BAC Information

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BAC

Clone NameB6Ng01-074D11
Chromosome12 (Build37)
Map Location 62,958,100 - 63,113,498
singlet/doubletdoublet
Overlap geneLOC665707
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
Downstream geneLOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074D11.bB6Ng01-074D11.g
ACCDH891129DH891130
length1,1081,091
definitionDH891129|Mus musculus domesticus DNA, BAC clone: B6Ng01-074D11, 5' end.DH891130|Mus musculus domesticus DNA, BAC clone: B6Ng01-074D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,958,100 - 62,959,235)(63,112,414 - 63,113,498)
sequence
gaattctgatagaaaatgcccattttttctaaaaagcaacagaggcatat
attgtaacaaatgccatggatcaatgaatacaaagaattttacctagagg
gtgttgggaaaaatgaaataagagcaaattatggcctacaatttaggtgt
gactcaaataaatatgagggctttatgatcctagttttgctttgggaatg
gatggttattattacacatttgctaactttgaaatgctcagatagtatct
tcctaatggttatgggtgtctacatttgtcctttacatttttgccaggag
gaagtcatcttcctgagttttttagctcagcagctttagaatttcaacac
tattatcttactgatttgtgttttcttcttcttctttttttttttttttg
ttttcctttctatgattgcagaggctggagtccatatgaagagcaacact
tctctctctctcctgagaacagttgcccctaatatttttactggataaaa
tttgaaaatgtttcagttcacagctgtggattgttgaactgcttgtccca
gaacgaattgctcatgggagccaaagctacaaggtctctgatgtggtgaa
actggctccctcccaacatggttcatccccttttaaaaccaaattttttt
cttctgatctacaaatattttttttaataaaggaaaaagaacaagccttc
attggcatcaagttctgtatcaaatccatcctacattgccatccatgatt
taacagactgtagaatcttgaataatctatatcactttaacaaataaatg
ttttactatgacacaatttgcacattgccttattttgggactaccttttg
cttcaagcctaaatggtggtgtggattatttttacataaattatatgttt
tataaccaagttcttttatacctatgaaataaaatcttaggattccaaat
tgctcatatagataaacttcgttaggtgtgctatgtctacaggagggaac
actattgactcattatagcagctgcattatccgggtaagatgccaaatgt
tcatctctatctctatggaccatcagaaaggacagtttgccaaagattag
atcggctt
gaattccacacgcctaagtccctcaccccatacaaacccctagctttcga
gcctcgtggcggacatccattatctcctgtgtgagatgcatgttggtcca
gaggtccgtcattaaatgaccttatgtaattacagcaagataggtccttg
tgtttctttgggtactctctcactcccgagactagagtggtggtccccga
aagggggtcttacaataatagtccttccaatagtcatgagttattttaag
ttaaaatatttgtcgaagtgtgtctcaggattttccctgtccaattacat
tagtgcagaggaggtctgttattggacagggaaaatgggggtggagctaa
gagtttcagagagaaggagcatctcatagaagaaccagggccgtggatgt
gaacccttgtgttaccttccttattcattaagcctattttcttaacctat
gtgatgattacatagatctgaactgcaacttacttatattgatgaattat
taaaaaaagtttatgtaatcatgtttatgataatcacctgaattcttaaa
aataggaataataataaaaaatcagttctacatgttgtactacaaatgct
tctatgcagtgtttctccacagaagatgtgtacttcttcctctccaaggt
cagttgatcatcactgaaatttaccactatattacgcataaaataataac
tgatgcaatctgcatttagtacaaaataattcttctttagtgctgtggat
tatttgggtttgtcttgaagacaaagaatgagaagcacagaagaaaatta
aatggatatcttacatttaagaagtgaaattaaaatgtatacttcatcat
agactttagattccagggccagagtggtatgatattacagtattggtgag
ataagagtattacaaaggctcaagatttatactcaagtacatgcttagaa
tttgtttctgtttgtggaggttttagtgaaaatttcccctgtgggaatct
aatactatcatgcttggtctccagatgataaactgcagttgaataaacta
ttgcagttatggaagtatgaaatttatttgcagcgaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_62958100_62959235
seq2: B6Ng01-074D11.b_44_1151

seq1  GAATTCTGATAGAAAATGCCCATTTTTTCTAAAAAGCAACAGAGGCATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATAGAAAATGCCCATTTTTTCTAAAAAGCAACAGAGGCATAT  50

seq1  ATTGTAACAAATGCCATGGATCAATGAATACAAAGAATTTTACCTAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAACAAATGCCATGGATCAATGAATACAAAGAATTTTACCTAGAGG  100

seq1  GTGTTGGGAAAAATGAAATAAGAGCAAATTATGGCCTACAATTTAGGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGGAAAAATGAAATAAGAGCAAATTATGGCCTACAATTTAGGTGT  150

