BAC Information

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BAC

Clone NameB6Ng01-075M14
Chromosome12 (Build37)
Map Location 115,225,214 - 115,328,309
singlet/doubletdoublet
Overlap geneIgh, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2
Upstream geneBrf1, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1
Downstream geneIghv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-075M14.bB6Ng01-075M14.g
ACCDH892245DH892246
length1,1731,129
definitionDH892245|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M14, 5' end.DH892246|Mus musculus domesticus DNA, BAC clone: B6Ng01-075M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,327,127 - 115,328,309)(115,225,214 - 115,226,347)
sequence
gaattcaaaactcttgggaattatctattacattatcataaaattgattc
tcttattctctggctaattgataaaaaagggatatcccatcaacaataac
taaaatgttcatttttcttaaaagaattcactgtctataaatcattaaca
agacaaattctttaccctgactattactcacctcaaggtttctacttgct
tgtcagtctatagcagcaggatacacaaatagggctagactatgactatt
aaatccagtttaacactgaccctgtagctctggcagaagagtccaaattt
agattcccatgttcccattctgtgattatcactggcagtagttattatta
ggaggatcagtgcacatctctttgagtacctagaccagaattatatgtat
ttataggtgtataatatgagttgcagcttatggagtcttggggaagcttg
ttaaagctccagggttctgtaagacattcttgtgcagccgctggattcac
tttcagagaatactatatcagatgggtcctgtagattttagaaaaagatc
ttgagtccttgatttaattacaaacacagctggggggtgattacagagta
tgcttcctatgtgagaagggcacttcccatttcaagagatcatacaaaaa
ataaaatttcatgcctccaaataaacagattggagacttcttttttccct
gagaagaaatggagaaggcaactggggagggatcaataagggcttgagta
ggagcagagaagggattgagatataatgtgagtaaaaaattaaataaggg
agaaaatgagatacagactatactatccaacttctgaacaacagggaaac
tgatgtcatttcattctgagcctggagtcaaacttccatgaaggattctc
aggaacattgtgtggtttctcagttcagacagggttcttggtcaaccaaa
accaaatataagcatatagacatggttttagcttctctgggctgcttctc
catctgaaattttcctttggatcatttccacatttaagtgtagatctatg
ttatcttgaagattttatttcttgatgtagtattacataataataagatg
gagtaaattgctggggagtgcaggaaatacctgtcaggagacatcgatgc
taagagctccatgaacttgatgt
gaattcatttctttatgaatagcaaatattaacacttaacttcttttact
atacccaaccttactttgtctgagattccgaaataatcaacttttataag
cttagaaaacgcacaactctaattgaagttattttctcttccatgctcct
gattaatgaatgcatatgtatttgttttatgataatcacttgctaaaaag
aaaaaaataggattaaaaaaccttatgaaacaaataccaaaaattgttga
aaataccatatgggtattggttgataaataatgtgtttgtagtatttttt
attacttgggtcagttggatgagtaaaaaggaatcacccttttaaaacta
agctaacgatacctataaagtatttttccagggtatttactatgttgtcc
aatgcatacagagtaaagttctttgttaaggggaatacacatacacagag
atagcagagggggtgagggagagaaagagacaagagaccaaatacgtgca
agatactaattggaaaaaaagacacagggagaatgaaatagagaattcaa
atctgaacttgccctttttaaaatgatataaagtgacttctcattttgac
tctaaattgctttcactgtggggaattcacccatttctgaagtttctgta
cctgcacagaaggaacaaaagttatgtaaatgaattggagtcaaagagta
atgaagataaccctatccactcttgattattaccaagaaatgtccttggc
gtccagagcatgggactcattcaggatcttgcacaaaagttaatgattaa
tgacctggttaatgagagcagttttactaaatcattgactactctgggtt
caggttgaactagccatacagccttaatagagaaagaaattacgagaaat
ctgtctttctattgaatcttttacatctagtctacatgattcactgacga
atttttattgcattatgtgaaccacattcattcaaatacttttttattag
atattttcctttatttaatatttcaaatgctatcccctttcctgattcgc
cctctgaaaatccctacccttaacttttcccctccccttctcacaaccac
cacttcccactttctggcttggcatccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115327127_115328309
seq2: B6Ng01-075M14.b_46_1218 (reverse)

seq1  ACATCAGTTTCAT-GAGCTCTTTTGGCATCTGATG-CTCCTGGACAGTTA  48
      ||||||  ||||| ||||||  || ||||| |||| ||||| ||||| ||
seq2  ACATCAAGTTCATGGAGCTC--TTAGCATC-GATGTCTCCT-GACAGGTA  46

seq1  TTT-CTGCACTCACCAGCAAATTTACT-CATCTTATTATTATGTAATAAC  96
      ||| |||||||| ||||| |||||||| ||||||||||||||||||||  
seq2  TTTCCTGCACTCCCCAGC-AATTTACTCCATCTTATTATTATGTAATA--  93

