BAC Information

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BAC

Clone NameB6Ng01-075F03
Chromosome12 (Build37)
Map Location 49,576,964 - 49,694,361
singlet/doubletdoublet
Overlap geneGm1818
Upstream geneEG664891
Downstream geneGA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075F03.bB6Ng01-075F03.g
ACCDH891911DH891912
length1,1731,186
definitionDH891911|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F03, 5' end.DH891912|Mus musculus domesticus DNA, BAC clone: B6Ng01-075F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,576,964 - 49,578,144)(49,693,164 - 49,694,361)
sequence
gaattcttcaacttccactctctctcctatttagagatggcattggtgca
cttcaaagggaaactgattccagaatgggcatggaaagctcacagccttc
tgtacttgctaagccaaccacttctgctctcattcactcctttttctgtg
atcacacctgggctgcaccttcacattaacacatatttaaaactctcaat
tcaagagtaattcaaaatttcctttaaccaaaccaacatgttttatcttg
tagttttttcttgattaatagcaaaatgtatttcaaagatgcatttacca
caaatttccatttggctaatttacttacattcttacacaaattacaatat
agatacaacaccactatatgttagcaaccttctttttcagtaccttaata
attcccaggtgtagaaactttcaatggttttgttacacctgattagcctt
gagcatgctaacaatacatttatgttccactaaatttctgtaagtaccta
ttgttctgatattcttttatctgactagtgttctctgtgctttctgttag
atgaccttctaatcaattattcatagtagattattttataatttgagtga
ttttaaatgctacatatcgaatcggggctgggcataatgtttgccttaca
gacatgaatccccgagtttgaccctagcaccacatacactgagtgttgta
gtggatattggtgatctgaactcaggatgtaggtacaggaggaacagaag
tttatgctcatgcttagctacatacaaaagctgaggctcagtctggagta
catgagagcctaactcaacaaaacaaagaaaaaggacaaaatatgacttg
aaaaaaatatatgggcaccttaagttagcatgttgttctttctgggattt
tcccttaaaactggcatcccaaactatgtgaggtatttaaatcagtggct
taaaatatcttttgcattccagttcctaaatctgtctaattttccttcca
gggaaatgactcttaattgtttcacccacttactcagaagattcactttc
tactcctaaaatactatctataattcgtatcctcagtggcatcagcacaa
cataccgaaatttttggagagaaaggacggaaaccacatgtcacaattcc
tttgtcaattttgataccaatca
gaattcagtggtttattgtggtctatgtttatctgaggccagaaactgat
tctgggaaacctggaacctggaatgcagtgctcttaactactgactcagt
tctcaagcttctatatggaaaatttttaaaaattaaaacaaccacactat
gttaacttgtgttttggaagtcatgctcatcatcataaacttcaagctga
gagatgccaggaaatttaaactcaatgtctctataaagaatgtgaaaaat
cctaaagaagacattataaaataaatgccaatgatatatagggacaataa
gtcatgtgaagctaatatttattttagaaaaaaaagattaataatactat
tttaaatgtcattgcactgcaataataatattaatagaaaaatggcgaaa
tgtctaaggaaaaaagaatttgagataattaatgtattcatagtgttcca
aattatgccaacaaaattttcgtagaagagaacgaaaacttattactttg
acaagattataataaagcaaaaatttaacaagaaactaatagcactgtgt
tttgttttgatatattaaaagcatttatcactggtgtcagaaggcaccaa
agattgctcaccatttttatacttttaaatattttattggaaataaagtg
aaagaactaaaatgtaaaacaaaaattccacatataagcatgcaagttta
ttttattttattttttccattatttaaaaataatacttggaaataagtag
aaacatcacacacagagaaattaatccaattcaaatactatgcaacttaa
tgaacttacatacagttaagaaaatgtattgtaaacagaatctctgaagc
ctcacattaaatttttttatgtatccaaatacattttatttcaaaattcc
ttactaataaagcacattaaaagaaaaataaaatttaaattgtttgaaaa
catgaggaaagaaattgcagtcaaagacgtttcattttcttatacagaaa
aataaaaagaggagacaggatgctgtcagatagtaagtctaataagctat
attgtaatgcttttgattaaagatgatggagccaatataatttttgtagc
tgcaataagaaattagagtaataatactattttctagagcaaatccctca
aattctttcgaatgaatctcaagagaagtcatgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_49576964_49578144
seq2: B6Ng01-075F03.b_44_1216