seq1  GACTCAAATAAATATGAGGGCTTTATGATCCTAGTTTTGCTTTGGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAAATAAATATGAGGGCTTTATGATCCTAGTTTTGCTTTGGGAATG  200

seq1  GATGGTTATTATTACACATTTGCTAACTTTGAAATGCTCAGATAGTATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTATTATTACACATTTGCTAACTTTGAAATGCTCAGATAGTATCT  250

seq1  TCCTAATGGTTATGGGTGTCTACATTTGTCCTTTACATTTTTGCCAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGGTTATGGGTGTCTACATTTGTCCTTTACATTTTTGCCAGGAG  300

seq1  GAAGTCATCTTCCTGAGTTTTTTAGCTCAGCAGCTTTAGAATTTCAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATCTTCCTGAGTTTTTTAGCTCAGCAGCTTTAGAATTTCAACAC  350

seq1  TATTATCTTACTGATTTGTGTTTTCTTCTTCTTCTTTTTTTTTTTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCTTACTGATTTGTGTTTTCTTCTTCTTCTTTTTTTTTTTTTTTG  400

seq1  TTTTCCTTTCTATGATTGCAGAGGCTGGAGTCCATATGAAGAGCAACACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTTCTATGATTGCAGAGGCTGGAGTCCATATGAAGAGCAACACT  450

seq1  TCTCTCTCTCTCCTGAGAACAGTTGCCCCTAATATTTTTACTGGATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCCTGAGAACAGTTGCCCCTAATATTTTTACTGGATAAAA  500

seq1  TTTGAAAATGTTTCAGTTCACAGCTGTGGATTGTTGAACTGCTTGTCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATGTTTCAGTTCACAGCTGTGGATTGTTGAACTGCTTGTCCCA  550

seq1  GAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAA  600

seq1  ACTGGCTCCCTCCCAACATGGTTCATCCCCTTTTAAAACCAAATTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTCCCTCCCAACATGGTTCATCCCCTTTTAAAACCAAATTTTTTT  650

seq1  CTTCTGATCTACAAATATTTTTTTTAATAAAGGAAAAAGAACAAGCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGATCTACAAATATTTTTTTTAATAAAGGAAAAAGAACAAGCCTTC  700

seq1  ATTGGCATCAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCATCAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATT  750

seq1  TAACAGACTGTAGAATCTTGAATAATCTATATCACTTTAACAAATAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGACTGTAGAATCTTGAATAATCTATATCACTTTAACAAATAAATG  800

seq1  TTTTACTATGACACAATTTGCACATTGCCTTATTTTGGGACTACCTTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTATGACACAATTTGCACATTGCCTTATTTTGGGACTACCTTTTG  850

seq1  CTTCAAGCCTAAATGGTGGTGTGGATTATTTTTACATAAAATTATATGTT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTTCAAGCCTAAATGGTGGTGTGGATTATTTTTACAT-AAATTATATGTT  899

seq1  TTAATAACCAAGTTCTTTTATACCTATGAAATAAAAATCTTTAGGAATTC  950
      || ||||||||||||||||||||||||||||| |||||| ||||| ||||
seq2  TT-ATAACCAAGTTCTTTTATACCTATGAAAT-AAAATC-TTAGG-ATTC  945

seq1  CAAATTGCTCAATAATAGAATAAACTTTTCGTTAGGGTTGTGCCTATGTC  1000
      |||||||||||   |||| ||||||  |||||||||  |||| |||||||
seq2  CAAATTGCTCA--TATAG-ATAAAC--TTCGTTAGG--TGTG-CTATGTC  987

seq1  TACAGGAGGGGAAAACAACTATTTGAACTCATTTATAGCAGCTGCATTAT  1050
      ||||||||||   ||| ||||||   ||||| ||||||||||||||||| 
seq2  TACAGGAGGG---AAC-ACTATT--GACTCA-TTATAGCAGCTGCATTA-  1029

seq1  TCCGTGTAAGATGCAAAGTGTTCAGTCCTCTATCTCCTAATGGACCATCA  1100
      |||| ||||||||| || ||||||   |||||||||   |||||||||||
seq2  TCCGGGTAAGATGCCAAATGTTCA--TCTCTATCTC--TATGGACCATCA  1075

seq1  GAAAAGGAGCAGTTTGGCAAAAGTATAGATCGGCTT  1136
      | |||||| |||||| || ||||  |||||||||||
seq2  G-AAAGGA-CAGTTT-GCCAAAGATTAGATCGGCTT  1108

seq1: chr12_63112414_63113498
seq2: B6Ng01-074D11.g_67_1157 (reverse)

seq1  ATATTT-ACTGC-AATAAA-TTCATACTTCCATTACTGCAATAGTTTA-T  46
      ||||||  |||| |||||| ||||||||||||| |||||||||||||| |
seq2  ATATTTCGCTGCAAATAAATTTCATACTTCCATAACTGCAATAGTTTATT  50

