATTTGGTATGCTTGCTCTTCC  775