BAC Information

Click to search

BAC

Clone NameB6Ng01-076I01
Chromosome12 (Build37)
Map Location 32,631,616 - 32,631,843
singlet/doubletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-076I01.bB6Ng01-076I01.g
ACCDH892752DH892753
length1,122895
definitionDH892752|Mus musculus domesticus DNA, BAC clone: B6Ng01-076I01, 5' end.DH892753|Mus musculus domesticus DNA, BAC clone: B6Ng01-076I01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccaaatggctgagaagcacctgaaaaaatg
ttcagcatccttaatcatcagggaaatgcaaatcaaaacaactctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
aaatgctggcgaggatatggagaaagagaaacacatatcatgtgagttct
tttgtgattgagttacctcactcaggatgatgctgtccaggtccatccat
ttgcctaggaatttcataaattcattctttttaatagctgagtagtactc
cattgtgtaaatgtaccacattttctgtatccattcctctgttgaggggc
atctgggttctttccagcttctggctagtataaataaggctgctatgaac
atagtggagcatgtgtccttcttaccagttgggtcatcttctggatatat
gcccaggagaggtattgctggatcctctggtagtactcactgatatgtac
tcactgataagtggatattagcccagatacttggaatacccaagatataa
gatacaatttgtgaaacacatgaaactcaagaagaacgaagaccaaagtg
tggacactttgccccttcttagaattgggaacaaaacacccatggaagga
gttacagagacaaagttttggagctgtggtgaaaggatggaccatctaga
gactgccgtatccggggatccatcccataatcagcctgcaaacactgaca
ccattgcatacactagcaaaattttgctgaaaagaaccctgatacagctg
tctcttgtgagactacgcccagggcctagcaaacacagaagtggatgctc
acagtcagctattggatgggatcacagagccccgatggcaggagctagag
aaagtaaccaagaagctgaaagggatctgcaaccctataagtggaacacc
atttgaactaaccagtaccccggagctctttgactctagctgcatatgta
tcaaaagaaggcctagacggccatgagtggaaagagaggcccattgtctt
gcaaactttttattgcttcattacaggagacgccagggccaataaagtgt
aagtgtgtgggtatggagatat
gaattctaaacccttgatcttggtcgaggatgcccttggactgttggaac
actggtggaaggctttagccatgtcagagcacttataggaaaatactgaa
agagagcacgtggatccatactctagactagcgtggtactggaactcggg
aatgaaaaattaatgtatgggtagagaacactagcctccaggaggagagc
ttccttgaaactcttttgcctcatgagtgacttttaagcctttcggcttg
tccagttgactcgaccagagagcgtagcatgcagagaagaataattttag
tatattgcctagagatcatttttgtgatatttttctgcagaatgtggctg
atttttccccttgtccgaagagcttgcccgaggcctatggacactttgcc
ccttcttagaattgggaacaaaacacccttggaaggagttacagagacaa
agtttggagcagtgatgaaaggatggaccatctagagactgccatatctg
gggatccatcccaaaatcagcttccaaacgctgacaccattgcatacact
atcaaaattttgctgaaaggacccagatatagctgtctcttgtgaggcta
tgccagtgcctggcaaacacagaagtggatgctcacagtcagatattgga
tggaacacagggcccccaatggaggagctagagaaagtacccaaggagct
aaagggatctgcaaccctatagtggaacaacatattaactatccagtacc
ccccccccccgcccccggaactcgtgtctctagctgcatatgaatcagaa
gatggcctaatcagctatcatggaaagagaggcccattggtcgtgcaaat
attatctgcctcagtacagggaatgccagggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-076I01.g_682_964 (reverse)

seq1  CTCCCACTTCTTGGCCCTG------------------------------G  20
      |||||||||||||||||||                              |
seq2  CTCCCACTTCTTGGCCCTGGCATTCCCTGTACTGAGGCAGATAATATTTG  50

seq1  CAAGACCCATGGGCCTCTCTTTCCA------CTGA---------CTTCTG  55
      || |||| |||||||||||||||||      ||||         ||||||
seq2  CACGACCAATGGGCCTCTCTTTCCATGATAGCTGATTAGGCCATCTTCTG  100

seq1  ATACATACGCAGCTAGAGACACGAGCTCC-------------GGGGGTAC  92
      || |||| ||||||||||||||||| |||             ||||||||
seq2  ATTCATATGCAGCTAGAGACACGAGTTCCGGGGGCGGGGGGGGGGGGTAC  150

seq1  TGGTCAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGC  142
      |||  |||| || ||||||||||| ||||||||||||||| |||||||||
seq2  TGGATAGTTAAT-ATGTTGTTCCA-CTATAGGGTTGCAGATCCCTTTAGC  198

seq1  TCCTTGGGTACTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATC  192
      ||||||||||||||||||| |||||||||||||| ||||||| ||| |||
seq2  TCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCC-ATC  247

seq1  CAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGC  228
      ||||| ||||||||||||||||||||||||||||||
seq2  CAATATCTGACTGTGAGCATCCACTTCTGTGTTTGC  283