BAC Information

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BAC

Clone NameB6Ng01-074L21
Chromosome12 (Build37)
Map Location 112,523,962 - 112,652,389
singlet/doubletdoublet
Overlap geneCdc42bpb, A230065H16Rik
Upstream geneEG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn
Downstream gene1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074L21.bB6Ng01-074L21.g
ACCDH891502DH891503
length1,160366
definitionDH891502|Mus musculus domesticus DNA, BAC clone: B6Ng01-074L21, 5' end.DH891503|Mus musculus domesticus DNA, BAC clone: B6Ng01-074L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,651,206 - 112,652,389)(112,523,962 - 112,524,333)
sequence
gaattccattcctgctttcatctcccaagtgttggggttgcagtaagtgc
cattacacccagccagcaacttgttcgatttttccatgttgccttcccct
ggctttttcagtaaaatcccagcggaaaagtcccagcatagtctaagaga
agcccaggcgccagggcagtcaaattgagatcagctgagggccgtgcagg
ggccagctaagaggagaggcatagctagaacaccatagacaccgagaacg
tcaaccccagctccccacgaccttgggagaggcatctttgtctctaagcc
ttatttactcttaagtaaacaggattgttactgggatgatgtgagttcac
ctcacctgaggacctggcttctaggtaggcaagagcagaaggaccctcca
cagatgtttacctgtctaggggtcaattttgcccagaatgctaaggggcc
cagattggaatccattctaagactggggaggcggagtttaccctgtgtcc
ctggcggctgcgggggtctggcgggagcggggttgtggggcccgaggtgt
gtgtggattgtgccctactctctctgaggccaatttgcagcctgctggtg
gacctaaacgcaccagacggtggcgtctgctgtttttaagcactgacccc
ggcggacgctagggggagccgcaggcagatttcaggtctcctgtgtgcta
aggagaggctgggctaggctggactgctgagtgggtgtggcgtccgctct
ggcctcacccgggctctctcccactgcttagggagaagtgggcagaggtc
cgaccctctacgccccctctagctctcggacctccggaatgggttatcac
tacactggggctaccctggtaaaccacggagaaagcctgggcttgggtcc
caggagacacccccgcccctctccaaggccctggacttgccttctgtgga
ccctgttaattgggcataatcctgcccagagagagtgtgcaacatcgctc
ctcgtcccggtctgctctgctttcgagtgacagcactcctgcaagtcagc
cccctgagatccccacactccctcccaattctagtctcactgaacattca
aatccacagagcctgggaacagaagtcttaggaaacaacacttctaacct
gtgaaaccct
ccaagggcccagggccaggaagctgctgtcagtaacaccgggaggcaaag
gacgctctgcctgccagggtgggcagctagaggcccggccccgctgggtc
tggatagcagctctttctgcccgctatccaagctcggctttctctaattg
aggaggaatcttcattccctctgcgctgcctgcttggggtgctggcccac
acccactcctgtttctggtttccagttgctgtggtgtgtccaggctaagg
aaaaagcactcagaattctctcgattatgggtctgtgcactgaattattt
actaagtgcttatggagctcacagatcacagacttgaaaggggggtgtga
agggggtgaagggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112651206_112652389
seq2: B6Ng01-074L21.b_48_1207 (reverse)

seq1  AGGG-TTCACGGGTTAGAAGTGTTGTTGTCCTAGAACCTCCCTGTCCCCA  49
      |||| ||||| |||||||||||||||| |||||  || |  |||| ||||
seq2  AGGGTTTCACAGGTTAGAAGTGTTGTT-TCCTAAGACTT--CTGTTCCCA  47

seq1  GCCCTCCTTGTGGGTTTTGAGAAAGGTCAGTGAGACTAGGAAATGGGGAG  99
      |  |||  ||||| |||   ||| | |||||||||||||  ||| |||||
seq2  G-GCTC--TGTGGATTT---GAATGTTCAGTGAGACTAG--AATTGGGAG  89

seq1  GGAGTGTGGGGATCCTCAGGGGGCTGACCTTTGGCAGGAAGTGCTGTCCA  149
      ||||||||||||| ||||||||||||||   | ||||| |||||||| ||
seq2  GGAGTGTGGGGAT-CTCAGGGGGCTGAC---TTGCAGG-AGTGCTGT-CA  133

seq1  CTCCGAGAGGCAGAGCAGACCGGGACGAGGAGCGATGTTGCACCACCTCT  199
      || ||| | ||||||||||||||||||||||||||||||||||   ||||
seq2  CT-CGA-AAGCAGAGCAGACCGGGACGAGGAGCGATGTTGCACACTCTCT  181

seq1  CTCCCGGGCAGGATTATGCCCAATTAAACAGGGTCCCACAGAAGGCAAGT  249
      ||   |||||||||||||||||||| |||||||| |||||||||||||||
seq2  CT---GGGCAGGATTATGCCCAATT-AACAGGGT-CCACAGAAGGCAAGT  226

seq1  CCAGGGCCCTTGGAGAGGGGCGGGGGTGTCTCCTGGGACCCAAGCCCAGG  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGG-CCTTGGAGAGGGGCGGGGGTGTCTCCTGGGACCCAAGCCCAGG  275

seq1  CTTTCTCCGTGGTTTACCAGGGTAGCCCCAGTGTAGTGATAACCCATTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCCGTGGTTTACCAGGGTAGCCCCAGTGTAGTGATAACCCATTCC  325

seq1  GGAGGTCCGAGAGCTAGAGGGGGCGTAGAGGGTCGGACCTCTGCCCACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCCGAGAGCTAGAGGGGGCGTAGAGGGTCGGACCTCTGCCCACTT  375