seq1  TTACATCCAAGAATATAATCTTTCAAGATAACATAGGATCCTACAACCTT  146
       |||||| |  |||| |||| |||||||||||||| ||| |||||  |||
seq2  CTACATCAAGAAATAAAATC-TTCAAGATAACATA-GAT-CTACA--CTT  138

seq1  AAATGTGGAAATGATCCAAAGGAAAATTTCAGATGGAGAAGCAGCCCAGA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGAAATGATCCAAAGGAAAATTTCAGATGGAGAAGCAGCCCAGA  188

seq1  GAAGCTAAAACCATGTCTATTATGCTTATATTTGGTTTTTGGTTGACCAA  246
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  GAAGCTAAAACCATGTCTA-TATGCTTATATTTGG-TTTTGGTTGACCAA  236

seq1  GAACCCTGTCTGAACTGAGAAACCACACAATGTTCCTGAGAATCCTTCAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCTGTCTGAACTGAGAAACCACACAATGTTCCTGAGAATCCTTCAT  286

seq1  GGAAGTTTGACTCCAGGCTCAGAATGAAATGACATCAGTTTCCCTGTTGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTTGACTCCAGGCTCAGAATGAAATGACATCAGTTTCCCTGTTGT  336

seq1  TCAGAAGTTGGATAGTATAGTCTGTATCTCATTTTCTCCCTTATTTAATT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTTGGATAGTATAGTCTGTATCTCATTTTCTCCCTTATTTAATT  386

seq1  TTTTACTCACATTATATCTCAATCCCTTCTCTGCTCCTACTCAAGCCCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCACATTATATCTCAATCCCTTCTCTGCTCCTACTCAAGCCCTT  436

seq1  ATTGATCCCTCCCCAGTTGCCTTCTCCATTTCTTCTCAGGGAAAAAAGAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCCCTCCCCAGTTGCCTTCTCCATTTCTTCTCAGGGAAAAAAGAA  486

seq1  GTCTCCAATCTGTTTATTTGGAGGCATGAAATTTTATTTTTTGTATGATC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAATCTGTTTATTTGGAGGCATGAAATTTTATTTTTTGTATGATC  536

seq1  TCTTGAAATGGGAAGTGCCCTTCTCACATAGGAAGCATACTCTGTAATCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAAATGGGAAGTGCCCTTCTCACATAGGAAGCATACTCTGTAATCA  586

seq1  CCCCCCAGCTGTGTTTGTAATTAAATCAAGGACTCAAGATCTTTTTCTAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCAGCTGTGTTTGTAATTAAATCAAGGACTCAAGATCTTTTTCTAA  636

seq1  AATCTACAGGACCCATCTGATATAGTATTCTCTGAAAGTGAATCCAGCGG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAGGACCCATCTGATATAGTATTCTCTGAAAGTGAATCCAGCGG  686

seq1  CTGCACAAGAATGTCTTACAGAACCCTGGAGCTTTAACAAGCTTCCCCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACAAGAATGTCTTACAGAACCCTGGAGCTTTAACAAGCTTCCCCAA  736

seq1  GACTCCATAAGCTGCAACTCATATTATACACCTATAAATACATATAATTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATAAGCTGCAACTCATATTATACACCTATAAATACATATAATTC  786

seq1  TGGTCTAGGTACTCAAAGAGATGTGCACTGATCCTCCTAATAATAACTAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTAGGTACTCAAAGAGATGTGCACTGATCCTCCTAATAATAACTAC  836

seq1  TGCCAGTGATAATCACAGAATGGGAACATGGGAATCTAAATTTGGACTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGATAATCACAGAATGGGAACATGGGAATCTAAATTTGGACTCT  886

seq1  TCTGCCAGAGCTACAGGGTCAGTGTTAAACTGGATTTAATAGTCATAGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAGAGCTACAGGGTCAGTGTTAAACTGGATTTAATAGTCATAGTC  936

seq1  TAGCCCTATTTGTGTATCCTGCTGCTATAGACTGACAAGCAAGTAGAAAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCTATTTGTGTATCCTGCTGCTATAGACTGACAAGCAAGTAGAAAC  986

seq1  CTTGAGGTGAGTAATAGTCAGGGTAAAGAATTTGTCTTGTTAATGATTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGTGAGTAATAGTCAGGGTAAAGAATTTGTCTTGTTAATGATTTA  1036

seq1  TAGACAGTGAATTCTTTTAAGAAAAATGAACATTTTAGTTATTGTTGATG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGTGAATTCTTTTAAGAAAAATGAACATTTTAGTTATTGTTGATG  1086

seq1  GGATATCCCTTTTTTATCAATTAGCCAGAGAATAAGAGAATCAATTTTAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCCCTTTTTTATCAATTAGCCAGAGAATAAGAGAATCAATTTTAT  1136

seq1  GATAATGTAATAGATAATTCCCAAGAGTTTTGAATTC  1183
      |||||||||||||||||||||||||||||||||||||
seq2  GATAATGTAATAGATAATTCCCAAGAGTTTTGAATTC  1173

seq1: chr12_115225214_115226347
seq2: B6Ng01-075M14.g_69_1197

seq1  GAATTCATTTCTTTATGAATAGCAAATATTAACACTTAACTTCTTTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTTATGAATAGCAAATATTAACACTTAACTTCTTTTACT  50

