BAC Information

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BAC

Clone NameB6Ng01-076B23
Chromosome12 (Build37)
Map Location 27,542,739 - 27,717,626
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076B23.bB6Ng01-076B23.g
ACCDH892482DH892483
length1,1061,069
definitionDH892482|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B23, 5' end.DH892483|Mus musculus domesticus DNA, BAC clone: B6Ng01-076B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,542,739 - 27,543,832)(27,716,562 - 27,717,626)
sequence
gaattctgaaagtttgctgagttatggtttacatgttttgaagaaaacac
ctagcagtttctcagaacttagcatcggccctgtgcttttgttttctttg
tttcttggaagaatgactgaaaagcaggtttcatttttgccatttatcta
aagctaagtcagcaaccttgaagtagtgcaagggtgctcaaaagcctaga
taagtggcaaagtagacaactcaagtccaccttgggtcagaacatctgcc
ctccccattacataccagtccagtcaggggcaaaataaagcctttctcat
cctttacccttcactaatttccagtgtaatgcaacccaagtacaaacatt
tatggaatccttgtcatttgtcaattaaatgcaatacctggagaaatttt
atacaattaagaggcagtctcttaggccataagtatccaagtgattacaa
aacagaccaatctcatattgctaatagttttaggtaaagatcatgttaat
agcttaagtgtttattactttaaactcacccttatcctgagattactcct
ggctacagagcagtgccacttatgccagagtgttctttctcagaatatct
catcctcgggtaagatgccagatgatcttgtaaaccagaattctgctcca
gaagttatcggtacccctgtttggatggtaggtttactggcttcactgca
tttcaggaaggtctcttcttcctcgacacatgatgctccaacagggaact
ctgggaaagtatgtataaagctcacctgtctccttgtaactggggcagga
acttcttcttcttgaagttctgtggtcttaaaagggcgattctgtttcat
tttaaatttctttgctattttttcctcaatgaaggaaacattaccttcat
cttgaaggaattttttggtgtcttgggtcaagcctagttaggaacctctg
accatgggagagtggtcacaagacacatgccacatttttttctggcttta
tgccaaccaattttggctctgagctttaggcttagaaaagttcatgagta
cattttattgacaaaaatcaattcttatgggcttaagctttaaaatgtgt
agccct
gaattctctgtctaagggcggctgcaactactgctgcctttgtaaaacca
cattgctgggcttagaggtgagcttctactgatccatgtgaaacattctt
cccatggtatctagaacatggagagagatgaaagaaggaatcaatgtcct
aagggaaaagtaaagtcacttttgtgacccaggggacactccatgtgaga
acaggtgccaggaagacttagtttagctttcaggaacaccaccaagggct
acttaggtaaaagaagtcagatataaaaactgactaatgcagtctttgct
gcatccatcagttttcacagtacacctgacctctattcagacccatggca
gcttcaaagatgaaggcagtaccaagaatagtttctgttacagccaaaaa
tcacatgggtagtcatttatgaaagtccaccactcccagttggtcccatt
tggcactaatgcaatcctaggggaagcagaaaaactaaacagtattatta
gcaatgacagaaagcttttagcctggctcccctgtaccatgatggatgct
gtttatcatattttacctgttgcttttaaactttccttgtcagaatgaat
catggctaaggggaaggggaccagattatagacaatgcgatttgtctaat
cgcagttgcccctcgtcaagagccgtgagcgaatgtaagcagaagcaacc
cgcaggctgaaaatcattctccctgccaaaactgtcaggggtgcacctgg
ctctgtatgaaagcccatactctgtgaagggggtggttccctttcctgta
ccggggagccaggtagtggaggtgcaggcttgagtcttgctatctagtgg
gttgataatgaagattaatttactcattccttatcgatgtaattggaaca
tagagaggatgtcttacagctgagtggagcctgcccttagagaccgcctt
ccctgtactcccttgtcagcattggaactggtgtggaaaccttattcatg
atggactcttgctttgcttctttcttggtgattcctgaatcattctagag
aggcattataccatacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27542739_27543832
seq2: B6Ng01-076B23.b_45_1150

seq1  GAATTCTGAAAGTTTGCTGAGTTATGGTTTACATGTTTTGAAGAAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAAGTTTGCTGAGTTATGGTTTACATGTTTTGAAGAAAACAC  50

seq1  CTAGCAGTTTCTCAGAACTTAGCATCGGCCCTGTGCTTTTGTTTTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGTTTCTCAGAACTTAGCATCGGCCCTGTGCTTTTGTTTTCTTTG  100

seq1  TTTCTTGGAAGAATGACTGAAAAGCAGGTTTCATTTTTGCCATTTATCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGAAGAATGACTGAAAAGCAGGTTTCATTTTTGCCATTTATCTA  150

seq1  AAGCTAAGTCAGCAACCTTGAAGTAGTGCAAGGGTGCTCAAAAGCCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGTCAGCAACCTTGAAGTAGTGCAAGGGTGCTCAAAAGCCTAGA  200