seq1  GAATTCTTCAACTTCCACTCTCTCTCCTATTTAGAGATGGCATTGGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAACTTCCACTCTCTCTCCTATTTAGAGATGGCATTGGTGCA  50

seq1  CTTCAAAGGGAAACTGATTCCAGAATGGGCATGGAAAGCTCACAGCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGGGAAACTGATTCCAGAATGGGCATGGAAAGCTCACAGCCTTC  100

seq1  TGTACTTGCTAAGCCAACCACTTCTGCTCTCATTCACTCCTTTTTCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTTGCTAAGCCAACCACTTCTGCTCTCATTCACTCCTTTTTCTGTG  150

seq1  ATCACACCTGGGCTGCACCTTCACATTAACACATATTTAAAACTCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACCTGGGCTGCACCTTCACATTAACACATATTTAAAACTCTCAAT  200

seq1  TCAAGAGTAATTCAAAATTTCCTTTAACCAAACCAACATGTTTTATCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGTAATTCAAAATTTCCTTTAACCAAACCAACATGTTTTATCTTG  250

seq1  TAGTTTTTTCTTGATTAATAGCAAAATGTATTTCAAAGATGCATTTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTTTCTTGATTAATAGCAAAATGTATTTCAAAGATGCATTTACCA  300

seq1  CAAATTTCCATTTGGCTAATTTACTTACATTCTTACACAAATTACAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCCATTTGGCTAATTTACTTACATTCTTACACAAATTACAATAT  350

seq1  AGATACAACACCACTATATGTTAGCAACCTTCTTTTTCAGTACCTTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACAACACCACTATATGTTAGCAACCTTCTTTTTCAGTACCTTAATA  400

seq1  ATTCCCAGGTGTAGAAACTTTCAATGGTTTTGTTACACCTGATTAGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAGGTGTAGAAACTTTCAATGGTTTTGTTACACCTGATTAGCCTT  450

seq1  GAGCATGCTAACAATACATTTATGTTCCACTAAATTTCTGTAAGTACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGCTAACAATACATTTATGTTCCACTAAATTTCTGTAAGTACCTA  500

seq1  TTGTTCTGATATTCTTTTATCTGACTAGTGTTCTCTGTGCTTTCTGTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGATATTCTTTTATCTGACTAGTGTTCTCTGTGCTTTCTGTTAG  550

seq1  ATGACCTTCTAATCAATTATTCATAGTAGATTATTTTATAATTTGAGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTCTAATCAATTATTCATAGTAGATTATTTTATAATTTGAGTGA  600

seq1  TTTTAAATGCTACATATCGAATCGGGGCTGGGCATAATGTTTGCCTTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATGCTACATATCGAATCGGGGCTGGGCATAATGTTTGCCTTACA  650

seq1  GACATGAATCCCCGAGTTTGACCCTAGCACCACATACACTGAGTGTTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGAATCCCCGAGTTTGACCCTAGCACCACATACACTGAGTGTTGTA  700

seq1  GTGGATATTGGTGATCTGAACTCAGGATGTAGGTACAGGAGGAACAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATATTGGTGATCTGAACTCAGGATGTAGGTACAGGAGGAACAGAAG  750

seq1  TTTATGCTCATGCTTAGCTACATACAAAAGCTGAGGCTCAGTCTGGAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGCTCATGCTTAGCTACATACAAAAGCTGAGGCTCAGTCTGGAGTA  800

