BAC Information

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BAC

Clone NameB6Ng01-076G09
Chromosome12 (Build37)
Map Location 53,660,193 - 53,768,374
singlet/doubletdoublet
Overlap geneArhgap5
Upstream geneCoch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
Downstream geneAkap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076G09.bB6Ng01-076G09.g
ACCDH892675DH892676
length953616
definitionDH892675|Mus musculus domesticus DNA, BAC clone: B6Ng01-076G09, 5' end.DH892676|Mus musculus domesticus DNA, BAC clone: B6Ng01-076G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,660,193 - 53,661,152)(53,767,760 - 53,768,374)
sequence
gaattcaatttagtggttttatttcttaatcttgccacttactgtctgcc
tcaggcaggttcatctttctagatctcattttttttcatcacagagtggc
aatgaaagaataaatacaaggctgatgagataatgcttgaccagtaagat
gtgtaaatcggtcatgttttctttaagtgatcattaaaaaagcaaaaaaa
aaaaaaaaaaaaaactcaaatgaagtatccttaaaattccaagtaatgat
tgtctataagtcatggggataattttttttctgatctatatttttacact
taaattacttgttaatgtcaaataaaccttatggtacacttttagcatgt
tcctttcttgttctttaaatcagccctttattgataagataattatttaa
cctatttatttaaaacattacaaagtagagtttaaaggtccaaattagaa
ttgagatacataatcttactatttgtctattttttatggtctcttaataa
gtctgtatataaacaaattaggaaagagtattattaaaattctttaatac
actctatgctggtgtgttaagatacagagtttgttgataaaatgctttct
gcatggggttgtctcttcctgatctgtgtgtttcctggcctgaagggaaa
ggtaactaatgagaaatgtcttttggcagaaaagtatcctttcagtttgc
cattaaccagtaataagttaaaatttcattctctcaactaagttttgagt
tttgtcttttagatcataatatcaatctagcatcaatggaagtgacagtc
aatgctgtagctggagctctcaaagctttctttgctgacctgccggatcc
tttgattcatattcactccaccagagctattgagcagcaagtaagcacaa
acttttttgctaggagggaggtgcagggttaaagagagtgatgatggtgt
ttt
gaattcacttactttacagcttgcttgtgttggtcaccctctgattggca
cttctggcctttaaaatgaccctgaagataccagcagcccaatcattgtc
actgggtgcctagtgttcagacatcacaatttcttttttttttttttttt
ggttttggttcttttgggttttgttgttgttggttttttgagacagggtt
tctctgtgtagccctggctttcctggtactcaagctgtagaccaggctgg
cctcgaactcagaaatccgcctgcctctgcctcccgaatgctgggattaa
aggcgtgtgccaccaggtccggctgacatcacaatttcttactcctgtct
ttctgcaactcacagagaactagtaaattcagttttattactcctcaggt
attttaagaccagtgtcaggagctatataggagaggctatggctagcagg
tgacattcctggaggtaggccactggttttgcatggtttactgtggatga
gctctgagaggcaagatcccaagcgacatcatctcaggattgcttcttgt
tagctaatatgccttttcccatcactataacacagtctaatgattcatgg
gtattagcccacccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53660193_53661152
seq2: B6Ng01-076G09.b_45_997

seq1  GAATTCAATTTAGTGGTTTTATTTCTTAATCTTGCCACTTACTGTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAGTGGTTTTATTTCTTAATCTTGCCACTTACTGTCTGCC  50

seq1  TCAGGCAGGTTCATCTTTCTAGATCTCATTTTTTTTCATCACAGAGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAGGTTCATCTTTCTAGATCTCATTTTTTTTCATCACAGAGTGGC  100

seq1  AATGAAAGAATAAATACAAGGCTGATGAGATAATGCTTGACCAGTAAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGAATAAATACAAGGCTGATGAGATAATGCTTGACCAGTAAGAT  150

seq1  GTGTAAATCGGTCATGTTTTCTTTAAGTGATCATTAAAAAAGCAAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATCGGTCATGTTTTCTTTAAGTGATCATTAAAAAAGCAAAAAAA  200

seq1  AAAAAAAAAAAAAACTCAAATGAAGTATCCTTAAAATTCCAAGTAATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAACTCAAATGAAGTATCCTTAAAATTCCAAGTAATGAT  250

seq1  TGTCTATAAGTCATGGGGATAATTTTTTTTCTGATCTATATTTTTACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATAAGTCATGGGGATAATTTTTTTTCTGATCTATATTTTTACACT  300

seq1  TAAATTACTTGTTAATGTCAAATAAACCTTATGGTACACTTTTAGCATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACTTGTTAATGTCAAATAAACCTTATGGTACACTTTTAGCATGT  350

seq1  TCCTTTCTTGTTCTTTAAATCAGCCCTTTATTGATAAGATAATTATTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTGTTCTTTAAATCAGCCCTTTATTGATAAGATAATTATTTAA  400

seq1  CCTATTTATTTAAAACATTACAAAGTAGAGTTTAAAGGTCCAAATTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTATTTAAAACATTACAAAGTAGAGTTTAAAGGTCCAAATTAGAA  450

