BAC Information

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BAC

Clone NameB6Ng01-074D08
Chromosome12 (Build37)
Map Location 34,260,746 - 34,375,713
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074D08.bB6Ng01-074D08.g
ACCDH891124DH891125
length1,182989
definitionDH891124|Mus musculus domesticus DNA, BAC clone: B6Ng01-074D08, 5' end.DH891125|Mus musculus domesticus DNA, BAC clone: B6Ng01-074D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,260,746 - 34,261,926)(34,374,731 - 34,375,713)
sequence
gaattcagaaagagctagaaagggtaagctgattcagcaacaagcctctg
agatgacaataacatctggtgaataaaagttacttttacataatttcagc
tcatcaattttttcattgttgtagcctttaacgatcctttattctccaac
tgtattctcctgaatacagtaaatctctttagtatttccttgaataaata
tacaatttgataaggcattgaataagtttttcattttgtacttgatagaa
acctttaaatattactaaaagcctcagttgcttaatatcacactattctg
tatgaataccacaataatttatttctaaagtccacttaataattttatac
tgctcatttttgtaatgttattttaatatgaacaatttaataaaaattaa
taaccatatgcatatctagtataatcatctttaaaattctatctagatat
aaaatcaaaagtcaaaaaaataagtataagatatatccagcgctacttaa
atataactgtatattttaaaagccattctatgttaatttaattatatcct
aatttcaaattttgatatatccagggtgcagtgataaaattcaacatcta
ctctttaagactgttaagaaattaagtatgcagagctaggagtatggctc
aatgtgtgtttcctgtataaacatgaagacctaagttggatcagtagtac
tcatgtaataagagctaagaatggctgtgtgtatctgtaactcatatgcc
ctggggattggtgacaggattgtgagatcttgctaaatagtctaaatgaa
aaccagcaatcatcgcaaggttcgttgagagactttaactaaaaagggtt
agagttgggtatcagatacccttctctgacctctgtaagcatacacaaat
acatgcacatccatgtgactgtaaacacacacacacacacacacacacac
acacacacacaggagtcagacagtcagacattaaatagttttaaagagaa
tttcagcagaatattgctcatcccagtgttagcttattaggaaacatcta
gataacagacaaggtgttgggacgatgtggtcatgctagttattacttta
acttttttgatgaaagaagaaaaaagcttgacctggtttattttataaat
tttcttgaatattcatcaaaggacaaagtatt
gaattcaactgcccttggaaggcaaaagaaagcacaagataccctgaaat
tggggttacaggcatttgtaagctacatgatgttggtgctggaaattaaa
catgggtcatctggagagtagcagtgttattaattgttaaaccatctctt
cagaccccagaggatgcacttttggaattggtgtcatatcctgtagcctt
tgcctcaaacatagcccatccctctgcttagcctcctgagttatggatta
catcatctgtttgtggtaggcctggttaaaaaaaaaaagtctagagattg
gggtattttttggttttggttttggtttttgtcagttttttgtttgtttg
tttgtttgtttgtttttcttttaagacaaagtctcaacatgtaaatatgg
ctgccttggaactcaagaactatgtagaccaggttggcctcaaactcaca
gagatcttcctatctctgcctacccagcactgggattaaaggtgtgcact
accactgtgcttagccaatctagagaatttttgatgatgcaaatatctag
ttatttgaagaaagtctagtttgcactgccaaattgcatatctatcatct
aatgtctatgatggatgcatgaaaaaataaaatactttcagagtcataat
gaactcactcattctacacaattctgtaatccctttcattctttaagtta
atcaaaaagtttctttgacacaaaagatctcacaaatctgtaccttttct
tgtgttattctctggcatattgaaaactatgcactccaatcgtggtagac
tagttttttttttttttaaaagcctgaagttacatttgtaaaatggtacc
atttcatgacaataataatagaatgatattttgtcttactattaaaccat
agtacatattgcaatgtcacataattaggacccatatacaaagagcttct
tccaggctggagtatggtaggggtgctcacaaaaacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34260746_34261926
seq2: B6Ng01-074D08.b_44_1225

seq1  GAATTCAGAAAGAGCTAGAAAGGGTAAGCTGATTCAGCAACAAGCCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGAGCTAGAAAGGGTAAGCTGATTCAGCAACAAGCCTCTG  50

seq1  AGATGACAATAACATCTGGTGAATAAAAGTTACTTTTACATAATTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACAATAACATCTGGTGAATAAAAGTTACTTTTACATAATTTCAGC  100

seq1  TCATCAATTTTTTCATTGTTGTAGCCTTTAACGATCCTTTATTCTCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAATTTTTTCATTGTTGTAGCCTTTAACGATCCTTTATTCTCCAAC  150