seq1  TAAGTGGCAAAGTAGACAACTCAAGTCCACCTTGGGTCAGAACATCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGCAAAGTAGACAACTCAAGTCCACCTTGGGTCAGAACATCTGCC  250

seq1  CTCCCCATTACATACCAGTCCAGTCAGGGGCAAAATAAAGCCTTTCTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATTACATACCAGTCCAGTCAGGGGCAAAATAAAGCCTTTCTCAT  300

seq1  CCTTTACCCTTCACTAATTTCCAGTGTAATGCAACCCAAGTACAAACATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCCTTCACTAATTTCCAGTGTAATGCAACCCAAGTACAAACATT  350

seq1  TATGGAATCCTTGTCATTTGTCAATTAAATGCAATACCTGGAGAAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAATCCTTGTCATTTGTCAATTAAATGCAATACCTGGAGAAATTTT  400

seq1  ATACAATTAAGAGGCAGTCTCTTAGGCCATAAGTATCCAAGTGATTACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTAAGAGGCAGTCTCTTAGGCCATAAGTATCCAAGTGATTACAA  450

seq1  AACAGACCAATCTCATATTGCTAATAGTTTTAGGTAAAGATCATGTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCAATCTCATATTGCTAATAGTTTTAGGTAAAGATCATGTTAAT  500

seq1  AGCTTAAGTGTTTATTACTTTAAACTCACCCTTATCCTGAGATTACTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAGTGTTTATTACTTTAAACTCACCCTTATCCTGAGATTACTCCT  550

seq1  GGCTACAGAGCAGTGCCACTTATGCCAGAGTGTTCTTTCTCAGAATATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGAGCAGTGCCACTTATGCCAGAGTGTTCTTTCTCAGAATATCT  600

seq1  CATCCTCGGGTAAGATGCCAGATGATCTTGTAAACCAGAATTCTGCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCGGGTAAGATGCCAGATGATCTTGTAAACCAGAATTCTGCTCCA  650

seq1  GAAGTTATCGGTACCCCTGTTTGGATGGTAGGTTTACTGGCTTCACTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTATCGGTACCCCTGTTTGGATGGTAGGTTTACTGGCTTCACTGCA  700

seq1  TTTCAGGAAGGTCTCTTCTTCCTCGACACATGATGCTCCAACAGGGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAAGGTCTCTTCTTCCTCGACACATGATGCTCCAACAGGGAACT  750

seq1  CTGGGAAAGTATGTATAAAGCTCACCTGTCTCCTTGTAACT-GGGCAGGA  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGGGAAAGTATGTATAAAGCTCACCTGTCTCCTTGTAACTGGGGCAGGA  800

seq1  ACTTCTTCTTCTTGAAGTTCTGTGGTCTTAAAAGGGCGATTCTGTTTCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCTTCTTGAAGTTCTGTGGTCTTAAAAGGGCGATTCTGTTTCAT  850

seq1  TTTAAATTTCTTTGCTATTTTTTCCTCAATGAA-GAAACATTACC-TCAT  897
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TTTAAATTTCTTTGCTATTTTTTCCTCAATGAAGGAAACATTACCTTCAT  900

seq1  CTTGAAGGAA-TTTTTGGTGTCTT-GGTCAAGCCTAGTTAGGAACCTCTG  945
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  CTTGAAGGAATTTTTTGGTGTCTTGGGTCAAGCCTAGTTAGGAACCTCTG  950

seq1  ACCAT-GGAGAGTGGTCACAAGACACATGCCACATTTTTTTCTGGCTTTA  994
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGGAGAGTGGTCACAAGACACATGCCACATTTTTTTCTGGCTTTA  1000

seq1  TGCCAACCAA-TTTGGCTCTGAGCTTTTAGGGCTCAGAAA--GTCATGAG  1041
      |||||||||| ||||||||||||||||   |||| |||||   |||||||
seq2  TGCCAACCAATTTTGGCTCTGAGCTTT--AGGCTTAGAAAAGTTCATGAG  1048

seq1  TACATTTTA-TGACAAAAATCAATTCTTATGG--CTAAGCTTTAAA--GT  1086
      ||||||||| ||||||||||||||||||||||   |||||||||||  ||
seq2  TACATTTTATTGACAAAAATCAATTCTTATGGGCTTAAGCTTTAAAATGT  1098

seq1  GTAGCCTT  1094
      |||||| |
seq2  GTAGCCCT  1106

seq1: chr12_27716562_27717626
seq2: B6Ng01-076B23.g_70_1138 (reverse)

seq1  TCTGTATGTGTTTATTG-CTCTCATAGAATGATCAGGGAATCAACAAAGA  49
      |||||||| || || || ||||| |||||||||   ||||||| |||  |
seq2  TCTGTATG-GTATAATGCCTCTC-TAGAATGATTCAGGAATCACCAAGAA  48