seq1  TTGAGATACATAATCTTACTATTTGTCTATTTTTTATGGTCTCTTAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATACATAATCTTACTATTTGTCTATTTTTTATGGTCTCTTAATAA  500

seq1  GTCTGTATATAAACAAATTAGGAAAGAGTATTATTAAAATTCTTTAATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTATATAAACAAATTAGGAAAGAGTATTATTAAAATTCTTTAATAC  550

seq1  ACTCTATGCTGGTGTGTTAAGATACAGAGTTTGTTGATAAAATGCTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTATGCTGGTGTGTTAAGATACAGAGTTTGTTGATAAAATGCTTTCT  600

seq1  GCATGGGGTTGTCTCTTCCTGATCTGTGTGTTTCCTGGCCTGAAGGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGTTGTCTCTTCCTGATCTGTGTGTTTCCTGGCCTGAAGGGAAA  650

seq1  GGTAACTAATGAGAAATGTCTTTTGGCAGAAAAGTATCCTTTCAGTTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTAATGAGAAATGTCTTTTGGCAGAAAAGTATCCTTTCAGTTTGC  700

seq1  CATTAACCAGTAATAAGTTAAAATTTCATTCTCTCAACTAAGTTTTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCAGTAATAAGTTAAAATTTCATTCTCTCAACTAAGTTTTGAGT  750

seq1  TTTGTCTTTTAGATCATAATATCAATCTAGCATCAATGGAAGTGACAGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTTAGATCATAATATCAATCTAGCATCAATGGAAGTGACAGTC  800

seq1  AATGCTGTAGCTGGAGCTCTCAAAGCTTTCTTTGCTGACCTGCCGGATCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTGTAGCTGGAGCTCTCAAAGCTTTCTTTGCTGACCTGCCGGATCC  850

seq1  TTTGATTCCATATTCACTCCACCCAGAGCTATTGGAAGCAGCAAGTAAGC  900
      ||||||| ||||||||||||| ||||||||||||  ||||||||||||||
seq2  TTTGATT-CATATTCACTCCA-CCAGAGCTATTG--AGCAGCAAGTAAGC  896

seq1  ACAAACTTTTTTTGCCAGGAGGGAGGGTGCAGGGGTAAAGAAGAGTGATG  950
      |||||| |||||||| |||||||| ||||||||| ||||| |||||||||
seq2  ACAAAC-TTTTTTGCTAGGAGGGA-GGTGCAGGGTTAAAG-AGAGTGATG  943

seq1  ATGGTGTTTT  960
      ||||||||||
seq2  ATGGTGTTTT  953

seq1: chr12_53767760_53768374
seq2: B6Ng01-076G09.g_67_682 (reverse)

seq1  TAGGGTGGGCTAATACCCATGAATCATTAGACTGTGTTATAGTGATGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGGGCTAATACCCATGAATCATTAGACTGTGTTATAGTGATGGGA  50

seq1  AAAGGCATATTAGCT-ACAAGAAGCAATCCTGAGATGATGTCGCTTGGGA  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAGGCATATTAGCTAACAAGAAGCAATCCTGAGATGATGTCGCTTGGGA  100

seq1  TCTTGCCTCTCAGAGCTCATCCACAGTAAACCATGCAAAACCAGTGGCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTCTCAGAGCTCATCCACAGTAAACCATGCAAAACCAGTGGCCT  150

seq1  ACCTCCAGGAATGTCACCTGCTAGCCATAGCCTCTCCTATATAGCTCCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGGAATGTCACCTGCTAGCCATAGCCTCTCCTATATAGCTCCTG  200

seq1  ACACTGGTCTTAAAATACCTGAGGAGTAATAAAACTGAATTTACTAGTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTCTTAAAATACCTGAGGAGTAATAAAACTGAATTTACTAGTTC  250

seq1  TCTGTGAGTTGCAGAAAGACAGGAGTAAGAAATTGTGATGTCAGCCGGAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAGTTGCAGAAAGACAGGAGTAAGAAATTGTGATGTCAGCCGGAC  300

seq1  CTGGTGGCACACGCCTTTAATCCCAGCATTCGGGAGGCAGAGGCAGGCGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCACACGCCTTTAATCCCAGCATTCGGGAGGCAGAGGCAGGCGG  350

seq1  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGCTTGAGTACCAGGAAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGCTTGAGTACCAGGAAAGC  400

seq1  CAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAACAACAACAAAACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTACACAGAGAAACCCTGTCTCAAAAAACCAACAACAACAAAACC  450

seq1  CAAAAGAACCAAAACCAAAAAAAAAAAAAAAAAGAAATTGTGATGTCTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAACCAAAACCAAAAAAAAAAAAAAAAAGAAATTGTGATGTCTGA  500

seq1  ACACTAGGCACCCAGTGACAATGATTGGGCTGCTGGTATCTTCAGGGTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAGGCACCCAGTGACAATGATTGGGCTGCTGGTATCTTCAGGGTCA  550

seq1  TTTTAAAGGCCAGAAGTGCCAATCAGAGGGTGACCAACACAAGCAAGCTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGCCAGAAGTGCCAATCAGAGGGTGACCAACACAAGCAAGCTG  600

seq1  TAATGTAAGTGAATTC  615
      ||| ||||||||||||
seq2  TAAAGTAAGTGAATTC  616