seq1  CAACTGCAGTTTATCATCTGGAGACCAAGCATGATAGTATAAGATT-CCA  95
      |||||||||||||||||||||||||||||||||||||||| ||||| |||
seq2  CAACTGCAGTTTATCATCTGGAGACCAAGCATGATAGTATTAGATTCCCA  100

seq1  CAGGGGAAATTTTCACTAAAACCTCCACAAACAGAAACAAATTCTAAGCA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGAAATTTTCACTAAAACCTCCACAAACAGAAACAAATTCTAAGCA  150

seq1  TGTACTTGAGTATAAATCTTGAGCCTTTGTAATACTCTTATCTCACCAAT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGAGTATAAATCTTGAGCCTTTGTAATACTCTTATCTCACCAAT  200

seq1  ACTGTAATATCATACCACTCTGGCCCTGGAATCT-AAGTCTATGATGAAG  244
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACTGTAATATCATACCACTCTGGCCCTGGAATCTAAAGTCTATGATGAAG  250

seq1  TATACATTTTAATTTCACTTCTTAAATGTAAGATATCCATTTAATTTTCT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATTTTAATTTCACTTCTTAAATGTAAGATATCCATTTAATTTTCT  300

seq1  TCTGTGCTTCTCATTCTTTGTCTTCAAGACAAACCCAAATAATCCACAGC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCTTCTCATTCTTTGTCTTCAAGACAAACCCAAATAATCCACAGC  350

seq1  ACTAAAGAAGAATTATTTTGTACTAAATGCAGATTGCATCAGTTATTATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAAGAATTATTTTGTACTAAATGCAGATTGCATCAGTTATTATT  400

seq1  TTATGCGTAATATAGTGGTAAATTTCAGTGATGATCAACTGACCTTGGAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCGTAATATAGTGGTAAATTTCAGTGATGATCAACTGACCTTGGAG  450

seq1  AGGAAGAAGTACACATCTTCTGTGGAGAAACACTGCATAGAAGCATTTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAAGTACACATCTTCTGTGGAGAAACACTGCATAGAAGCATTTGT  500

seq1  AGTACAACATGTAGAACTGATTTTTTATTATTATTCCTATTTTTAAGAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAACATGTAGAACTGATTTTTTATTATTATTCCTATTTTTAAGAAT  550

seq1  TCAGGTGATTATCATAAACATGATTACATAAACTTTTTTTAATAATTCAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGATTATCATAAACATGATTACATAAACTTTTTTTAATAATTCAT  600

seq1  CAATATAAGTAAGTTGCAGTTCAGATCTATGTAATCATCACATAGGTTAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATAAGTAAGTTGCAGTTCAGATCTATGTAATCATCACATAGGTTAA  650

seq1  GAAAATAGGCTTAATGAATAAGGAAGGTAACACAAGGGTTCACATCCACG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGGCTTAATGAATAAGGAAGGTAACACAAGGGTTCACATCCACG  700

seq1  GCCCTGGTTCTTCTATGAGATGCTCCTTCTCTCTGAAACTCTTAGCTCCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGTTCTTCTATGAGATGCTCCTTCTCTCTGAAACTCTTAGCTCCA  750

seq1  CCCCCATTTTCCCTGTCCAATAACAGACCTCCTCTGCACTAATGTAATTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATTTTCCCTGTCCAATAACAGACCTCCTCTGCACTAATGTAATTG  800

seq1  GACAGGGAAAATCCTGAGACACACTTCGACAAATATTTTAACTTAAAATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGAAAATCCTGAGACACACTTCGACAAATATTTTAACTTAAAATA  850

seq1  ACTCATGACTATTGGAAGGACTATTATTGTAAGACCCCCTTTCGGGGACC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGACTATTGGAAGGACTATTATTGTAAGACCCCCTTTCGGGGACC  900

seq1  ACCACTCTAGTCTCGGGAGTGAGAGAGTACCCAAAGAAACACAAGGACCT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTCTAGTCTCGGGAGTGAGAGAGTACCCAAAGAAACACAAGGACCT  950

seq1  ATCTTGCTGTAATTACATAAGGTCATTTAATGACGGACCTCTGGACCAAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGCTGTAATTACATAAGGTCATTTAATGACGGACCTCTGGACCAAC  1000

seq1  ATGCATCTCACACAGGAGATAATGGATGTCCGCCACGAGGCTCGAAAGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTCACACAGGAGATAATGGATGTCCGCCACGAGGCTCGAAAGCT  1050

seq1  AGGGGTTTGTATGGGGTGAGGGACTTAGGCGTGTGGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTTGTATGGGGTGAGGGACTTAGGCGTGTGGAATTC  1091