seq1  CTCCCTAAGCAGTGGGAGAGAGCCCGGGTGAGGCCAGAGCGGACGCCACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAAGCAGTGGGAGAGAGCCCGGGTGAGGCCAGAGCGGACGCCACA  425

seq1  CCCACTCAGCAGTCCAGCCTAGCCCAGCCTCTCCTTAGCACACAGGAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCAGCAGTCCAGCCTAGCCCAGCCTCTCCTTAGCACACAGGAGAC  475

seq1  CTGAAATCTGCCTGCGGCTCCCCCTAGCGTCCGCCGGGGTCAGTGCTTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCTGCCTGCGGCTCCCCCTAGCGTCCGCCGGGGTCAGTGCTTAA  525

seq1  AAACAGCAGACGCCACCGTCTGGTGCGTTTAGGTCCACCAGCAGGCTGCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCAGACGCCACCGTCTGGTGCGTTTAGGTCCACCAGCAGGCTGCA  575

seq1  AATTGGCCTCAGAGAGAGTAGGGCACAATCCACACACACCTCGGGCCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCCTCAGAGAGAGTAGGGCACAATCCACACACACCTCGGGCCCCA  625

seq1  CAACCCCGCTCCCGCCAGACCCCCGCAGCCGCCAGGGACACAGGGTAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCGCTCCCGCCAGACCCCCGCAGCCGCCAGGGACACAGGGTAAAC  675

seq1  TCCGCCTCCCCAGTCTTAGAATGGATTCCAATCTGGGCCCCTTAGCATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCCTCCCCAGTCTTAGAATGGATTCCAATCTGGGCCCCTTAGCATTC  725

seq1  TGGGCAAAATTGACCCCTAGACAGGTAAACATCTGTGGAGGGTCCTTCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAAAATTGACCCCTAGACAGGTAAACATCTGTGGAGGGTCCTTCTG  775

seq1  CTCTTGCCTACCTAGAAGCCAGGTCCTCAGGTGAGGTGAACTCACATCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCCTACCTAGAAGCCAGGTCCTCAGGTGAGGTGAACTCACATCAT  825

seq1  CCCAGTAACAATCCTGTTTACTTAAGAGTAAATAAGGCTTAGAGACAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAACAATCCTGTTTACTTAAGAGTAAATAAGGCTTAGAGACAAAG  875

seq1  ATGCCTCTCCCAAGGTCGTGGGGAGCTGGGGTTGACGTTCTCGGTGTCTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCTCCCAAGGTCGTGGGGAGCTGGGGTTGACGTTCTCGGTGTCTA  925

seq1  TGGTGTTCTAGCTATGCCTCTCCTCTTAGCTGGCCCCTGCACGGCCCTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTCTAGCTATGCCTCTCCTCTTAGCTGGCCCCTGCACGGCCCTCA  975

seq1  GCTGATCTCAATTTGACTGCCCTGGCGCCTGGGCTTCTCTTAGACTATGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCTCAATTTGACTGCCCTGGCGCCTGGGCTTCTCTTAGACTATGC  1025

seq1  TGGGACTTTTCCGCTGGGATTTTACTGAAAAAGCCAGGGGAAGGCAACAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTTTCCGCTGGGATTTTACTGAAAAAGCCAGGGGAAGGCAACAT  1075

seq1  GGAAAAATCGAACAAGTTGCTGGCTGGGTGTAATGGCACTTACTGCAACC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATCGAACAAGTTGCTGGCTGGGTGTAATGGCACTTACTGCAACC  1125

seq1  CCAACACTTGGGAGATGAAAGCAGGAATGGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  CCAACACTTGGGAGATGAAAGCAGGAATGGAATTC  1160

seq1: chr12_112523962_112524333
seq2: B6Ng01-074L21.g_69_440

seq1  GAATTCCCAAGGGCCCAGGGCCAGGAAGCTGCTGTCAGTAACACCGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAAGGGCCCAGGGCCAGGAAGCTGCTGTCAGTAACACCGGGAG  50

seq1  GCAAAGGACGCTCTGCCTGCCAGGGTGGGCAGCTAGAGGCCCGGCCCCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGACGCTCTGCCTGCCAGGGTGGGCAGCTAGAGGCCCGGCCCCGC  100

seq1  TGGGTCTGGATAGCAGCTCTTTCTGCCCGCTATCCAAGCTCGGCTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGGATAGCAGCTCTTTCTGCCCGCTATCCAAGCTCGGCTTTCTC  150

seq1  TAATTGAGGAGGAATCTTCATTCCCTCTGCGCTGCCTGCTTGGGGTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGAGGAGGAATCTTCATTCCCTCTGCGCTGCCTGCTTGGGGTGCTG  200

seq1  GCCCACACCCACTCCTGTTTCTGGTTTCCAGTTGCTGTGGTGTGTCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACCCACTCCTGTTTCTGGTTTCCAGTTGCTGTGGTGTGTCCAGG  250

seq1  CTAAGGAAAAAGCACTCAGAATTCTCTCGATTATGGGTCTGTGCACTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAAAAGCACTCAGAATTCTCTCGATTATGGGTCTGTGCACTGAA  300

seq1  TTATTTACTAAGTGCTTATGGAGCTCACAGATCACAGACTTGAAAGGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTAAGTGCTTATGGAGCTCACAGATCACAGACTTGAAAGGGGG  350

seq1  GTGTGAAGGGGGTGAAGGGGGT  372
      ||||||||||||||||||||||
seq2  GTGTGAAGGGGGTGAAGGGGGT  372