seq1  TGTATTCTCCTGAATACAGTAAATCTCTTTAGTATTTCCTTGAATAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTCCTGAATACAGTAAATCTCTTTAGTATTTCCTTGAATAAATA  200

seq1  TACAATTTGATAAGGCATTGAATAAGTTTTTCATTTTGTACTTGATAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTTGATAAGGCATTGAATAAGTTTTTCATTTTGTACTTGATAGAA  250

seq1  ACCTTTAAATATTACTAAAAGCCTCAGTTGCTTAATATCACACTATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAAATATTACTAAAAGCCTCAGTTGCTTAATATCACACTATTCTG  300

seq1  TATGAATACCACAATAATTTATTTCTAAAGTCCACTTAATAATTTTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATACCACAATAATTTATTTCTAAAGTCCACTTAATAATTTTATAC  350

seq1  TGCTCATTTTTGTAATGTTATTTTAATATGAACAATTTAATAAAAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTTTGTAATGTTATTTTAATATGAACAATTTAATAAAAATTAA  400

seq1  TAACCATATGCATATCTAGTATAATCATCTTTAAAATTCTATCTAGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATATGCATATCTAGTATAATCATCTTTAAAATTCTATCTAGATAT  450

seq1  AAAATCAAAAGTCAAAAAAATAAGTATAAGATATATCCAGCGCTACTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAAAAGTCAAAAAAATAAGTATAAGATATATCCAGCGCTACTTAA  500

seq1  ATATAACTGTATATTTTAAAAGCCATTCTATGTTAATTTAATTATATCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTGTATATTTTAAAAGCCATTCTATGTTAATTTAATTATATCCT  550

seq1  AATTTCAAATTTTGATATATCCAGGGTGCAGTGATAAAATTCAACATCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAAATTTTGATATATCCAGGGTGCAGTGATAAAATTCAACATCTA  600

seq1  CTCTTTAAGACTGTTAAGAAATTAAGTATGCAGAGCTAGGAGTATGGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAGACTGTTAAGAAATTAAGTATGCAGAGCTAGGAGTATGGCTC  650

seq1  AATGTGTGTTTCCTGTATAAACATGAAGACCTAAGTTGGATCAGTAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGTTTCCTGTATAAACATGAAGACCTAAGTTGGATCAGTAGTAC  700

seq1  TCATGTAATAAGAGCCAAGAATGGCTGTGTGTATCTGTAACTCATATGCC  750
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCATGTAATAAGAGCTAAGAATGGCTGTGTGTATCTGTAACTCATATGCC  750

seq1  CTGGGGATTGGTGACAGGATTGTGAGATCTTGCTAAATAGTCTAAATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATTGGTGACAGGATTGTGAGATCTTGCTAAATAGTCTAAATGAA  800

seq1  AACCAGCAATCATCGCAAGGTTCGTTGAGAGACTTTAACTAAAAAGGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCAATCATCGCAAGGTTCGTTGAGAGACTTTAACTAAAAAGGGTT  850

seq1  AGAGTTGGGTATCAGATACCCTTCTCTGACCTCTGTAAGCATACACAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGGGTATCAGATACCCTTCTCTGACCTCTGTAAGCATACACAAAT  900

seq1  ACATGCACATCCATGTGACTGTAAACACACACACACACACACACACACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCACATCCATGTGACTGTAAACACACACACACACACACACACACAC  950

seq1  ACACACACACAGGAGTCAGACAGTCAGACATTAAAATAGTTTTAAAGAGA  1000
      |||||||||||||||||||||||||||||||| |||||||||||||||| 
seq2  ACACACACACAGGAGTCAGACAGTCAGACATT-AAATAGTTTTAAAGAG-  998

seq1  AATTTCAGCAG-ATATTGCTCATCCCAGTGGTAAGCTTATTTAGAAACAT  1049
      ||||||||||| ||||||||||||||||| || ||||||||  |||||||
seq2  AATTTCAGCAGAATATTGCTCATCCCAGT-GTTAGCTTATTAGGAAACAT  1047

seq1  CTTAGATAACAGACAGGTTGTTGGGACGATGTGGTCATGCTAGTTATTAC  1099
      | ||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  C-TAGATAACAGACAAGGTGTTGGGACGATGTGGTCATGCTAGTTATTAC  1096

seq1  TTTAAACTTTTTGATGAAAGAAG-AAAAAGCTTGACCTGGTGTA-TTTAT  1147
      |||||  |||||||||||||||| ||||||||||||||||| || |||||
seq2  TTTAACTTTTTTGATGAAAGAAGAAAAAAGCTTGACCTGGTTTATTTTAT  1146

seq1  AAATCT--CTGATTA-TCATCAAAAGACAAAAGTATT  1181
      |||| |   ||| || |||||||| ||| ||||||||
seq2  AAATTTTCTTGAATATTCATCAAAGGAC-AAAGTATT  1182