seq1  ATACCCAACCTTACTTTGTCTGAGATTCCGAAATAATCAACTTTTATAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAACCTTACTTTGTCTGAGATTCCGAAATAATCAACTTTTATAAG  100

seq1  CTTAGAAAACGCACAACTCTAATTGAAGTTATTTTCTCTTCCATGCTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAACGCACAACTCTAATTGAAGTTATTTTCTCTTCCATGCTCCT  150

seq1  GATTAATGAATGCATATGTATTTGTTTTATGATAATCACTTGCTAAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATGAATGCATATGTATTTGTTTTATGATAATCACTTGCTAAAAAG  200

seq1  AAAAAAATAGGATTAAAAAACCTTATGAAACAAATACCAAAAATTGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATAGGATTAAAAAACCTTATGAAACAAATACCAAAAATTGTTGA  250

seq1  AAATACCATATGGGTATTGGTTGATAAATAATGTGTTTGTAGTATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCATATGGGTATTGGTTGATAAATAATGTGTTTGTAGTATTTTTT  300

seq1  ATTACTTGGGTCAGTTGGATGAGTAAAAAGGAATCACCCTTTTAAAACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTGGGTCAGTTGGATGAGTAAAAAGGAATCACCCTTTTAAAACTA  350

seq1  AGCTAACGATACCTATAAAGTATTTTTCCAGGGTATTTACTATGTTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACGATACCTATAAAGTATTTTTCCAGGGTATTTACTATGTTGTCC  400

seq1  AATGCATACAGAGTAAAGTTCTTTGTTAAGGGGAATACACATACACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATACAGAGTAAAGTTCTTTGTTAAGGGGAATACACATACACAGAG  450

seq1  ATAGCAGAGGGGGTGAGGGAGAGAAAGAGACAAGAGACCAAATACGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGAGGGGGTGAGGGAGAGAAAGAGACAAGAGACCAAATACGTGCA  500

seq1  AGATACTAATTGGAAAAAAAGACACAGGGAGAATGAAATAGAGAATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTAATTGGAAAAAAAGACACAGGGAGAATGAAATAGAGAATTCAA  550

seq1  ATCTGAACTTGCCCTTTTTAAAATGATATAAAGTGACTTCTCATTTTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAACTTGCCCTTTTTAAAATGATATAAAGTGACTTCTCATTTTGAC  600

seq1  TCTAAATTGCTTTCACTGTGGGGAATTCACCCATTTCTGAAGTTTCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATTGCTTTCACTGTGGGGAATTCACCCATTTCTGAAGTTTCTGTA  650

seq1  CCTGCACAGAAGGAACAAAAGTTATGTAAATGAATTGGAGTCAAAGAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACAGAAGGAACAAAAGTTATGTAAATGAATTGGAGTCAAAGAGTA  700

seq1  ATGAAGATAACCCTATCCACTCTTGATTATTACCAAGAAATGTCCTTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGATAACCCTATCCACTCTTGATTATTACCAAGAAATGTCCTTGGC  750

seq1  GTCCAGAGCATGGGACTCATTCAGGATCTTGCACAAAAGTTAATGATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGCATGGGACTCATTCAGGATCTTGCACAAAAGTTAATGATTAA  800

seq1  TGACCTGGTTAATGAGAGCAGTTTTACTAAATCATTGACTACTCTGGGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGTTAATGAGAGCAGTTTTACTAAATCATTGACTACTCTGGGTT  850

seq1  CAGGTTGAACTAGCCATACAGCCTTAATAAGAGAAAGAAATTACGAGAAA  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAGGTTGAACTAGCCATACAGCCTTAAT-AGAGAAAGAAATTACGAGAAA  899

seq1  TCTGTCTTTCTATTGAATCTTTTACATCTAGTCTACATGATTCACTGACG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTTTCTATTGAATCTTTTACATCTAGTCTACATGATTCACTGACG  949

seq1  AA-TTTTAATGCATTATGTGAACCACATTCATTCAAATACTTTTTTATTA  999
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTGCATTATGTGAACCACATTCATTCAAATACTTTTTTATTA  999

seq1  GATATTTT-CTTTATTT-ATATTTCAAATGCTATCCCCTTTCCTGATTCG  1047
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  GATATTTTCCTTTATTTAATATTTCAAATGCTATCCCCTTTCCTGATTCG  1049

seq1  CCCTCTGAAAATCCCCTACCCTTACACCTTTTCCCCTCCCCCTTCTCACC  1097
      |||||||||||| ||||||||||  | |||||||||| ||||||||||| 
seq2  CCCTCTGAAAAT-CCCTACCCTT--AACTTTTCCCCT-CCCCTTCTCAC-  1094

seq1  AACCCACCCACTCCCACTTTCTGGCTTTGGCATCCCT  1134
       | |||||   |||||||||||||| |||||||||||
seq2  -AACCACCACTTCCCACTTTCTGGC-TTGGCATCCCT  1129