seq1  CATGAGAGCCTAACTCAACAAAACAAAGAAAAAGGACAAAATATGACTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGCCTAACTCAACAAAACAAAGAAAAAGGACAAAATATGACTTG  850

seq1  AAAAAAATATATGGGCACCTTAAGTTAGCATGTTGTTCTTTCTGGGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATATATGGGCACCTTAAGTTAGCATGTTGTTCTTTCTGGGATTT  900

seq1  TCCCTTAAAACTGGCATCCCAAACTATGTGAGGTATTTAAAATCAGTGGC  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCCCTTAAAACTGGCATCCCAAACTATGTGAGGTATTT-AAATCAGTGGC  949

seq1  TTAAAATATCTTTTGCATTCCAGTTCCTAAATCTGTCTAATTTTCCTTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATCTTTTGCATTCCAGTTCCTAAATCTGTCTAATTTTCCTTCC  999

seq1  AGGGAAATGACTCTTAATTGTTTCAACCCACTTACTCAGAAGATTCACTT  1050
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGGGAAATGACTCTTAATTGTTTC-ACCCACTTACTCAGAAGATTCACTT  1048

seq1  TCTACTCCTAAAATACCTATCTATAATTCGTAT-CTCAGTTGGCATCAGC  1099
      ||||||||||||||| ||||||||||||||||| ||||| ||||||||||
seq2  TCTACTCCTAAAATA-CTATCTATAATTCGTATCCTCAG-TGGCATCAGC  1096

seq1  ACCAAACCATACCGAAATGTTT-GAGAGAAAGAACGGAAAACCACAATGT  1148
      ||   | ||||||||||| ||| ||||||||| |||| ||||||| ||||
seq2  AC---AACATACCGAAATTTTTGGAGAGAAAGGACGG-AAACCAC-ATGT  1141

seq1  CACAATTCCTTTGTCAATTCTGATACACAATCA  1181
      ||||||||||||||||||| |||||| ||||||
seq2  CACAATTCCTTTGTCAATTTTGATAC-CAATCA  1173

seq1: chr12_49693164_49694361
seq2: B6Ng01-075F03.g_66_1251 (reverse)

seq1  TAACATGACTCTTCTTTGAGATTCATTCTGAAGAATGTGATGTGATTTGT  50
      ||||||||||  || |||||||||||||  |||||| ||| | |||||| 
seq2  TAACATGACTTCTC-TTGAGATTCATTCGAAAGAATTTGA-GGGATTTG-  47

seq1  GCTTCTAG-AAATAGTTAATTATTACTTCTAATTTCTTATTGCAGGCCTA  99
         ||||| |||||||  |||||||| ||||||||||||||||||  |||
seq2  --CTCTAGAAAATAGT--ATTATTAC-TCTAATTTCTTATTGCAG--CTA  90

seq1  C-AAAATTATATT-GCTCATTCATCTTTTAATCAAAAAGCATTAC-ATAT  146
      | ||||||||||| ||||  ||||| ||||||| ||||||||||| ||||
seq2  CAAAAATTATATTGGCTCCATCATC-TTTAATC-AAAAGCATTACAATAT  138

seq1  AGCTTATTAGACTTACTATTCTGACAGCATCCTTGTCTCCTCTTTTTATT  196
      |||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  AGCTTATTAGACTTACTA-TCTGACAGCATCC-TGTCTCCTCTTTTTATT  186

seq1  TTTCTGTATAAGAAAATTGAAACGTCTTTGACTGCAATTTCTTTCCCTCA  246
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  TTTCTGTATAAGAAAA-TGAAACGTCTTTGACTGCAATTTCTTT-CCTCA  234

seq1  TGTTTTCAAACAATTTAAATTTTATTTTTCTTTTAATGTGCTTTATTAGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAAACAATTTAAATTTTATTTTTCTTTTAATGTGCTTTATTAGT  284