seq1: chr12_34374731_34375713
seq2: B6Ng01-074D08.g_69_1057 (reverse)

seq1  CACGTTTCTGTGAGCACCCCTACCATACTCCAGCCT-GAAGAAGCTCTTT  49
      || |||| |||||||||||||||||||||||||||| |||||||||||||
seq2  CAGGTTTTTGTGAGCACCCCTACCATACTCCAGCCTGGAAGAAGCTCTTT  50

seq1  TGTTTTGGTTCCT-ATTATCTGACATTGCAATATGTACTAT-GATTAATA  97
         | ||| |||| ||||| ||||||||||||||||||||| | ||||||
seq2  GTATATGGGTCCTAATTATGTGACATTGCAATATGTACTATGGTTTAATA  100

seq1  GTAAGACAAAATATCATTCTATTATTATTGTCATGGAATGGTACCATTTT  147
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTAAGACAAAATATCATTCTATTATTATTGTCATGAAATGGTACCATTTT  150

seq1  AC-AATGTAACTTCAGGCTATTAAAAAAAAAAAAAACTAGTCTACCACGA  196
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ACAAATGTAACTTCAGGCTTTTAAAAAAAAAAAAAACTAGTCTACCACGA  200

seq1  TTGGAGTGCATAGTTTTCAATATGCCAGAGAATAACACAAGAAAAGGTAC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTGCATAGTTTTCAATATGCCAGAGAATAACACAAGAAAAGGTAC  250

seq1  AGATTTGTGAGATCTTTTGTGTCAAAGAAAC-TTTTGA-TAACTTAAAGA  294
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  AGATTTGTGAGATCTTTTGTGTCAAAGAAACTTTTTGATTAACTTAAAGA  300

seq1  ATGAAAGGGATTACAGAATTGTGTAGAATGAGTGAGTTCATTATGACTCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGGATTACAGAATTGTGTAGAATGAGTGAGTTCATTATGACTCT  350

seq1  GAAAGTATTTTATTTTTTCATGCATCCATCATAGACATTAGATGATAGAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTATTTTATTTTTTCATGCATCCATCATAGACATTAGATGATAGAT  400

seq1  ATGCAATTTGGCAGTGCAAACTAGACTTTCTTCAAATAACTAGATATTTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATTTGGCAGTGCAAACTAGACTTTCTTCAAATAACTAGATATTTG  450

seq1  CATCATCAAAAATTCTCTAGATTGGCTAAGCACAGTGGTAGTGCACACCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCAAAAATTCTCTAGATTGGCTAAGCACAGTGGTAGTGCACACCT  500

seq1  TTAATCCCAGTGCTGGGTAGGCAGAGATAGGAAGATCTCTGTGAGTTTGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCCAGTGCTGGGTAGGCAGAGATAGGAAGATCTCTGTGAGTTTGA  550

seq1  GGCCAACCTGGTCTACATAGTTCTTGAGTTCCAAGGCAGCCATATTTACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAACCTGGTCTACATAGTTCTTGAGTTCCAAGGCAGCCATATTTACA  600

seq1  TGTTGAGACTTTGTCTTAAAAGAAAAACAAACAAACAAACAAACAAACAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGACTTTGTCTTAAAAGAAAAACAAACAAACAAACAAACAAACAA  650

seq1  AAAACTGACAAAAACCAAAACCAAAACCAAAAAATACCCCAATCTCTAGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGACAAAAACCAAAACCAAAACCAAAAAATACCCCAATCTCTAGA  700

seq1  CTTTTTTTTTTTAACCAGGCCTACCACAAACAGATGATGTAATCCATAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTAACCAGGCCTACCACAAACAGATGATGTAATCCATAAC  750

seq1  TCAGGAGGCTAAGCAGAGGGATGGGCTATGTTTGAGGCAAAGGCTACAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGGCTAAGCAGAGGGATGGGCTATGTTTGAGGCAAAGGCTACAGG  800

seq1  ATATGACACCAATTCCAAAAGTGCATCCTCTGGGGTCTGAAGAGATGGTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACACCAATTCCAAAAGTGCATCCTCTGGGGTCTGAAGAGATGGTT  850

seq1  TAACAATTAATAACACTGCTACTCTCCAGATGACCCATGTTTAATTTCCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAATTAATAACACTGCTACTCTCCAGATGACCCATGTTTAATTTCCA  900

seq1  GCACCAACATCATGTAGCTTACAAATGCCTGTAACCCCAATTTCAGGGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAACATCATGTAGCTTACAAATGCCTGTAACCCCAATTTCAGGGTA  950

seq1  TCTTGTGCTTTCTTTTGCCTTCCAAGGGCAGTTGAATTC  983
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTGCTTTCTTTTGCCTTCCAAGGGCAGTTGAATTC  989