seq1  AGAAGGCAAGCAGGAGTCCATCATGA--TAGGTTTCCACA-CAGTT-CAA  95
      |||||  ||||| |||||||||||||   ||||||||||| ||||| |||
seq2  AGAAGCAAAGCAAGAGTCCATCATGAATAAGGTTTCCACACCAGTTCCAA  98

seq1  TGCTGACAAGGGGAGTACAGGG-AGGC-GTCTCTAAGGGCAGGCTCCACT  143
      ||||||||| |||||||||||| |||| ||||||||||||||||||||||
seq2  TGCTGACAA-GGGAGTACAGGGAAGGCGGTCTCTAAGGGCAGGCTCCACT  147

seq1  CAGCTGTAAGACATCCTCTCTATGTTCCAATTTACATCGATAAGGAATGA  193
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAGCTGTAAGACATCCTCTCTATGTTCCAA-TTACATCGATAAGGAATGA  196

seq1  GTAAATTAATCTTCATTATCAACCCACTAGATAGCAAGACTCAAGCCTGC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATTAATCTTCATTATCAACCCACTAGATAGCAAGACTCAAGCCTGC  246

seq1  ACCTCCACTACCTGGCTCCCCGGTACAGG-AAGGGAACCACCCCCTTCAC  292
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCTCCACTACCTGGCTCCCCGGTACAGGAAAGGGAACCACCCCCTTCAC  296

seq1  AGAGTATGGGCTTTCATACAGAGCCAGGTGCACCCCTGACAGTTTTGGCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATGGGCTTTCATACAGAGCCAGGTGCACCCCTGACAGTTTTGGCA  346

seq1  GGGAGAATGATTTTCAGCCTGCGGGTTGCTTCTGCTTACATTCGCTCACG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATGATTTTCAGCCTGCGGGTTGCTTCTGCTTACATTCGCTCACG  396

seq1  GCTCTTGACGAGGGGCAACTGCGATTAGACAAATCGCATTGTCTATAATC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGACGAGGGGCAACTGCGATTAGACAAATCGCATTGTCTATAATC  446

seq1  TGGTCCCCTTCCCCTTAGCCATGATTCATTCTGACAAGGAAAGTTTAAAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCCTTCCCCTTAGCCATGATTCATTCTGACAAGGAAAGTTTAAAA  496

seq1  GCAACAGGTAAAATATGATAAACAGCATCCATCATGGTACAGGGGAGCCA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGGTAAAATATGATAAACAGCATCCATCATGGTACAGGGGAGCCA  546

seq1  GGCTAAAAGCTTTCTGTCATTGCTAATAATACTGTTTAGTTTTTCTGCTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAAAGCTTTCTGTCATTGCTAATAATACTGTTTAGTTTTTCTGCTT  596

seq1  CCCCTAGGATTGCATTAGTGCCAAATGGGACCAACTGGGAGTGGTGGACT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAGGATTGCATTAGTGCCAAATGGGACCAACTGGGAGTGGTGGACT  646

seq1  TTCATAAATGACTACCCATGTGATTTTTGGCTGTAACAGAAACTATTCTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAATGACTACCCATGTGATTTTTGGCTGTAACAGAAACTATTCTT  696

seq1  GGTACTGCCTTCATCTTTGAAGCTGCCATGGGTCTGAATAGAGGTCAGGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGCCTTCATCTTTGAAGCTGCCATGGGTCTGAATAGAGGTCAGGT  746

seq1  GTACTGTGAAAACTGATGGATGCAGCAAAGACTGCATTAGTCAGTTTTTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTGAAAACTGATGGATGCAGCAAAGACTGCATTAGTCAGTTTTTA  796

seq1  TATCTGACTTCTTTTACCTAAGTAGCCCTTGGTGGTGTTCCTGAAAGCTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACTTCTTTTACCTAAGTAGCCCTTGGTGGTGTTCCTGAAAGCTA  846

seq1  AACTAAGTCTTCCTGGCACCTGTTCTCACATGGAGTGTCCCCTGGGTCAC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTCTTCCTGGCACCTGTTCTCACATGGAGTGTCCCCTGGGTCAC  896

seq1  AAAAGTGACTTTACTTTTCCCTTAGGACATTGATTCCTTCTTTCATCTCT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGACTTTACTTTTCCCTTAGGACATTGATTCCTTCTTTCATCTCT  946

seq1  CTCCATGTTCTAGATACCATGGGAAGAATGTTTCACATGGATCAGTAGAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGTTCTAGATACCATGGGAAGAATGTTTCACATGGATCAGTAGAA  996

seq1  GCTCACCTCTAAGCCCAGCAATGTGGTTTTACAAAGGCAGCAGTAGTTGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTCTAAGCCCAGCAATGTGGTTTTACAAAGGCAGCAGTAGTTGC  1046

seq1  AGCCGCCCTTAGACAGAGAATTC  1065
      |||||||||||||||||||||||
seq2  AGCCGCCCTTAGACAGAGAATTC  1069