seq1  AAGGAATTTTGAAATAAAATGTATTTGGATACATAAAAAAATTTAATGTG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTTTGAAATAAAATGTATTTGGATACATAAAAAAATTTAATGTG  334

seq1  AGGCTTCAGAGATTCTGTTTACAATACATTTTCTTAACTGTATGTAAGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCAGAGATTCTGTTTACAATACATTTTCTTAACTGTATGTAAGTT  384

seq1  CATTAAGTTGCATAGTATTTGAATTGGATTAATTTCTCTGTGTGTGATGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAGTTGCATAGTATTTGAATTGGATTAATTTCTCTGTGTGTGATGT  434

seq1  TTCTACTTATTTCCAAGTATTATTTTTAAATAATGGAAAAAATAAAATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTATTTCCAAGTATTATTTTTAAATAATGGAAAAAATAAAATAA  484

seq1  AATAAACTTGCATGCTTATATGTGGAATTTTTGTTTTACATTTTAGTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTTGCATGCTTATATGTGGAATTTTTGTTTTACATTTTAGTTCT  534

seq1  TTCACTTTATTTCCAATAAAATATTTAAAAGTATAAAAATGGTGAGCAAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTATTTCCAATAAAATATTTAAAAGTATAAAAATGGTGAGCAAT  584

seq1  CTTTGGTGCCTTCTGACACCAGTGATAAATGCTTTTAATATATCAAAACA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTGCCTTCTGACACCAGTGATAAATGCTTTTAATATATCAAAACA  634

seq1  AAACACAGTGCTATTAGTTTCTTGTTAAATTTTTGCTTTATTATAATCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGTGCTATTAGTTTCTTGTTAAATTTTTGCTTTATTATAATCTT  684

seq1  GTCAAAGTAATAAGTTTTCGTTCTCTTCTACGAAAATTTTGTTGGCATAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGTAATAAGTTTTCGTTCTCTTCTACGAAAATTTTGTTGGCATAA  734

seq1  TTTGGAACACTATGAATACATTAATTATCTCAAATTCTTTTTTCCTTAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACACTATGAATACATTAATTATCTCAAATTCTTTTTTCCTTAGA  784

seq1  CATTTCGCCATTTTTCTATTAATATTATTATTGCAGTGCAATGACATTTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCGCCATTTTTCTATTAATATTATTATTGCAGTGCAATGACATTTA  834

seq1  AAATAGTATTATTAATCTTTTTTTTCTAAAATAAATATTAGCTTCACATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTATTATTAATCTTTTTTTTCTAAAATAAATATTAGCTTCACATG  884

seq1  ACTTATTGTCCCTATATATCATTGGCATTTATTTTATAATGTCTTCTTTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTGTCCCTATATATCATTGGCATTTATTTTATAATGTCTTCTTTA  934

seq1  GGATTTTTCACATTCTTTATAGAGACATTGAGTTTAAATTTCCTGGCATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTTTCACATTCTTTATAGAGACATTGAGTTTAAATTTCCTGGCATC  984

seq1  TCTCAGCTTGAAGTTTATGATGATGAGCATGACTTCCAAAACACAAGTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTTGAAGTTTATGATGATGAGCATGACTTCCAAAACACAAGTTA  1034

seq1  ACATAGTGTGGTTGTTTTAATTTTTAAAAATTTTCCATATAGAAGCTTGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGTGGTTGTTTTAATTTTTAAAAATTTTCCATATAGAAGCTTGA  1084

seq1  GAACTGAGTCAGTAGTTAAGAGCACTGCATTCCAGGTTCCAGGTTTCCCA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGTCAGTAGTTAAGAGCACTGCATTCCAGGTTCCAGGTTTCCCA  1134

seq1  GAATCAGTTTCTGGCCTCAGATAAACATAGACCACAATAAACCACTGAAT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAGTTTCTGGCCTCAGATAAACATAGACCACAATAAACCACTGAAT  1184

seq1  TC  1198
      ||
seq2  TC  1186